RNA–Protein interactions for RNA: ENST00000527889.5

CD44-226, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-226ENST00000527889 MYO15BQ96JP2 1530 aa7.65□□□□□ -1.18
CD44-226ENST00000527889 SCRIBQ14160 1630 aa7.64□□□□□ -1.19
CD44-226ENST00000527889 PRKCSHP14314 528 aaPredicted RBP7.64□□□□□ -1.19
CD44-226ENST00000527889 RB1CC1Q8TDY2 1594 aa7.63□□□□□ -1.19
CD44-226ENST00000527889 MIER1Q8N108 512 aa7.63□□□□□ -1.19
CD44-226ENST00000527889 FARP1Q9Y4F1 1045 aaPredicted RBP7.62□□□□□ -1.19
CD44-226ENST00000527889 PLCD3Q8N3E9 789 aa7.61□□□□□ -1.19
CD44-226ENST00000527889 TAOK2Q9UL54 1235 aa7.61□□□□□ -1.19
CD44-226ENST00000527889 BBXQ8WY36 941 aaPredicted RBP7.55□□□□□ -1.2
CD44-226ENST00000527889 KDM2AQ9Y2K7 1162 aa7.55□□□□□ -1.2
CD44-226ENST00000527889 NPM1P06748 294 aaKnown RBP eCLIP7.53□□□□□ -1.2
CD44-226ENST00000527889 EVX2Q03828 476 aa7.53□□□□□ -1.2
CD44-226ENST00000527889 ZBTB4Q9P1Z0 1013 aaPredicted RBP7.53□□□□□ -1.2
CD44-226ENST00000527889 C19orf67A6NJJ6 358 aa7.52□□□□□ -1.21
CD44-226ENST00000527889 PLEKHG5O94827 1062 aa7.52□□□□□ -1.21
CD44-226ENST00000527889 SPOCK2Q92563 424 aa7.52□□□□□ -1.21
CD44-226ENST00000527889 CECR2Q9BXF3 1484 aa7.5□□□□□ -1.21
CD44-226ENST00000527889 HAX1O00165 279 aa7.5□□□□□ -1.21
CD44-226ENST00000527889 ECM2O94769 699 aaPredicted RBP7.5□□□□□ -1.21
CD44-226ENST00000527889 NUBP1P53384 320 aa7.5□□□□□ -1.21
CD44-226ENST00000527889 PAXIP1Q6ZW49 1069 aaPredicted RBP7.5□□□□□ -1.21
CD44-226ENST00000527889 RASEFQ8IZ41 740 aa7.5□□□□□ -1.21
CD44-226ENST00000527889 KLHL34Q8N239 644 aa7.5□□□□□ -1.21
CD44-226ENST00000527889 TPRNQ4KMQ1 711 aa7.48□□□□□ -1.21
CD44-226ENST00000527889 ZBTB47Q9UFB7 747 aaPredicted RBP7.48□□□□□ -1.21
CD44-226ENST00000527889 CD44P16070 742 aaKnown RBP7.47□□□□□ -1.21
CD44-226ENST00000527889 CFAP44Q96MT7 982 aa7.46□□□□□ -1.22
CD44-226ENST00000527889 CUX2O14529 1486 aa7.46□□□□□ -1.22
CD44-226ENST00000527889 RGL2O15211 777 aa7.44□□□□□ -1.22
CD44-226ENST00000527889 BICRAQ9NZM4 1560 aa7.43□□□□□ -1.22
CD44-226ENST00000527889 TSPYL2Q9H2G4 693 aaPredicted RBP7.43□□□□□ -1.22
CD44-226ENST00000527889 ZRANB1Q9UGI0 708 aa7.42□□□□□ -1.22
CD44-226ENST00000527889 SPRYD3Q8NCJ5 442 aa7.41□□□□□ -1.22
CD44-226ENST00000527889 TSHZ2Q9NRE2 1034 aa7.41□□□□□ -1.22
CD44-226ENST00000527889 PHF12Q96QT6 1004 aa7.4□□□□□ -1.22
CD44-226ENST00000527889 CCDC61Q9Y6R9 512 aa7.4□□□□□ -1.22
CD44-226ENST00000527889 ZNF579Q8NAF0 562 aaKnown RBP7.39□□□□□ -1.23
CD44-226ENST00000527889 FAM212AQ96EL1 285 aa7.38□□□□□ -1.23
CD44-226ENST00000527889 PAK3O75914 559 aaPredicted RBP7.37□□□□□ -1.23
CD44-226ENST00000527889 DCAF8Q5TAQ9 597 aa7.37□□□□□ -1.23
CD44-226ENST00000527889 SP7Q8TDD2 431 aaPredicted RBP7.36□□□□□ -1.23
CD44-226ENST00000527889 CIZ1Q9ULV3 898 aaPredicted RBP7.34□□□□□ -1.23
CD44-226ENST00000527889 CC2D2AQ9P2K1 1620 aa7.34□□□□□ -1.24
CD44-226ENST00000527889 SUPT5HO00267 1087 aaKnown RBP7.33□□□□□ -1.24
CD44-226ENST00000527889 CHGAP10645 457 aaKnown RBP7.33□□□□□ -1.24
CD44-226ENST00000527889 GSE1Q14687 1217 aa7.33□□□□□ -1.24
CD44-226ENST00000527889 KIF12Q96FN5 646 aa7.33□□□□□ -1.24
CD44-226ENST00000527889 GABBR2O75899 941 aa7.32□□□□□ -1.24
CD44-226ENST00000527889 PYGBP11216 843 aa7.32□□□□□ -1.24
CD44-226ENST00000527889 WIZO95785 1651 aa7.31□□□□□ -1.24
CD44-226ENST00000527889 SMARCA4P51532 1647 aa7.3□□□□□ -1.24
CD44-226ENST00000527889 MAP3K13O43283 966 aa7.3□□□□□ -1.24
CD44-226ENST00000527889 GALR2O43603 387 aaPredicted RBP7.3□□□□□ -1.24
CD44-226ENST00000527889 MS4A3Q96HJ5 214 aa7.3□□□□□ -1.24
CD44-226ENST00000527889 MROH2BQ7Z745 1585 aa7.29□□□□□ -1.24
CD44-226ENST00000527889 CHRM1P11229 460 aaPredicted RBP7.27□□□□□ -1.25
CD44-226ENST00000527889 BAZ1AQ9NRL2 1556 aaPredicted RBP7.27□□□□□ -1.25
CD44-226ENST00000527889 NBR1Q14596 966 aa7.26□□□□□ -1.25
CD44-226ENST00000527889 IFNL1Q8IU54 200 aa7.26□□□□□ -1.25
CD44-226ENST00000527889 HS6ST3Q8IZP7 471 aa7.26□□□□□ -1.25
CD44-226ENST00000527889 TRPC6Q9Y210 931 aa7.26□□□□□ -1.25
CD44-226ENST00000527889 RNF25Q96BH1 459 aaPredicted RBP7.25□□□□□ -1.25
CD44-226ENST00000527889 PCDHB13Q9Y5F0 798 aa7.25□□□□□ -1.25
CD44-226ENST00000527889 RSF1Q96T23 1441 aaPredicted RBP7.25□□□□□ -1.25
CD44-226ENST00000527889 SOCS7O14512 581 aa7.24□□□□□ -1.25
CD44-226ENST00000527889 PCDHB8Q9UN66 801 aa7.24□□□□□ -1.25
CD44-226ENST00000527889 POTEIP0CG38 1075 aa7.22□□□□□ -1.25
CD44-226ENST00000527889 SGIP1Q9BQI5 828 aa7.22□□□□□ -1.25
CD44-226ENST00000527889 CLCN6P51797 869 aa7.21□□□□□ -1.26
CD44-226ENST00000527889 LMTK3Q96Q04 1460 aa7.21□□□□□ -1.26
CD44-226ENST00000527889 EIF4G1Q04637 1599 aaKnown RBP7.18□□□□□ -1.26
CD44-226ENST00000527889 NKX1-1Q15270 411 aaPredicted RBP7.18□□□□□ -1.26
CD44-226ENST00000527889 BMP2KQ9NSY1 1161 aaPredicted RBP7.18□□□□□ -1.26
CD44-226ENST00000527889 ILDR2Q71H61 639 aa7.17□□□□□ -1.26
CD44-226ENST00000527889 ZNF467Q7Z7K2 595 aaPredicted RBP7.17□□□□□ -1.26
CD44-226ENST00000527889 PEG3Q9GZU2 1588 aa7.16□□□□□ -1.26
CD44-226ENST00000527889 RIOK3O14730 519 aaKnown RBP7.16□□□□□ -1.26
CD44-226ENST00000527889 TIMELESSQ9UNS1 1208 aa7.16□□□□□ -1.26
CD44-226ENST00000527889 TOP2AP11388 1531 aaKnown RBP7.16□□□□□ -1.26
CD44-226ENST00000527889 TTLL13PA6NNM8 815 aa7.15□□□□□ -1.26
CD44-226ENST00000527889 ATMINO43313 823 aaPredicted RBP7.15□□□□□ -1.26
CD44-226ENST00000527889 GTPBP6O43824 516 aaPredicted RBP7.15□□□□□ -1.26
CD44-226ENST00000527889 PELP1Q8IZL8 1130 aaKnown RBP7.15□□□□□ -1.26
CD44-226ENST00000527889 ERCC6Q03468 1493 aa7.15□□□□□ -1.27
CD44-226ENST00000527889 TIE1P35590 1138 aa7.14□□□□□ -1.27
CD44-226ENST00000527889 PSEN1P49768 467 aa7.14□□□□□ -1.27
CD44-226ENST00000527889 ATN1P54259 1190 aaPredicted RBP7.14□□□□□ -1.27
CD44-226ENST00000527889 ASTLQ6HA08 431 aaPredicted RBP7.14□□□□□ -1.27
CD44-226ENST00000527889 DCBLD2Q96PD2 775 aa7.14□□□□□ -1.27
CD44-226ENST00000527889 TMEM106CQ9BVX2 250 aa7.14□□□□□ -1.27
CD44-226ENST00000527889 SMARCA2P51531 1590 aa7.13□□□□□ -1.27
CD44-226ENST00000527889 TULP1O00294 542 aaPredicted RBP7.12□□□□□ -1.27
CD44-226ENST00000527889 PDAP1Q13442 181 aaKnown RBP7.12□□□□□ -1.27
CD44-226ENST00000527889 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP7.11□□□□□ -1.27
CD44-226ENST00000527889 ZFP91Q96JP5 570 aaPredicted RBP7.11□□□□□ -1.27
CD44-226ENST00000527889 GTF3C3Q9Y5Q9 886 aa7.11□□□□□ -1.27
CD44-226ENST00000527889 ATAD2BQ9ULI0 1458 aa7.11□□□□□ -1.27
CD44-226ENST00000527889 VGFO15240 615 aaPredicted RBP7.1□□□□□ -1.27
CD44-226ENST00000527889 PRDM2Q13029 1718 aa7.1□□□□□ -1.27
CD44-226ENST00000527889 TRIM35Q9UPQ4 493 aa7.09□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms