RNA–Protein interactions for RNA: ENST00000540975.5

YBX3-210, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 677 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-210ENST00000540975 CIZ1Q9ULV3 898 aaPredicted RBP17.64■□□□□ 0.41
YBX3-210ENST00000540975 CCDC61Q9Y6R9 512 aa17.61■□□□□ 0.41
YBX3-210ENST00000540975 ZNF579Q8NAF0 562 aaKnown RBP17.54■□□□□ 0.4
YBX3-210ENST00000540975 PKD2Q13563 968 aa17.5■□□□□ 0.39
YBX3-210ENST00000540975 PHF12Q96QT6 1004 aa17.5■□□□□ 0.39
YBX3-210ENST00000540975 PYGBP11216 843 aa17.47■□□□□ 0.39
YBX3-210ENST00000540975 CHRM1P11229 460 aaPredicted RBP17.45■□□□□ 0.38
YBX3-210ENST00000540975 KIF12Q96FN5 646 aa17.45■□□□□ 0.38
YBX3-210ENST00000540975 SP7Q8TDD2 431 aaPredicted RBP17.44■□□□□ 0.38
YBX3-210ENST00000540975 TRIM41Q8WV44 630 aa17.43■□□□□ 0.38
YBX3-210ENST00000540975 AMER1Q5JTC6 1135 aaPredicted RBP17.42■□□□□ 0.38
YBX3-210ENST00000540975 RTN4Q9NQC3 1192 aaKnown RBP17.4■□□□□ 0.38
YBX3-210ENST00000540975 MAP3K13O43283 966 aa17.39■□□□□ 0.37
YBX3-210ENST00000540975 CLCN6P51797 869 aa17.39■□□□□ 0.37
YBX3-210ENST00000540975 GABBR2O75899 941 aa17.37■□□□□ 0.37
YBX3-210ENST00000540975 ECM2O94769 699 aaPredicted RBP17.37■□□□□ 0.37
YBX3-210ENST00000540975 SGIP1Q9BQI5 828 aa17.34■□□□□ 0.37
YBX3-210ENST00000540975 PCDHB13Q9Y5F0 798 aa17.33■□□□□ 0.36
YBX3-210ENST00000540975 GALR2O43603 387 aaPredicted RBP17.29■□□□□ 0.36
YBX3-210ENST00000540975 MS4A3Q96HJ5 214 aa17.29■□□□□ 0.36
YBX3-210ENST00000540975 IFNL1Q8IU54 200 aa17.27■□□□□ 0.36
YBX3-210ENST00000540975 PCDHB8Q9UN66 801 aa17.25■□□□□ 0.35
YBX3-210ENST00000540975 ZNF467Q7Z7K2 595 aaPredicted RBP17.22■□□□□ 0.35
YBX3-210ENST00000540975 RNF25Q96BH1 459 aaPredicted RBP17.22■□□□□ 0.35
YBX3-210ENST00000540975 RGL2O15211 777 aa17.21■□□□□ 0.35
YBX3-210ENST00000540975 RIOK3O14730 519 aaKnown RBP17.16■□□□□ 0.34
YBX3-210ENST00000540975 TRPC6Q9Y210 931 aa17.15■□□□□ 0.34
YBX3-210ENST00000540975 VGFO15240 615 aaPredicted RBP17.07■□□□□ 0.32
YBX3-210ENST00000540975 DCBLD2Q96PD2 775 aa17.07■□□□□ 0.32
YBX3-210ENST00000540975 TIE1P35590 1138 aa17.06■□□□□ 0.32
YBX3-210ENST00000540975 PSEN1P49768 467 aa17.06■□□□□ 0.32
YBX3-210ENST00000540975 PDAP1Q13442 181 aaKnown RBP17.06■□□□□ 0.32
YBX3-210ENST00000540975 TAOK2Q9UL54 1235 aa17.05■□□□□ 0.32
YBX3-210ENST00000540975 BMP2KQ9NSY1 1161 aaPredicted RBP17.04■□□□□ 0.32
YBX3-210ENST00000540975 POTEIP0CG38 1075 aa17.01■□□□□ 0.31
YBX3-210ENST00000540975 TMEM106CQ9BVX2 250 aa17.01■□□□□ 0.31
YBX3-210ENST00000540975 TTLL13PA6NNM8 815 aa17■□□□□ 0.31
YBX3-210ENST00000540975 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP16.99■□□□□ 0.31
YBX3-210ENST00000540975 ATMINO43313 823 aaPredicted RBP16.99■□□□□ 0.31
YBX3-210ENST00000540975 ASTLQ6HA08 431 aaPredicted RBP16.99■□□□□ 0.31
YBX3-210ENST00000540975 ZFP91Q96JP5 570 aaPredicted RBP16.99■□□□□ 0.31
YBX3-210ENST00000540975 DCAF8L2P0C7V8 631 aa16.95■□□□□ 0.3
YBX3-210ENST00000540975 ATN1P54259 1190 aaPredicted RBP16.95■□□□□ 0.3
YBX3-210ENST00000540975 PELP1Q8IZL8 1130 aaKnown RBP16.9■□□□□ 0.3
YBX3-210ENST00000540975 STK25O00506 426 aa16.89■□□□□ 0.29
YBX3-210ENST00000540975 BCL11BQ9C0K0 894 aaPredicted RBP16.88■□□□□ 0.29
YBX3-210ENST00000540975 TRIM35Q9UPQ4 493 aa16.88■□□□□ 0.29
YBX3-210ENST00000540975 CHGAP10645 457 aaKnown RBP16.87■□□□□ 0.29
YBX3-210ENST00000540975 STK24Q9Y6E0 443 aa16.86■□□□□ 0.29
YBX3-210ENST00000540975 CABP2Q9NPB3 220 aa16.84■□□□□ 0.29
YBX3-210ENST00000540975 HS6ST3Q8IZP7 471 aa16.83■□□□□ 0.28
YBX3-210ENST00000540975 GOLGA2Q08379 1002 aa16.8■□□□□ 0.28
YBX3-210ENST00000540975 EFCAB3Q8N7B9 438 aa16.77■□□□□ 0.28
YBX3-210ENST00000540975 SLC39A7Q92504 469 aa16.76■□□□□ 0.27
YBX3-210ENST00000540975 C7P10643 843 aa16.75■□□□□ 0.27
YBX3-210ENST00000540975 MKRN3Q13064 507 aaKnown RBP16.75■□□□□ 0.27
YBX3-210ENST00000540975 IER5LQ5T953 404 aa16.74■□□□□ 0.27
YBX3-210ENST00000540975 DNAJC5Q9H3Z4 198 aa16.7■□□□□ 0.26
YBX3-210ENST00000540975 SOX12O15370 315 aa16.68■□□□□ 0.26
YBX3-210ENST00000540975 METRNQ9UJH8 293 aa16.68■□□□□ 0.26
YBX3-210ENST00000540975 IRX5P78411 483 aaPredicted RBP16.66■□□□□ 0.26
YBX3-210ENST00000540975 POTEFA5A3E0 1075 aa16.63■□□□□ 0.25
YBX3-210ENST00000540975 SEC24BO95487 1268 aa16.63■□□□□ 0.25
YBX3-210ENST00000540975 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.63■□□□□ 0.258e-7■□□□□ 11
YBX3-210ENST00000540975 COLQQ9Y215 455 aaPredicted RBP16.63■□□□□ 0.25
YBX3-210ENST00000540975 NKX1-1Q15270 411 aaPredicted RBP16.62■□□□□ 0.25
YBX3-210ENST00000540975 ILDR1Q86SU0 546 aaPredicted RBP16.62■□□□□ 0.25
YBX3-210ENST00000540975 BBXQ8WY36 941 aaPredicted RBP16.62■□□□□ 0.25
YBX3-210ENST00000540975 OCEL1Q9H607 264 aa16.62■□□□□ 0.25
YBX3-210ENST00000540975 MFRPQ9BY79 579 aa16.59■□□□□ 0.25
YBX3-210ENST00000540975 PHF8Q9UPP1 1060 aa16.59■□□□□ 0.25
YBX3-210ENST00000540975 PLCG2P16885 1265 aa16.58■□□□□ 0.24
YBX3-210ENST00000540975 NLRP6P59044 892 aa16.56■□□□□ 0.24
YBX3-210ENST00000540975 PDCD7Q8N8D1 485 aaKnown RBP16.55■□□□□ 0.24
YBX3-210ENST00000540975 FBXO22Q8NEZ5 403 aa16.54■□□□□ 0.24
YBX3-210ENST00000540975 MS4A4AQ96JQ5 239 aa16.52■□□□□ 0.24
YBX3-210ENST00000540975 DPY19L2Q6NUT2 758 aa16.51■□□□□ 0.23
YBX3-210ENST00000540975 POTEB2H3BUK9 544 aa16.48■□□□□ 0.23
YBX3-210ENST00000540975 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.48■□□□□ 0.23
YBX3-210ENST00000540975 GTPBP6O43824 516 aaPredicted RBP16.47■□□□□ 0.23
YBX3-210ENST00000540975 RYDENQ9NUL5 291 aaKnown RBP16.44■□□□□ 0.22
YBX3-210ENST00000540975 POTEJP0CG39 1038 aa16.4■□□□□ 0.22
YBX3-210ENST00000540975 L3MBTL3Q96JM7 780 aaPredicted RBP16.4■□□□□ 0.22
YBX3-210ENST00000540975 PPP1R37O75864 691 aa16.39■□□□□ 0.21
YBX3-210ENST00000540975 LHX8Q68G74 356 aa16.39■□□□□ 0.21
YBX3-210ENST00000540975 SPRYD3Q8NCJ5 442 aa16.39■□□□□ 0.21
YBX3-210ENST00000540975 PAXIP1Q6ZW49 1069 aaPredicted RBP16.36■□□□□ 0.21
YBX3-210ENST00000540975 BOLA1Q9Y3E2 137 aa16.35■□□□□ 0.21
YBX3-210ENST00000540975 CFAP44Q96MT7 982 aa16.34■□□□□ 0.21
YBX3-210ENST00000540975 TMEM121BQ9BXQ6 578 aaPredicted RBP16.31■□□□□ 0.2
YBX3-210ENST00000540975 G3V3G9 751 aa16.29■□□□□ 0.2
YBX3-210ENST00000540975 MICALL2Q8IY33 904 aa16.28■□□□□ 0.2
YBX3-210ENST00000540975 MAMSTRQ6ZN01 415 aa16.26■□□□□ 0.19
YBX3-210ENST00000540975 PLCB2Q00722 1185 aa16.21■□□□□ 0.19
YBX3-210ENST00000540975 OTUD5Q96G74 571 aa16.21■□□□□ 0.19
YBX3-210ENST00000540975 SCUBE2Q9NQ36 999 aa16.21■□□□□ 0.19
YBX3-210ENST00000540975 C3orf67Q6ZVT6 689 aa16.19■□□□□ 0.18
YBX3-210ENST00000540975 EIF2AK3Q9NZJ5 1116 aaKnown RBP16.18■□□□□ 0.18
YBX3-210ENST00000540975 TMEM92Q6UXU6 159 aa16.09■□□□□ 0.17
YBX3-210ENST00000540975 SLAIN1Q8ND83 568 aa16.09■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 60.8 ms