RNA–Protein interactions for RNA: ENST00000514610.1

HMGCS1-207, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 2

Gene HMGCS1, Length 555 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-207ENST00000514610 SLC24A1O60721 1099 aa13.29□□□□□ -0.28
HMGCS1-207ENST00000514610 NPM1P06748 294 aaKnown RBP eCLIP13.28□□□□□ -0.28
HMGCS1-207ENST00000514610 FARP1Q9Y4F1 1045 aaPredicted RBP13.28□□□□□ -0.28
HMGCS1-207ENST00000514610 FAM212AQ96EL1 285 aa13.27□□□□□ -0.29
HMGCS1-207ENST00000514610 TRIM41Q8WV44 630 aa13.26□□□□□ -0.29
HMGCS1-207ENST00000514610 C19orf67A6NJJ6 358 aa13.23□□□□□ -0.29
HMGCS1-207ENST00000514610 RNF25Q96BH1 459 aaPredicted RBP13.22□□□□□ -0.29
HMGCS1-207ENST00000514610 TSPYL2Q9H2G4 693 aaPredicted RBP13.14□□□□□ -0.31
HMGCS1-207ENST00000514610 CHRM1P11229 460 aaPredicted RBP13.13□□□□□ -0.31
HMGCS1-207ENST00000514610 PYGBP11216 843 aa13.12□□□□□ -0.31
HMGCS1-207ENST00000514610 PLCB2Q00722 1185 aa13.11□□□□□ -0.31
HMGCS1-207ENST00000514610 RIOK3O14730 519 aaKnown RBP13.09□□□□□ -0.31
HMGCS1-207ENST00000514610 CHGAP10645 457 aaKnown RBP13.07□□□□□ -0.32
HMGCS1-207ENST00000514610 BBXQ8WY36 941 aaPredicted RBP13.07□□□□□ -0.32
HMGCS1-207ENST00000514610 CCDC61Q9Y6R9 512 aa13.05□□□□□ -0.32
HMGCS1-207ENST00000514610 GABBR2O75899 941 aa13.03□□□□□ -0.32
HMGCS1-207ENST00000514610 HS6ST3Q8IZP7 471 aa13.02□□□□□ -0.33
HMGCS1-207ENST00000514610 VGFO15240 615 aaPredicted RBP12.98□□□□□ -0.33
HMGCS1-207ENST00000514610 CD44P16070 742 aaKnown RBP12.98□□□□□ -0.33
HMGCS1-207ENST00000514610 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.97□□□□□ -0.33
HMGCS1-207ENST00000514610 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.94□□□□□ -0.34
HMGCS1-207ENST00000514610 PAK3O75914 559 aaPredicted RBP12.94□□□□□ -0.34
HMGCS1-207ENST00000514610 PAXIP1Q6ZW49 1069 aaPredicted RBP12.94□□□□□ -0.34
HMGCS1-207ENST00000514610 ZFP91Q96JP5 570 aaPredicted RBP12.94□□□□□ -0.34
HMGCS1-207ENST00000514610 SGIP1Q9BQI5 828 aa12.94□□□□□ -0.34
HMGCS1-207ENST00000514610 TAOK2Q9UL54 1235 aa12.94□□□□□ -0.34
HMGCS1-207ENST00000514610 STK25O00506 426 aa12.92□□□□□ -0.34
HMGCS1-207ENST00000514610 DNAJC5Q9H3Z4 198 aa12.92□□□□□ -0.34
HMGCS1-207ENST00000514610 PCDHB8Q9UN66 801 aa12.92□□□□□ -0.34
HMGCS1-207ENST00000514610 PCDHB13Q9Y5F0 798 aa12.92□□□□□ -0.34
HMGCS1-207ENST00000514610 ZRANB1Q9UGI0 708 aa12.91□□□□□ -0.34
HMGCS1-207ENST00000514610 HAP1P54257 671 aaPredicted RBP12.9□□□□□ -0.34
HMGCS1-207ENST00000514610 NKX1-1Q15270 411 aaPredicted RBP12.9□□□□□ -0.34
HMGCS1-207ENST00000514610 ZNF467Q7Z7K2 595 aaPredicted RBP12.9□□□□□ -0.34
HMGCS1-207ENST00000514610 CFAP44Q96MT7 982 aa12.9□□□□□ -0.34
HMGCS1-207ENST00000514610 KIF12Q96FN5 646 aa12.89□□□□□ -0.35
HMGCS1-207ENST00000514610 MAP3K13O43283 966 aa12.88□□□□□ -0.35
HMGCS1-207ENST00000514610 BCL11BQ9C0K0 894 aaPredicted RBP12.88□□□□□ -0.35
HMGCS1-207ENST00000514610 PHF12Q96QT6 1004 aa12.87□□□□□ -0.35
HMGCS1-207ENST00000514610 ZNF579Q8NAF0 562 aaKnown RBP12.86□□□□□ -0.35
HMGCS1-207ENST00000514610 SPRYD3Q8NCJ5 442 aa12.86□□□□□ -0.35
HMGCS1-207ENST00000514610 STK24Q9Y6E0 443 aa12.86□□□□□ -0.35
HMGCS1-207ENST00000514610 IFNL1Q8IU54 200 aa12.85□□□□□ -0.35
HMGCS1-207ENST00000514610 PDAP1Q13442 181 aaKnown RBP12.83□□□□□ -0.36
HMGCS1-207ENST00000514610 POTEIP0CG38 1075 aa12.79□□□□□ -0.36
HMGCS1-207ENST00000514610 PSEN1P49768 467 aa12.79□□□□□ -0.36
HMGCS1-207ENST00000514610 GTPBP6O43824 516 aaPredicted RBP12.77□□□□□ -0.37
HMGCS1-207ENST00000514610 CLCN6P51797 869 aa12.75□□□□□ -0.37
HMGCS1-207ENST00000514610 TSHZ2Q9NRE2 1034 aa12.75□□□□□ -0.37
HMGCS1-207ENST00000514610 LHX8Q68G74 356 aa12.72□□□□□ -0.37
HMGCS1-207ENST00000514610 MS4A3Q96HJ5 214 aa12.71□□□□□ -0.37
HMGCS1-207ENST00000514610 TRPC6Q9Y210 931 aa12.7□□□□□ -0.38
HMGCS1-207ENST00000514610 KDM2AQ9Y2K7 1162 aa12.7□□□□□ -0.38
HMGCS1-207ENST00000514610 VSIG10Q8N0Z9 540 aa12.69□□□□□ -0.38
HMGCS1-207ENST00000514610 GALR2O43603 387 aaPredicted RBP12.64□□□□□ -0.39
HMGCS1-207ENST00000514610 DCBLD2Q96PD2 775 aa12.64□□□□□ -0.39
HMGCS1-207ENST00000514610 CABP2Q9NPB3 220 aa12.64□□□□□ -0.39
HMGCS1-207ENST00000514610 EFCAB3Q8N7B9 438 aa12.62□□□□□ -0.39
HMGCS1-207ENST00000514610 MFRPQ9BY79 579 aa12.62□□□□□ -0.39
HMGCS1-207ENST00000514610 TMEM106CQ9BVX2 250 aa12.6□□□□□ -0.39
HMGCS1-207ENST00000514610 RYDENQ9NUL5 291 aaKnown RBP12.59□□□□□ -0.39
HMGCS1-207ENST00000514610 FBXO22Q8NEZ5 403 aa12.55□□□□□ -0.4
HMGCS1-207ENST00000514610 PHF8Q9UPP1 1060 aa12.55□□□□□ -0.4
HMGCS1-207ENST00000514610 TIE1P35590 1138 aa12.54□□□□□ -0.4
HMGCS1-207ENST00000514610 TTLL13PA6NNM8 815 aa12.53□□□□□ -0.4
HMGCS1-207ENST00000514610 BMP2KQ9NSY1 1161 aaPredicted RBP12.53□□□□□ -0.4
HMGCS1-207ENST00000514610 SOX12O15370 315 aa12.52□□□□□ -0.41
HMGCS1-207ENST00000514610 PPP1R37O75864 691 aa12.5□□□□□ -0.41
HMGCS1-207ENST00000514610 NLRP6P59044 892 aa12.5□□□□□ -0.41
HMGCS1-207ENST00000514610 MS4A4AQ96JQ5 239 aa12.48□□□□□ -0.41
HMGCS1-207ENST00000514610 CADPS2Q86UW7 1296 aa12.46□□□□□ -0.41
HMGCS1-207ENST00000514610 GOLGA2Q08379 1002 aa12.45□□□□□ -0.42
HMGCS1-207ENST00000514610 TRIM35Q9UPQ4 493 aa12.43□□□□□ -0.42
HMGCS1-207ENST00000514610 MKRN3Q13064 507 aaKnown RBP12.42□□□□□ -0.42
HMGCS1-207ENST00000514610 ATN1P54259 1190 aaPredicted RBP12.41□□□□□ -0.42
HMGCS1-207ENST00000514610 PELP1Q8IZL8 1130 aaKnown RBP12.41□□□□□ -0.42
HMGCS1-207ENST00000514610 ATMINO43313 823 aaPredicted RBP12.39□□□□□ -0.43
HMGCS1-207ENST00000514610 ILDR1Q86SU0 546 aaPredicted RBP12.39□□□□□ -0.43
HMGCS1-207ENST00000514610 ASTLQ6HA08 431 aaPredicted RBP12.38□□□□□ -0.43
HMGCS1-207ENST00000514610 POTEB2H3BUK9 544 aa12.37□□□□□ -0.43
HMGCS1-207ENST00000514610 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.35□□□□□ -0.432e-22■■□□□ 12.2
HMGCS1-207ENST00000514610 BCANQ96GW7 911 aa12.34□□□□□ -0.43
HMGCS1-207ENST00000514610 OTUD5Q96G74 571 aa12.31□□□□□ -0.44
HMGCS1-207ENST00000514610 DPY19L2Q6NUT2 758 aa12.3□□□□□ -0.44
HMGCS1-207ENST00000514610 PDCD7Q8N8D1 485 aaKnown RBP12.3□□□□□ -0.44
HMGCS1-207ENST00000514610 METRNQ9UJH8 293 aa12.29□□□□□ -0.44
HMGCS1-207ENST00000514610 IRX5P78411 483 aaPredicted RBP12.28□□□□□ -0.44
HMGCS1-207ENST00000514610 SLC39A7Q92504 469 aa12.26□□□□□ -0.45
HMGCS1-207ENST00000514610 IER5LQ5T953 404 aa12.25□□□□□ -0.45
HMGCS1-207ENST00000514610 NCKAP5LQ9HCH0 1330 aa12.25□□□□□ -0.45
HMGCS1-207ENST00000514610 C7P10643 843 aa12.22□□□□□ -0.45
HMGCS1-207ENST00000514610 OCEL1Q9H607 264 aa12.21□□□□□ -0.45
HMGCS1-207ENST00000514610 CRISPLD2Q9H0B8 497 aa12.2□□□□□ -0.46
HMGCS1-207ENST00000514610 WDR70Q9NW82 654 aa12.2□□□□□ -0.46
HMGCS1-207ENST00000514610 POTEJP0CG39 1038 aa12.19□□□□□ -0.46
HMGCS1-207ENST00000514610 KCNV2Q8TDN2 545 aa12.19□□□□□ -0.46
HMGCS1-207ENST00000514610 MICALL2Q8IY33 904 aa12.18□□□□□ -0.46
HMGCS1-207ENST00000514610 COLQQ9Y215 455 aaPredicted RBP12.18□□□□□ -0.46
HMGCS1-207ENST00000514610 LARP6Q9BRS8 491 aaKnown RBP12.17□□□□□ -0.46
HMGCS1-207ENST00000514610 POTEFA5A3E0 1075 aa12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms