RNA–Protein interactions for RNA: ENST00000541488.1

PRKDC-210, Transcript of protein kinase, DNA-activated, catalytic subunit, human

TSL 3

Gene PRKDC, Length 719 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PRKDC-210	ENST00000541488	MS4A3	Q96HJ5	214 aa		14.35	□□□□□ -0.11
PRKDC-210	ENST00000541488	ATMIN	O43313	823 aa	Predicted RBP	14.34	□□□□□ -0.11
PRKDC-210	ENST00000541488	SLC39A7	Q92504	469 aa		14.34	□□□□□ -0.11
PRKDC-210	ENST00000541488	C7	P10643	843 aa		14.33	□□□□□ -0.12
PRKDC-210	ENST00000541488	NPM1	P06748	294 aa	Known RBP eCLIP	14.32	□□□□□ -0.12
PRKDC-210	ENST00000541488	MNX1	P50219	401 aa	Predicted RBP	14.31	□□□□□ -0.12
PRKDC-210	ENST00000541488	MAMSTR	Q6ZN01	415 aa		14.31	□□□□□ -0.12
PRKDC-210	ENST00000541488	FAM163A	Q96GL9	167 aa	Predicted RBP	14.28	□□□□□ -0.12
PRKDC-210	ENST00000541488	SCUBE2	Q9NQ36	999 aa		14.21	□□□□□ -0.13
PRKDC-210	ENST00000541488	SPDYE4	A6NLX3	237 aa		14.19	□□□□□ -0.14
PRKDC-210	ENST00000541488	ATN1	P54259	1190 aa	Predicted RBP	14.17	□□□□□ -0.14
PRKDC-210	ENST00000541488	POTEF	A5A3E0	1075 aa		14.11	□□□□□ -0.15
PRKDC-210	ENST00000541488	TSPYL2	Q9H2G4	693 aa	Predicted RBP	14.09	□□□□□ -0.15
PRKDC-210	ENST00000541488	CCDC61	Q9Y6R9	512 aa		14.05	□□□□□ -0.16
PRKDC-210	ENST00000541488	BMP2K	Q9NSY1	1161 aa	Predicted RBP	14.04	□□□□□ -0.16
PRKDC-210	ENST00000541488	CDAN1	Q8IWY9	1227 aa		14.02	□□□□□ -0.17
PRKDC-210	ENST00000541488	TRPC6	Q9Y210	931 aa		14.02	□□□□□ -0.17
PRKDC-210	ENST00000541488	KIF12	Q96FN5	646 aa		14.01	□□□□□ -0.17
PRKDC-210	ENST00000541488	COLQ	Q9Y215	455 aa	Predicted RBP	13.94	□□□□□ -0.18
PRKDC-210	ENST00000541488	TIE1	P35590	1138 aa		13.92	□□□□□ -0.18
PRKDC-210	ENST00000541488	MAP3K13	O43283	966 aa		13.9	□□□□□ -0.18
PRKDC-210	ENST00000541488	SEC24B	O95487	1268 aa		13.88	□□□□□ -0.19
PRKDC-210	ENST00000541488	TTLL13P	A6NNM8	815 aa		13.85	□□□□□ -0.19
PRKDC-210	ENST00000541488	ST18	O60284	1047 aa		13.82	□□□□□ -0.2
PRKDC-210	ENST00000541488	SLAIN1	Q8ND83	568 aa		13.78	□□□□□ -0.2
PRKDC-210	ENST00000541488	RASEF	Q8IZ41	740 aa		13.77	□□□□□ -0.21
PRKDC-210	ENST00000541488	IER5L	Q5T953	404 aa		13.76	□□□□□ -0.21
PRKDC-210	ENST00000541488	TRIM35	Q9UPQ4	493 aa		13.76	□□□□□ -0.21
PRKDC-210	ENST00000541488	MMRN1	Q13201	1228 aa		13.74	□□□□□ -0.21
PRKDC-210	ENST00000541488	PROM2	Q8N271	834 aa		13.73	□□□□□ -0.21
PRKDC-210	ENST00000541488	SPNS2	Q8IVW8	549 aa		13.7	□□□□□ -0.22
PRKDC-210	ENST00000541488	PCDHB13	Q9Y5F0	798 aa		13.65	□□□□□ -0.22
PRKDC-210	ENST00000541488	PLEKHG5	O94827	1062 aa		13.62	□□□□□ -0.23
PRKDC-210	ENST00000541488	SGIP1	Q9BQI5	828 aa		13.62	□□□□□ -0.23
PRKDC-210	ENST00000541488	MIER1	Q8N108	512 aa		13.61	□□□□□ -0.23
PRKDC-210	ENST00000541488	PLCG2	P16885	1265 aa		13.59	□□□□□ -0.23
PRKDC-210	ENST00000541488	TMEM121B	Q9BXQ6	578 aa	Predicted RBP	13.58	□□□□□ -0.24
PRKDC-210	ENST00000541488	IFNL1	Q8IU54	200 aa		13.57	□□□□□ -0.24
PRKDC-210	ENST00000541488	TMEM106C	Q9BVX2	250 aa		13.56	□□□□□ -0.24
PRKDC-210	ENST00000541488	IRX5	P78411	483 aa	Predicted RBP	13.53	□□□□□ -0.24
PRKDC-210	ENST00000541488	MARVELD3	Q96A59	401 aa		13.53	□□□□□ -0.24
PRKDC-210	ENST00000541488	SNPH	O15079	494 aa		13.48	□□□□□ -0.25
PRKDC-210	ENST00000541488	NUBP1	P53384	320 aa		13.45	□□□□□ -0.26
PRKDC-210	ENST00000541488	PLCD3	Q8N3E9	789 aa		13.43	□□□□□ -0.26
PRKDC-210	ENST00000541488	OCEL1	Q9H607	264 aa		13.43	□□□□□ -0.26
PRKDC-210	ENST00000541488	EIF2AK3	Q9NZJ5	1116 aa	Known RBP	13.43	□□□□□ -0.26
PRKDC-210	ENST00000541488	EMP3	P54852	163 aa		13.36	□□□□□ -0.27
PRKDC-210	ENST00000541488	FAM212A	Q96EL1	285 aa		13.35	□□□□□ -0.27
PRKDC-210	ENST00000541488	FKBP8	Q14318	412 aa		13.34	□□□□□ -0.27
PRKDC-210	ENST00000541488	KRTAP3-3	Q9BYR6	98 aa		13.34	□□□□□ -0.27
PRKDC-210	ENST00000541488	KRTAP3-2	Q9BYR7	98 aa		13.34	□□□□□ -0.27
PRKDC-210	ENST00000541488	ZBTB47	Q9UFB7	747 aa	Predicted RBP	13.33	□□□□□ -0.28
PRKDC-210	ENST00000541488	POTEB3	A0JP26	581 aa		13.31	□□□□□ -0.28
PRKDC-210	ENST00000541488	POTEB	Q6S5H4	581 aa		13.31	□□□□□ -0.28
PRKDC-210	ENST00000541488	HS3ST6	Q96QI5	342 aa		13.28	□□□□□ -0.28
PRKDC-210	ENST00000541488	FAM205C	A6NFA0	338 aa		13.25	□□□□□ -0.29
PRKDC-210	ENST00000541488	C3orf67	Q6ZVT6	689 aa		13.24	□□□□□ -0.29
PRKDC-210	ENST00000541488	PDCD7	Q8N8D1	485 aa	Known RBP	13.23	□□□□□ -0.29
PRKDC-210	ENST00000541488	PYGB	P11216	843 aa		13.22	□□□□□ -0.29
PRKDC-210	ENST00000541488	PCDHB8	Q9UN66	801 aa		13.22	□□□□□ -0.29
PRKDC-210	ENST00000541488	DCAF8	Q5TAQ9	597 aa		13.14	□□□□□ -0.31
PRKDC-210	ENST00000541488	L3MBTL3	Q96JM7	780 aa	Predicted RBP	13.14	□□□□□ -0.31
PRKDC-210	ENST00000541488	MKRN3	Q13064	507 aa	Known RBP	13.08	□□□□□ -0.32
PRKDC-210	ENST00000541488	GOLGA2	Q08379	1002 aa		13.06	□□□□□ -0.32
PRKDC-210	ENST00000541488	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	13.04	□□□□□ -0.32	4e-7	■■□□□ 13.4
PRKDC-210	ENST00000541488	RNF166	Q96A37	237 aa	Predicted RBP	13.02	□□□□□ -0.33
PRKDC-210	ENST00000541488	HOXB3	P14651	431 aa	Predicted RBP	13	□□□□□ -0.33
PRKDC-210	ENST00000541488	ZNF467	Q7Z7K2	595 aa	Predicted RBP	12.98	□□□□□ -0.33
PRKDC-210	ENST00000541488	DPY19L2	Q6NUT2	758 aa		12.95	□□□□□ -0.34
PRKDC-210	ENST00000541488	HOXB1	P14653	301 aa	Predicted RBP	12.94	□□□□□ -0.34
PRKDC-210	ENST00000541488	ERBB3	P21860	1342 aa		12.93	□□□□□ -0.34
PRKDC-210	ENST00000541488	ILDR1	Q86SU0	546 aa	Predicted RBP	12.93	□□□□□ -0.34
PRKDC-210	ENST00000541488	PSEN1	P49768	467 aa		12.91	□□□□□ -0.34
PRKDC-210	ENST00000541488	ZNF710	Q8N1W2	664 aa		12.91	□□□□□ -0.34
PRKDC-210	ENST00000541488	MYT1L	Q9UL68	1186 aa		12.9	□□□□□ -0.34
PRKDC-210	ENST00000541488	BOLA1	Q9Y3E2	137 aa		12.87	□□□□□ -0.35
PRKDC-210	ENST00000541488	DOK7	Q18PE1	504 aa		12.85	□□□□□ -0.35
PRKDC-210	ENST00000541488		G3V3G9	751 aa		12.84	□□□□□ -0.35
PRKDC-210	ENST00000541488	GSE1	Q14687	1217 aa		12.84	□□□□□ -0.35
PRKDC-210	ENST00000541488	VARS2	Q5ST30	1063 aa	Known RBP	12.84	□□□□□ -0.35
PRKDC-210	ENST00000541488	CHRM1	P11229	460 aa	Predicted RBP	12.81	□□□□□ -0.36
PRKDC-210	ENST00000541488	FBXO3	Q9UK99	471 aa		12.81	□□□□□ -0.36
PRKDC-210	ENST00000541488	PDAP1	Q13442	181 aa	Known RBP	12.77	□□□□□ -0.37
PRKDC-210	ENST00000541488	CABP2	Q9NPB3	220 aa		12.77	□□□□□ -0.37
PRKDC-210	ENST00000541488	RIMBP2	O15034	1052 aa		12.75	□□□□□ -0.37
PRKDC-210	ENST00000541488	ZNF687	Q8N1G0	1237 aa		12.74	□□□□□ -0.37
PRKDC-210	ENST00000541488	VASP	P50552	380 aa	Predicted RBP	12.71	□□□□□ -0.37
PRKDC-210	ENST00000541488	KLHL34	Q8N239	644 aa		12.71	□□□□□ -0.37
PRKDC-210	ENST00000541488	PTGER2	P43116	358 aa		12.7	□□□□□ -0.38
PRKDC-210	ENST00000541488	ZSWIM6	Q9HCJ5	1215 aa		12.65	□□□□□ -0.38
PRKDC-210	ENST00000541488	GPR153	Q6NV75	609 aa		12.63	□□□□□ -0.39
PRKDC-210	ENST00000541488	TMEM92	Q6UXU6	159 aa		12.63	□□□□□ -0.39
PRKDC-210	ENST00000541488	ANKRD13D	Q6ZTN6	518 aa		12.62	□□□□□ -0.39
PRKDC-210	ENST00000541488	MICALL2	Q8IY33	904 aa		12.55	□□□□□ -0.4
PRKDC-210	ENST00000541488	IFNLR1	Q8IU57	520 aa	Predicted RBP	12.54	□□□□□ -0.4
PRKDC-210	ENST00000541488	LSM11	P83369	360 aa	Known RBP eCLIP	12.53	□□□□□ -0.4
PRKDC-210	ENST00000541488	EFCAB3	Q8N7B9	438 aa		12.53	□□□□□ -0.4
PRKDC-210	ENST00000541488	ARSI	Q5FYB1	569 aa		12.52	□□□□□ -0.41
PRKDC-210	ENST00000541488	PLA2G2E	Q9NZK7	142 aa		12.51	□□□□□ -0.41
PRKDC-210	ENST00000541488	ZNF316	A6NFI3	1004 aa	Predicted RBP	12.48	□□□□□ -0.41

Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms