RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 PAK3O75914 559 aaPredicted RBP12.36□□□□□ -0.43
CD44-217ENST00000525348 FAM212AQ96EL1 285 aa12.33□□□□□ -0.44
CD44-217ENST00000525348 DCAF8Q5TAQ9 597 aa12.32□□□□□ -0.44
CD44-217ENST00000525348 GABBR2O75899 941 aa12.29□□□□□ -0.44
CD44-217ENST00000525348 GSE1Q14687 1217 aa12.25□□□□□ -0.45
CD44-217ENST00000525348 KIF12Q96FN5 646 aa12.25□□□□□ -0.45
CD44-217ENST00000525348 CIZ1Q9ULV3 898 aaPredicted RBP12.24□□□□□ -0.45
CD44-217ENST00000525348 GALR2O43603 387 aaPredicted RBP12.22□□□□□ -0.45
CD44-217ENST00000525348 PYGBP11216 843 aa12.22□□□□□ -0.45
CD44-217ENST00000525348 MAP3K13O43283 966 aa12.21□□□□□ -0.45
CD44-217ENST00000525348 MS4A3Q96HJ5 214 aa12.21□□□□□ -0.45
CD44-217ENST00000525348 CLCN6P51797 869 aa12.15□□□□□ -0.46
CD44-217ENST00000525348 PKD2Q13563 968 aa12.14□□□□□ -0.47
CD44-217ENST00000525348 CHRM1P11229 460 aaPredicted RBP12.13□□□□□ -0.47
CD44-217ENST00000525348 TRPC6Q9Y210 931 aa12.13□□□□□ -0.47
CD44-217ENST00000525348 PCDHB13Q9Y5F0 798 aa12.13□□□□□ -0.47
CD44-217ENST00000525348 IFNL1Q8IU54 200 aa12.12□□□□□ -0.47
CD44-217ENST00000525348 POTEIP0CG38 1075 aa12.09□□□□□ -0.47
CD44-217ENST00000525348 SGIP1Q9BQI5 828 aa12.09□□□□□ -0.47
CD44-217ENST00000525348 PCDHB8Q9UN66 801 aa12.08□□□□□ -0.48
CD44-217ENST00000525348 TRIM41Q8WV44 630 aa12.06□□□□□ -0.48
CD44-217ENST00000525348 RNF25Q96BH1 459 aaPredicted RBP12.05□□□□□ -0.48
CD44-217ENST00000525348 ECM2O94769 699 aaPredicted RBP12.02□□□□□ -0.49
CD44-217ENST00000525348 BMP2KQ9NSY1 1161 aaPredicted RBP12.01□□□□□ -0.49
CD44-217ENST00000525348 DCBLD2Q96PD2 775 aa12□□□□□ -0.49
CD44-217ENST00000525348 ZNF467Q7Z7K2 595 aaPredicted RBP11.99□□□□□ -0.49
CD44-217ENST00000525348 ATMINO43313 823 aaPredicted RBP11.98□□□□□ -0.49
CD44-217ENST00000525348 RGL2O15211 777 aa11.97□□□□□ -0.49
CD44-217ENST00000525348 TIE1P35590 1138 aa11.97□□□□□ -0.49
CD44-217ENST00000525348 ASTLQ6HA08 431 aaPredicted RBP11.97□□□□□ -0.49
CD44-217ENST00000525348 TTLL13PA6NNM8 815 aa11.96□□□□□ -0.49
CD44-217ENST00000525348 PELP1Q8IZL8 1130 aaKnown RBP11.96□□□□□ -0.49
CD44-217ENST00000525348 ATN1P54259 1190 aaPredicted RBP11.95□□□□□ -0.5
CD44-217ENST00000525348 RTN4Q9NQC3 1192 aaKnown RBP11.94□□□□□ -0.5
CD44-217ENST00000525348 RIOK3O14730 519 aaKnown RBP11.93□□□□□ -0.5
CD44-217ENST00000525348 TMEM106CQ9BVX2 250 aa11.93□□□□□ -0.5
CD44-217ENST00000525348 PSEN1P49768 467 aa11.91□□□□□ -0.5
CD44-217ENST00000525348 PDAP1Q13442 181 aaKnown RBP11.9□□□□□ -0.5
CD44-217ENST00000525348 AMER1Q5JTC6 1135 aaPredicted RBP11.88□□□□□ -0.51
CD44-217ENST00000525348 TRIM35Q9UPQ4 493 aa11.86□□□□□ -0.51
CD44-217ENST00000525348 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.85□□□□□ -0.51
CD44-217ENST00000525348 VGFO15240 615 aaPredicted RBP11.85□□□□□ -0.51
CD44-217ENST00000525348 ZFP91Q96JP5 570 aaPredicted RBP11.85□□□□□ -0.51
CD44-217ENST00000525348 POTEFA5A3E0 1075 aa11.78□□□□□ -0.52
CD44-217ENST00000525348 SLC39A7Q92504 469 aa11.78□□□□□ -0.52
CD44-217ENST00000525348 CABP2Q9NPB3 220 aa11.78□□□□□ -0.52
CD44-217ENST00000525348 METRNQ9UJH8 293 aa11.78□□□□□ -0.52
CD44-217ENST00000525348 BCL11BQ9C0K0 894 aaPredicted RBP11.76□□□□□ -0.53
CD44-217ENST00000525348 C7P10643 843 aa11.75□□□□□ -0.53
CD44-217ENST00000525348 COLQQ9Y215 455 aaPredicted RBP11.74□□□□□ -0.53
CD44-217ENST00000525348 STK25O00506 426 aa11.73□□□□□ -0.53
CD44-217ENST00000525348 IER5LQ5T953 404 aa11.73□□□□□ -0.53
CD44-217ENST00000525348 EFCAB3Q8N7B9 438 aa11.72□□□□□ -0.53
CD44-217ENST00000525348 TAOK2Q9UL54 1235 aa11.72□□□□□ -0.53
CD44-217ENST00000525348 STK24Q9Y6E0 443 aa11.72□□□□□ -0.53
CD44-217ENST00000525348 POTEB2H3BUK9 544 aa11.71□□□□□ -0.53
CD44-217ENST00000525348 IRX5P78411 483 aaPredicted RBP11.71□□□□□ -0.53
CD44-217ENST00000525348 GOLGA2Q08379 1002 aa11.69□□□□□ -0.54
CD44-217ENST00000525348 MKRN3Q13064 507 aaKnown RBP11.68□□□□□ -0.54
CD44-217ENST00000525348 HS6ST3Q8IZP7 471 aa11.68□□□□□ -0.54
CD44-217ENST00000525348 CHGAP10645 457 aaKnown RBP11.67□□□□□ -0.54
CD44-217ENST00000525348 DCAF8L2P0C7V8 631 aa11.66□□□□□ -0.54
CD44-217ENST00000525348 ILDR1Q86SU0 546 aaPredicted RBP11.66□□□□□ -0.54
CD44-217ENST00000525348 POTEJP0CG39 1038 aa11.65□□□□□ -0.54
CD44-217ENST00000525348 PDCD7Q8N8D1 485 aaKnown RBP11.65□□□□□ -0.54
CD44-217ENST00000525348 SEC24BO95487 1268 aa11.64□□□□□ -0.55
CD44-217ENST00000525348 LHX8Q68G74 356 aa11.63□□□□□ -0.55
CD44-217ENST00000525348 OCEL1Q9H607 264 aa11.63□□□□□ -0.55
CD44-217ENST00000525348 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.63□□□□□ -0.55
CD44-217ENST00000525348 PLCG2P16885 1265 aa11.62□□□□□ -0.55
CD44-217ENST00000525348 PHF8Q9UPP1 1060 aa11.61□□□□□ -0.55
CD44-217ENST00000525348 DPY19L2Q6NUT2 758 aa11.6□□□□□ -0.55
CD44-217ENST00000525348 SOX12O15370 315 aa11.59□□□□□ -0.55
CD44-217ENST00000525348 MS4A4AQ96JQ5 239 aa11.59□□□□□ -0.55
CD44-217ENST00000525348 MFRPQ9BY79 579 aa11.59□□□□□ -0.55
CD44-217ENST00000525348 NKX1-1Q15270 411 aaPredicted RBP11.58□□□□□ -0.56
CD44-217ENST00000525348 FBXO22Q8NEZ5 403 aa11.57□□□□□ -0.56
CD44-217ENST00000525348 DNAJC5Q9H3Z4 198 aa11.57□□□□□ -0.56
CD44-217ENST00000525348 NLRP6P59044 892 aa11.51□□□□□ -0.57
CD44-217ENST00000525348 OTUD5Q96G74 571 aa11.51□□□□□ -0.57
CD44-217ENST00000525348 PPP1R37O75864 691 aa11.45□□□□□ -0.58
CD44-217ENST00000525348 BOLA1Q9Y3E2 137 aa11.44□□□□□ -0.58
CD44-217ENST00000525348 L3MBTL3Q96JM7 780 aaPredicted RBP11.43□□□□□ -0.58
CD44-217ENST00000525348 GTPBP6O43824 516 aaPredicted RBP11.42□□□□□ -0.58
CD44-217ENST00000525348 TMEM121BQ9BXQ6 578 aaPredicted RBP11.42□□□□□ -0.58
CD44-217ENST00000525348 MAMSTRQ6ZN01 415 aa11.41□□□□□ -0.58
CD44-217ENST00000525348 MICALL2Q8IY33 904 aa11.41□□□□□ -0.58
CD44-217ENST00000525348 BBXQ8WY36 941 aaPredicted RBP11.41□□□□□ -0.58
CD44-217ENST00000525348 SCUBE2Q9NQ36 999 aa11.39□□□□□ -0.59
CD44-217ENST00000525348 TMEM92Q6UXU6 159 aa11.34□□□□□ -0.59
CD44-217ENST00000525348 C3orf67Q6ZVT6 689 aa11.34□□□□□ -0.59
CD44-217ENST00000525348 G3V3G9 751 aa11.33□□□□□ -0.6
CD44-217ENST00000525348 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.33□□□□□ -0.6
CD44-217ENST00000525348 SLAIN1Q8ND83 568 aa11.32□□□□□ -0.6
CD44-217ENST00000525348 RYDENQ9NUL5 291 aaKnown RBP11.3□□□□□ -0.6
CD44-217ENST00000525348 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.27□□□□□ -0.61
CD44-217ENST00000525348 PAXIP1Q6ZW49 1069 aaPredicted RBP11.26□□□□□ -0.61
CD44-217ENST00000525348 SPRYD3Q8NCJ5 442 aa11.25□□□□□ -0.61
CD44-217ENST00000525348 CFAP44Q96MT7 982 aa11.24□□□□□ -0.61
CD44-217ENST00000525348 KIF3CO14782 793 aa11.21□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms