RNA–Protein interactions for RNA: ENST00000533222.5

CD44-236, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-236ENST00000533222 RNF25Q96BH1 459 aaPredicted RBP10.85□□□□□ -0.67
CD44-236ENST00000533222 PYGBP11216 843 aa10.82□□□□□ -0.68
CD44-236ENST00000533222 TRIM41Q8WV44 630 aa10.79□□□□□ -0.68
CD44-236ENST00000533222 CCDC61Q9Y6R9 512 aa10.78□□□□□ -0.68
CD44-236ENST00000533222 CD44P16070 742 aaKnown RBP10.76□□□□□ -0.69
CD44-236ENST00000533222 ZRANB1Q9UGI0 708 aa10.73□□□□□ -0.69
CD44-236ENST00000533222 C19orf67A6NJJ6 358 aa10.72□□□□□ -0.69
CD44-236ENST00000533222 CHRM1P11229 460 aaPredicted RBP10.72□□□□□ -0.69
CD44-236ENST00000533222 PAK3O75914 559 aaPredicted RBP10.71□□□□□ -0.69
CD44-236ENST00000533222 PHF12Q96QT6 1004 aa10.71□□□□□ -0.69
CD44-236ENST00000533222 RIOK3O14730 519 aaKnown RBP10.7□□□□□ -0.7
CD44-236ENST00000533222 EVX2Q03828 476 aa10.67□□□□□ -0.7
CD44-236ENST00000533222 PCDHB8Q9UN66 801 aa10.67□□□□□ -0.7
CD44-236ENST00000533222 PCDHB13Q9Y5F0 798 aa10.67□□□□□ -0.7
CD44-236ENST00000533222 CHGAP10645 457 aaKnown RBP10.66□□□□□ -0.7
CD44-236ENST00000533222 KIF12Q96FN5 646 aa10.66□□□□□ -0.7
CD44-236ENST00000533222 MAP3K13O43283 966 aa10.65□□□□□ -0.7
CD44-236ENST00000533222 HAX1O00165 279 aa10.64□□□□□ -0.71
CD44-236ENST00000533222 POTEHQ6S545 545 aa10.63□□□□□ -0.71
CD44-236ENST00000533222 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.62□□□□□ -0.71
CD44-236ENST00000533222 IFNL1Q8IU54 200 aa10.62□□□□□ -0.71
CD44-236ENST00000533222 ZNF579Q8NAF0 562 aaKnown RBP10.62□□□□□ -0.71
CD44-236ENST00000533222 ZFP91Q96JP5 570 aaPredicted RBP10.62□□□□□ -0.71
CD44-236ENST00000533222 VGFO15240 615 aaPredicted RBP10.61□□□□□ -0.71
CD44-236ENST00000533222 HS6ST3Q8IZP7 471 aa10.6□□□□□ -0.71
CD44-236ENST00000533222 ZNF467Q7Z7K2 595 aaPredicted RBP10.59□□□□□ -0.71
CD44-236ENST00000533222 STK25O00506 426 aa10.58□□□□□ -0.72
CD44-236ENST00000533222 MS4A3Q96HJ5 214 aa10.57□□□□□ -0.72
CD44-236ENST00000533222 BCL11BQ9C0K0 894 aaPredicted RBP10.56□□□□□ -0.72
CD44-236ENST00000533222 TRPC6Q9Y210 931 aa10.56□□□□□ -0.72
CD44-236ENST00000533222 BBXQ8WY36 941 aaPredicted RBP10.55□□□□□ -0.72
CD44-236ENST00000533222 SGIP1Q9BQI5 828 aa10.54□□□□□ -0.72
CD44-236ENST00000533222 STK24Q9Y6E0 443 aa10.54□□□□□ -0.72
CD44-236ENST00000533222 PSEN1P49768 467 aa10.53□□□□□ -0.72
CD44-236ENST00000533222 PDAP1Q13442 181 aaKnown RBP10.53□□□□□ -0.72
CD44-236ENST00000533222 NKX1-1Q15270 411 aaPredicted RBP10.53□□□□□ -0.72
CD44-236ENST00000533222 PLCB2Q00722 1185 aa10.52□□□□□ -0.73
CD44-236ENST00000533222 TAOK2Q9UL54 1235 aa10.52□□□□□ -0.73
CD44-236ENST00000533222 GALR2O43603 387 aaPredicted RBP10.5□□□□□ -0.73
CD44-236ENST00000533222 SLC24A1O60721 1099 aa10.49□□□□□ -0.73
CD44-236ENST00000533222 PAXIP1Q6ZW49 1069 aaPredicted RBP10.48□□□□□ -0.73
CD44-236ENST00000533222 CFAP44Q96MT7 982 aa10.47□□□□□ -0.73
CD44-236ENST00000533222 DNAJC5Q9H3Z4 198 aa10.47□□□□□ -0.73
CD44-236ENST00000533222 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.46□□□□□ -0.73
CD44-236ENST00000533222 TMEM106CQ9BVX2 250 aa10.42□□□□□ -0.74
CD44-236ENST00000533222 CABP2Q9NPB3 220 aa10.42□□□□□ -0.74
CD44-236ENST00000533222 SPRYD3Q8NCJ5 442 aa10.4□□□□□ -0.74
CD44-236ENST00000533222 BMP2KQ9NSY1 1161 aaPredicted RBP10.4□□□□□ -0.74
CD44-236ENST00000533222 GTPBP6O43824 516 aaPredicted RBP10.39□□□□□ -0.75
CD44-236ENST00000533222 GABBR2O75899 941 aa10.39□□□□□ -0.75
CD44-236ENST00000533222 HAP1P54257 671 aaPredicted RBP10.39□□□□□ -0.75
CD44-236ENST00000533222 EFCAB3Q8N7B9 438 aa10.39□□□□□ -0.75
CD44-236ENST00000533222 TTLL13PA6NNM8 815 aa10.38□□□□□ -0.75
CD44-236ENST00000533222 TIE1P35590 1138 aa10.36□□□□□ -0.75
CD44-236ENST00000533222 MFRPQ9BY79 579 aa10.36□□□□□ -0.75
CD44-236ENST00000533222 PHF8Q9UPP1 1060 aa10.33□□□□□ -0.76
CD44-236ENST00000533222 TSHZ2Q9NRE2 1034 aa10.32□□□□□ -0.76
CD44-236ENST00000533222 ATN1P54259 1190 aaPredicted RBP10.31□□□□□ -0.76
CD44-236ENST00000533222 TRIM35Q9UPQ4 493 aa10.31□□□□□ -0.76
CD44-236ENST00000533222 ATMINO43313 823 aaPredicted RBP10.3□□□□□ -0.76
CD44-236ENST00000533222 FBXO22Q8NEZ5 403 aa10.3□□□□□ -0.76
CD44-236ENST00000533222 SP7Q8TDD2 431 aaPredicted RBP10.3□□□□□ -0.76
CD44-236ENST00000533222 CLCN6P51797 869 aa10.29□□□□□ -0.76
CD44-236ENST00000533222 GOLGA2Q08379 1002 aa10.27□□□□□ -0.77
CD44-236ENST00000533222 ASTLQ6HA08 431 aaPredicted RBP10.27□□□□□ -0.77
CD44-236ENST00000533222 MS4A4AQ96JQ5 239 aa10.27□□□□□ -0.77
CD44-236ENST00000533222 PPP1R37O75864 691 aa10.26□□□□□ -0.77
CD44-236ENST00000533222 SOX12O15370 315 aa10.25□□□□□ -0.77
CD44-236ENST00000533222 MKRN3Q13064 507 aaKnown RBP10.25□□□□□ -0.77
CD44-236ENST00000533222 PELP1Q8IZL8 1130 aaKnown RBP10.25□□□□□ -0.77
CD44-236ENST00000533222 POTEIP0CG38 1075 aa10.24□□□□□ -0.77
CD44-236ENST00000533222 NLRP6P59044 892 aa10.23□□□□□ -0.77
CD44-236ENST00000533222 KDM2AQ9Y2K7 1162 aa10.23□□□□□ -0.77
CD44-236ENST00000533222 MYT1Q01538 1121 aa10.21□□□□□ -0.77
CD44-236ENST00000533222 DCBLD2Q96PD2 775 aa10.21□□□□□ -0.77
CD44-236ENST00000533222 RYDENQ9NUL5 291 aaKnown RBP10.21□□□□□ -0.77
CD44-236ENST00000533222 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.2□□□□□ -0.78
CD44-236ENST00000533222 CADPS2Q86UW7 1296 aa10.19□□□□□ -0.78
CD44-236ENST00000533222 DPY19L2Q6NUT2 758 aa10.18□□□□□ -0.78
CD44-236ENST00000533222 ILDR1Q86SU0 546 aaPredicted RBP10.18□□□□□ -0.78
CD44-236ENST00000533222 PDCD7Q8N8D1 485 aaKnown RBP10.17□□□□□ -0.78
CD44-236ENST00000533222 IRX5P78411 483 aaPredicted RBP10.16□□□□□ -0.78
CD44-236ENST00000533222 VSIG10Q8N0Z9 540 aa10.15□□□□□ -0.78
CD44-236ENST00000533222 COLQQ9Y215 455 aaPredicted RBP10.14□□□□□ -0.79
CD44-236ENST00000533222 POTEFA5A3E0 1075 aa10.12□□□□□ -0.79
CD44-236ENST00000533222 IER5LQ5T953 404 aa10.12□□□□□ -0.79
CD44-236ENST00000533222 OCEL1Q9H607 264 aa10.09□□□□□ -0.79
CD44-236ENST00000533222 METRNQ9UJH8 293 aa10.09□□□□□ -0.79
CD44-236ENST00000533222 PLCG2P16885 1265 aa10.08□□□□□ -0.8
CD44-236ENST00000533222 SLC39A7Q92504 469 aa10.07□□□□□ -0.8
CD44-236ENST00000533222 SEC24BO95487 1268 aa10.05□□□□□ -0.8
CD44-236ENST00000533222 MICALL2Q8IY33 904 aa10.05□□□□□ -0.8
CD44-236ENST00000533222 NCKAP5LQ9HCH0 1330 aa10.04□□□□□ -0.8
CD44-236ENST00000533222 C7P10643 843 aa10.03□□□□□ -0.8
CD44-236ENST00000533222 TTBK1Q5TCY1 1321 aaPredicted RBP10.02□□□□□ -0.81
CD44-236ENST00000533222 BOLA1Q9Y3E2 137 aa10.01□□□□□ -0.81
CD44-236ENST00000533222 TMEM121BQ9BXQ6 578 aaPredicted RBP9.98□□□□□ -0.81
CD44-236ENST00000533222 CRISPLD2Q9H0B8 497 aa9.98□□□□□ -0.81
CD44-236ENST00000533222 TMEM92Q6UXU6 159 aa9.95□□□□□ -0.82
CD44-236ENST00000533222 LARP6Q9BRS8 491 aaKnown RBP9.95□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 73.6 ms