RNA–Protein interactions for RNA: ENST00000535607.5

USP28-202, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 683 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-202ENST00000535607 FARP1Q9Y4F1 1045 aaPredicted RBP12.23□□□□□ -0.45
USP28-202ENST00000535607 PAK3O75914 559 aaPredicted RBP12.21□□□□□ -0.45
USP28-202ENST00000535607 PLCB2Q00722 1185 aa12.21□□□□□ -0.45
USP28-202ENST00000535607 RASEFQ8IZ41 740 aa12.21□□□□□ -0.45
USP28-202ENST00000535607 CHGAP10645 457 aaKnown RBP12.19□□□□□ -0.46
USP28-202ENST00000535607 BBXQ8WY36 941 aaPredicted RBP12.19□□□□□ -0.46
USP28-202ENST00000535607 FXR2P51116 673 aaKnown RBP eCLIP12.18□□□□□ -0.46
USP28-202ENST00000535607 TSPYL2Q9H2G4 693 aaPredicted RBP12.17□□□□□ -0.46
USP28-202ENST00000535607 RIOK3O14730 519 aaKnown RBP12.16□□□□□ -0.46
USP28-202ENST00000535607 HAP1P54257 671 aaPredicted RBP12.14□□□□□ -0.47
USP28-202ENST00000535607 PYGBP11216 843 aa12.13□□□□□ -0.47
USP28-202ENST00000535607 CHRM1P11229 460 aaPredicted RBP12.12□□□□□ -0.47
USP28-202ENST00000535607 PIP4P2Q8N4L2 257 aa12.11□□□□□ -0.47
USP28-202ENST00000535607 CCDC180Q9P1Z9 1646 aa12.11□□□□□ -0.47
USP28-202ENST00000535607 VGFO15240 615 aaPredicted RBP12.09□□□□□ -0.47
USP28-202ENST00000535607 PAXIP1Q6ZW49 1069 aaPredicted RBP12.09□□□□□ -0.47
USP28-202ENST00000535607 CFAP44Q96MT7 982 aa12.09□□□□□ -0.47
USP28-202ENST00000535607 HS6ST3Q8IZP7 471 aa12.06□□□□□ -0.48
USP28-202ENST00000535607 STK25O00506 426 aa12.05□□□□□ -0.48
USP28-202ENST00000535607 ZNF467Q7Z7K2 595 aaPredicted RBP12.05□□□□□ -0.48
USP28-202ENST00000535607 SPRYD3Q8NCJ5 442 aa12.05□□□□□ -0.48
USP28-202ENST00000535607 RNF25Q96BH1 459 aaPredicted RBP12.05□□□□□ -0.48
USP28-202ENST00000535607 STK24Q9Y6E0 443 aa11.98□□□□□ -0.49
USP28-202ENST00000535607 CD44P16070 742 aaKnown RBP11.95□□□□□ -0.5
USP28-202ENST00000535607 BCL11BQ9C0K0 894 aaPredicted RBP11.95□□□□□ -0.5
USP28-202ENST00000535607 ZRANB1Q9UGI0 708 aa11.95□□□□□ -0.5
USP28-202ENST00000535607 CCDC61Q9Y6R9 512 aa11.95□□□□□ -0.5
USP28-202ENST00000535607 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.94□□□□□ -0.5
USP28-202ENST00000535607 ZFP91Q96JP5 570 aaPredicted RBP11.94□□□□□ -0.5
USP28-202ENST00000535607 SGIP1Q9BQI5 828 aa11.94□□□□□ -0.5
USP28-202ENST00000535607 RYDENQ9NUL5 291 aaKnown RBP11.94□□□□□ -0.5
USP28-202ENST00000535607 PDAP1Q13442 181 aaKnown RBP11.93□□□□□ -0.5
USP28-202ENST00000535607 PCDHB13Q9Y5F0 798 aa11.92□□□□□ -0.5
USP28-202ENST00000535607 ZNF579Q8NAF0 562 aaKnown RBP11.91□□□□□ -0.5
USP28-202ENST00000535607 VSIG10Q8N0Z9 540 aa11.89□□□□□ -0.51
USP28-202ENST00000535607 DNAJC5Q9H3Z4 198 aa11.88□□□□□ -0.51
USP28-202ENST00000535607 PCDHB8Q9UN66 801 aa11.88□□□□□ -0.51
USP28-202ENST00000535607 PSEN1P49768 467 aa11.85□□□□□ -0.51
USP28-202ENST00000535607 MAP3K13O43283 966 aa11.83□□□□□ -0.52
USP28-202ENST00000535607 KIF12Q96FN5 646 aa11.82□□□□□ -0.52
USP28-202ENST00000535607 IFNL1Q8IU54 200 aa11.8□□□□□ -0.52
USP28-202ENST00000535607 PHF12Q96QT6 1004 aa11.78□□□□□ -0.52
USP28-202ENST00000535607 GOLGA2Q08379 1002 aa11.77□□□□□ -0.53
USP28-202ENST00000535607 NKX1-1Q15270 411 aaPredicted RBP11.77□□□□□ -0.53
USP28-202ENST00000535607 TSHZ2Q9NRE2 1034 aa11.76□□□□□ -0.53
USP28-202ENST00000535607 C19orf67A6NJJ6 358 aa11.75□□□□□ -0.53
USP28-202ENST00000535607 HAX1O00165 279 aa11.75□□□□□ -0.53
USP28-202ENST00000535607 GTPBP6O43824 516 aaPredicted RBP11.74□□□□□ -0.53
USP28-202ENST00000535607 CABP2Q9NPB3 220 aa11.71□□□□□ -0.53
USP28-202ENST00000535607 BCANQ96GW7 911 aa11.67□□□□□ -0.54
USP28-202ENST00000535607 CLCN6P51797 869 aa11.66□□□□□ -0.54
USP28-202ENST00000535607 NLRP6P59044 892 aa11.66□□□□□ -0.54
USP28-202ENST00000535607 MS4A3Q96HJ5 214 aa11.66□□□□□ -0.54
USP28-202ENST00000535607 TMEM106CQ9BVX2 250 aa11.66□□□□□ -0.54
USP28-202ENST00000535607 SOX12O15370 315 aa11.65□□□□□ -0.54
USP28-202ENST00000535607 MKRN3Q13064 507 aaKnown RBP11.64□□□□□ -0.55
USP28-202ENST00000535607 EFCAB3Q8N7B9 438 aa11.64□□□□□ -0.55
USP28-202ENST00000535607 KDM2AQ9Y2K7 1162 aa11.63□□□□□ -0.55
USP28-202ENST00000535607 TIE1P35590 1138 aa11.59□□□□□ -0.55
USP28-202ENST00000535607 MFRPQ9BY79 579 aa11.59□□□□□ -0.55
USP28-202ENST00000535607 WDR70Q9NW82 654 aa11.57□□□□□ -0.56
USP28-202ENST00000535607 PHF8Q9UPP1 1060 aa11.56□□□□□ -0.56
USP28-202ENST00000535607 NBR1Q14596 966 aa11.53□□□□□ -0.56
USP28-202ENST00000535607 TTLL13PA6NNM8 815 aa11.51□□□□□ -0.57
USP28-202ENST00000535607 GALR2O43603 387 aaPredicted RBP11.51□□□□□ -0.57
USP28-202ENST00000535607 TRPC6Q9Y210 931 aa11.51□□□□□ -0.57
USP28-202ENST00000535607 FBXO22Q8NEZ5 403 aa11.49□□□□□ -0.57
USP28-202ENST00000535607 BMP2KQ9NSY1 1161 aaPredicted RBP11.48□□□□□ -0.57
USP28-202ENST00000535607 TRIM35Q9UPQ4 493 aa11.48□□□□□ -0.57
USP28-202ENST00000535607 P3H3Q8IVL6 736 aa11.47□□□□□ -0.57
USP28-202ENST00000535607 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.47□□□□□ -0.573e-6■□□□□ 9.2
USP28-202ENST00000535607 ZCCHC6Q5VYS8 1495 aaKnown RBP11.46□□□□□ -0.57
USP28-202ENST00000535607 POTEHQ6S545 545 aa11.45□□□□□ -0.58
USP28-202ENST00000535607 EVX2Q03828 476 aa11.44□□□□□ -0.58
USP28-202ENST00000535607 G3V3G9 751 aa11.43□□□□□ -0.58
USP28-202ENST00000535607 PPP1R37O75864 691 aa11.42□□□□□ -0.58
USP28-202ENST00000535607 DCBLD2Q96PD2 775 aa11.42□□□□□ -0.58
USP28-202ENST00000535607 DCAF1Q9Y4B6 1507 aa11.4□□□□□ -0.59
USP28-202ENST00000535607 ABCC9O60706 1549 aa11.38□□□□□ -0.59
USP28-202ENST00000535607 PDE4AP27815 886 aa11.37□□□□□ -0.59
USP28-202ENST00000535607 CADPS2Q86UW7 1296 aa11.37□□□□□ -0.59
USP28-202ENST00000535607 MS4A4AQ96JQ5 239 aa11.37□□□□□ -0.59
USP28-202ENST00000535607 GABBR2O75899 941 aa11.36□□□□□ -0.59
USP28-202ENST00000535607 ATN1P54259 1190 aaPredicted RBP11.36□□□□□ -0.59
USP28-202ENST00000535607 IER5LQ5T953 404 aa11.36□□□□□ -0.59
USP28-202ENST00000535607 MYO15BQ96JP2 1530 aa11.35□□□□□ -0.59
USP28-202ENST00000535607 ATMINO43313 823 aaPredicted RBP11.35□□□□□ -0.59
USP28-202ENST00000535607 PLCG2P16885 1265 aa11.35□□□□□ -0.59
USP28-202ENST00000535607 ASTLQ6HA08 431 aaPredicted RBP11.34□□□□□ -0.59
USP28-202ENST00000535607 SEC24BO95487 1268 aa11.33□□□□□ -0.6
USP28-202ENST00000535607 OCEL1Q9H607 264 aa11.32□□□□□ -0.6
USP28-202ENST00000535607 LARP6Q9BRS8 491 aaKnown RBP11.31□□□□□ -0.6
USP28-202ENST00000535607 TULP1O00294 542 aaPredicted RBP11.28□□□□□ -0.6
USP28-202ENST00000535607 E2F4Q16254 413 aa11.28□□□□□ -0.6
USP28-202ENST00000535607 DDX27Q96GQ7 796 aaKnown RBP11.28□□□□□ -0.6
USP28-202ENST00000535607 L3MBTL3Q96JM7 780 aaPredicted RBP11.27□□□□□ -0.61
USP28-202ENST00000535607 NACADO15069 1562 aa11.27□□□□□ -0.61
USP28-202ENST00000535607 ILDR1Q86SU0 546 aaPredicted RBP11.26□□□□□ -0.61
USP28-202ENST00000535607 TMC2Q8TDI7 906 aa11.26□□□□□ -0.61
USP28-202ENST00000535607 SLC39A7Q92504 469 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 77.3 ms