RNA–Protein interactions for RNA: ENST00000541888.2

AC005840.3-201, humanhuman

TSL 5 BASIC

Gene AC005840.3, Length 1,803 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
AC005840.3-201ENST00000541888 PRR29P0C7W0 189 aa13.02□□□□□ -0.32
AC005840.3-201ENST00000541888 NESP48681 1621 aa13□□□□□ -0.33
AC005840.3-201ENST00000541888 TRIM41Q8WV44 630 aa12.98□□□□□ -0.33
AC005840.3-201ENST00000541888 PROM2Q8N271 834 aa12.97□□□□□ -0.33
AC005840.3-201ENST00000541888 PRKAR2AP13861 404 aaKnown RBP12.97□□□□□ -0.33
AC005840.3-201ENST00000541888 STAG3Q9UJ98 1225 aa12.96□□□□□ -0.33
AC005840.3-201ENST00000541888 FKBP8Q14318 412 aa12.95□□□□□ -0.34
AC005840.3-201ENST00000541888 CFTRP13569 1480 aa12.92□□□□□ -0.34
AC005840.3-201ENST00000541888 FAM9AQ8IZU1 332 aaPredicted RBP12.92□□□□□ -0.34
AC005840.3-201ENST00000541888 PRDM2Q13029 1718 aa12.9□□□□□ -0.34
AC005840.3-201ENST00000541888 CHADLQ6NUI6 762 aa12.9□□□□□ -0.34
AC005840.3-201ENST00000541888 CADPSQ9ULU8 1353 aa12.9□□□□□ -0.34
AC005840.3-201ENST00000541888 SYNJ1O43426 1573 aa12.89□□□□□ -0.35
AC005840.3-201ENST00000541888 WRNQ14191 1432 aaPredicted RBP eCLIP12.86□□□□□ -0.35
AC005840.3-201ENST00000541888 KIF21AQ7Z4S6 1674 aa12.83□□□□□ -0.36
AC005840.3-201ENST00000541888 FANCD2Q9BXW9 1451 aa12.81□□□□□ -0.36
AC005840.3-201ENST00000541888 HAX1O00165 279 aa12.81□□□□□ -0.36
AC005840.3-201ENST00000541888 CUX1P39880 1505 aa12.81□□□□□ -0.36
AC005840.3-201ENST00000541888 LOC105371045A0A1W2PR82 267 aa12.8□□□□□ -0.36
AC005840.3-201ENST00000541888 LAMC3Q9Y6N6 1575 aa12.8□□□□□ -0.36
AC005840.3-201ENST00000541888 CREBZFQ9NS37 354 aa12.79□□□□□ -0.36
AC005840.3-201ENST00000541888 RUSC2Q8N2Y8 1516 aa12.77□□□□□ -0.36
AC005840.3-201ENST00000541888 SOGA1O94964 1423 aa12.77□□□□□ -0.37
AC005840.3-201ENST00000541888 TOP2BQ02880 1626 aa12.76□□□□□ -0.37
AC005840.3-201ENST00000541888 FARP1Q9Y4F1 1045 aaPredicted RBP12.75□□□□□ -0.37
AC005840.3-201ENST00000541888 BIVM-ERCC5R4GMW8 1640 aa12.74□□□□□ -0.37
AC005840.3-201ENST00000541888 CEP164Q9UPV0 1460 aa12.72□□□□□ -0.37
AC005840.3-201ENST00000541888 EVX2Q03828 476 aa12.71□□□□□ -0.38
AC005840.3-201ENST00000541888 URB2Q14146 1524 aaKnown RBP12.69□□□□□ -0.38
AC005840.3-201ENST00000541888 PDS5BQ9NTI5 1447 aa12.69□□□□□ -0.38
AC005840.3-201ENST00000541888 C19orf67A6NJJ6 358 aa12.69□□□□□ -0.38
AC005840.3-201ENST00000541888 FGD5Q6ZNL6 1462 aa12.67□□□□□ -0.38
AC005840.3-201ENST00000541888 TOPBP1Q92547 1522 aa12.67□□□□□ -0.38
AC005840.3-201ENST00000541888 SP7Q8TDD2 431 aaPredicted RBP12.65□□□□□ -0.38
AC005840.3-201ENST00000541888 DNMBPQ6XZF7 1577 aa12.65□□□□□ -0.38
AC005840.3-201ENST00000541888 ERCC6Q03468 1493 aa12.65□□□□□ -0.39
AC005840.3-201ENST00000541888 RAD54L2Q9Y4B4 1467 aa12.64□□□□□ -0.39
AC005840.3-201ENST00000541888 MNX1P50219 401 aaPredicted RBP12.63□□□□□ -0.39
AC005840.3-201ENST00000541888 POLA1P09884 1462 aaPredicted RBP12.61□□□□□ -0.39
AC005840.3-201ENST00000541888 MIER1Q8N108 512 aa12.6□□□□□ -0.39
AC005840.3-201ENST00000541888 CUX2O14529 1486 aa12.57□□□□□ -0.4
AC005840.3-201ENST00000541888 MRC2Q9UBG0 1479 aa12.57□□□□□ -0.4
AC005840.3-201ENST00000541888 CD44P16070 742 aaKnown RBP12.56□□□□□ -0.4
AC005840.3-201ENST00000541888 FBXO3Q9UK99 471 aa12.56□□□□□ -0.4
AC005840.3-201ENST00000541888 THOC2Q8NI27 1593 aaKnown RBP12.56□□□□□ -0.4
AC005840.3-201ENST00000541888 NPM1P06748 294 aaKnown RBP eCLIP12.54□□□□□ -0.4
AC005840.3-201ENST00000541888 PLEKHG5O94827 1062 aa12.53□□□□□ -0.4
AC005840.3-201ENST00000541888 PLCD3Q8N3E9 789 aa12.53□□□□□ -0.4
AC005840.3-201ENST00000541888 TDRD9Q8NDG6 1382 aaKnown RBP12.52□□□□□ -0.41
AC005840.3-201ENST00000541888 WDR97A6NE52 1622 aa12.51□□□□□ -0.41
AC005840.3-201ENST00000541888 WDR62O43379 1518 aa12.51□□□□□ -0.41
AC005840.3-201ENST00000541888 RANGAP1P46060 587 aaPredicted RBP12.5□□□□□ -0.41
AC005840.3-201ENST00000541888 KIF27Q86VH2 1401 aa12.5□□□□□ -0.41
AC005840.3-201ENST00000541888 TARBP1Q13395 1621 aaKnown RBP12.49□□□□□ -0.41
AC005840.3-201ENST00000541888 RAPGEF2Q9Y4G8 1499 aa12.49□□□□□ -0.41
AC005840.3-201ENST00000541888 EEA1Q15075 1411 aa12.48□□□□□ -0.41
AC005840.3-201ENST00000541888 UBTFP17480 764 aaKnown RBP12.48□□□□□ -0.41
AC005840.3-201ENST00000541888 ABCA10Q8WWZ4 1543 aa12.47□□□□□ -0.41
AC005840.3-201ENST00000541888 ZNF608Q9ULD9 1512 aaPredicted RBP12.47□□□□□ -0.41
AC005840.3-201ENST00000541888 ZRANB1Q9UGI0 708 aa12.46□□□□□ -0.42
AC005840.3-201ENST00000541888 AQRO60306 1485 aaKnown RBP eCLIP12.45□□□□□ -0.42
AC005840.3-201ENST00000541888 KIF21BO75037 1637 aa12.44□□□□□ -0.42
AC005840.3-201ENST00000541888 ABCA5Q8WWZ7 1642 aa12.43□□□□□ -0.42
AC005840.3-201ENST00000541888 IGF1RP08069 1367 aa12.43□□□□□ -0.42
AC005840.3-201ENST00000541888 GOLGA3Q08378 1498 aa12.43□□□□□ -0.42
AC005840.3-201ENST00000541888 GABBR2O75899 941 aa12.42□□□□□ -0.42
AC005840.3-201ENST00000541888 PBRM1Q86U86 1689 aa12.41□□□□□ -0.42
AC005840.3-201ENST00000541888 GAPVD1Q14C86 1478 aa12.4□□□□□ -0.42
AC005840.3-201ENST00000541888 PAK3O75914 559 aaPredicted RBP12.4□□□□□ -0.42
AC005840.3-201ENST00000541888 VASPP50552 380 aaPredicted RBP12.4□□□□□ -0.42
AC005840.3-201ENST00000541888 PRXQ9BXM0 1461 aa12.4□□□□□ -0.42
AC005840.3-201ENST00000541888 ZBTB47Q9UFB7 747 aaPredicted RBP12.39□□□□□ -0.43
AC005840.3-201ENST00000541888 EIF4G3O43432 1585 aaKnown RBP12.39□□□□□ -0.43
AC005840.3-201ENST00000541888 ZNF579Q8NAF0 562 aaKnown RBP12.38□□□□□ -0.43
AC005840.3-201ENST00000541888 CARMIL1Q5VZK9 1371 aa12.37□□□□□ -0.43
AC005840.3-201ENST00000541888 CEP162Q5TB80 1403 aa12.36□□□□□ -0.43
AC005840.3-201ENST00000541888 IFT140Q96RY7 1462 aa12.36□□□□□ -0.43
AC005840.3-201ENST00000541888 TSPYL2Q9H2G4 693 aaPredicted RBP12.34□□□□□ -0.43
AC005840.3-201ENST00000541888 RASEFQ8IZ41 740 aa12.34□□□□□ -0.43
AC005840.3-201ENST00000541888 TNIKQ9UKE5 1360 aa12.33□□□□□ -0.43
AC005840.3-201ENST00000541888 PPARGC1BQ86YN6 1023 aaKnown RBP12.33□□□□□ -0.44
AC005840.3-201ENST00000541888 ERICH3Q5RHP9 1530 aa12.33□□□□□ -0.44
AC005840.3-201ENST00000541888 CLCN6P51797 869 aa12.32□□□□□ -0.44
AC005840.3-201ENST00000541888 CUL7Q14999 1698 aa12.32□□□□□ -0.44
AC005840.3-201ENST00000541888 NUBP1P53384 320 aa12.31□□□□□ -0.44
AC005840.3-201ENST00000541888 PHF12Q96QT6 1004 aa12.31□□□□□ -0.44
AC005840.3-201ENST00000541888 SNAPC4Q5SXM2 1469 aa12.3□□□□□ -0.44
AC005840.3-201ENST00000541888 ADAMTS12P58397 1594 aa12.28□□□□□ -0.44
AC005840.3-201ENST00000541888 GRIN2BQ13224 1484 aa12.28□□□□□ -0.44
AC005840.3-201ENST00000541888 TTBK1Q5TCY1 1321 aaPredicted RBP12.28□□□□□ -0.44
AC005840.3-201ENST00000541888 KLHL34Q8N239 644 aa12.27□□□□□ -0.44
AC005840.3-201ENST00000541888 CCDC61Q9Y6R9 512 aa12.27□□□□□ -0.44
AC005840.3-201ENST00000541888 CLIP1P30622 1438 aa12.26□□□□□ -0.45
AC005840.3-201ENST00000541888 CTTNBP2Q8WZ74 1663 aa12.26□□□□□ -0.45
AC005840.3-201ENST00000541888 P3H3Q8IVL6 736 aa12.25□□□□□ -0.45
AC005840.3-201ENST00000541888 IFNLR1Q8IU57 520 aaPredicted RBP12.24□□□□□ -0.45
AC005840.3-201ENST00000541888 GALR2O43603 387 aaPredicted RBP12.23□□□□□ -0.45
AC005840.3-201ENST00000541888 FHAD1B1AJZ9 1412 aa12.21□□□□□ -0.45
AC005840.3-201ENST00000541888 ARAP1Q96P48 1450 aa12.19□□□□□ -0.46
AC005840.3-201ENST00000541888 FAM212AQ96EL1 285 aa12.19□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms