RNA–Protein interactions for RNA: ENST00000509429.1

NIPBL-206, Transcript of NIPBL, cohesin loading factor, humanhuman

TSL 3

Gene NIPBL, Length 586 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPBL-206ENST00000509429 ASTLQ6HA08 431 aaPredicted RBP15.33■□□□□ 0.04
NIPBL-206ENST00000509429 SCUBE2Q9NQ36 999 aa15.29■□□□□ 0.04
NIPBL-206ENST00000509429 ATMINO43313 823 aaPredicted RBP15.26■□□□□ 0.03
NIPBL-206ENST00000509429 CDAN1Q8IWY9 1227 aa15.22■□□□□ 0.03
NIPBL-206ENST00000509429 STAG3Q9UJ98 1225 aa15.19■□□□□ 0.02
NIPBL-206ENST00000509429 MS4A3Q96HJ5 214 aa15.15■□□□□ 0.02
NIPBL-206ENST00000509429 NPM1P06748 294 aaKnown RBP eCLIP15.11■□□□□ 0.01
NIPBL-206ENST00000509429 ATN1P54259 1190 aaPredicted RBP15.02■□□□□ -0
NIPBL-206ENST00000509429 POTEFA5A3E0 1075 aa14.98□□□□□ -0.01
NIPBL-206ENST00000509429 MNX1P50219 401 aaPredicted RBP14.98□□□□□ -0.01
NIPBL-206ENST00000509429 MMRN1Q13201 1228 aa14.96□□□□□ -0.01
NIPBL-206ENST00000509429 SPNS2Q8IVW8 549 aa14.88□□□□□ -0.03
NIPBL-206ENST00000509429 ST18O60284 1047 aa14.84□□□□□ -0.03
NIPBL-206ENST00000509429 BMP2KQ9NSY1 1161 aaPredicted RBP14.83□□□□□ -0.04
NIPBL-206ENST00000509429 SEC24BO95487 1268 aa14.78□□□□□ -0.04
NIPBL-206ENST00000509429 COLQQ9Y215 455 aaPredicted RBP14.77□□□□□ -0.05
NIPBL-206ENST00000509429 TSPYL2Q9H2G4 693 aaPredicted RBP14.76□□□□□ -0.05
NIPBL-206ENST00000509429 CCDC61Q9Y6R9 512 aa14.76□□□□□ -0.05
NIPBL-206ENST00000509429 KIF12Q96FN5 646 aa14.75□□□□□ -0.05
NIPBL-206ENST00000509429 TIE1P35590 1138 aa14.74□□□□□ -0.05
NIPBL-206ENST00000509429 TRPC6Q9Y210 931 aa14.72□□□□□ -0.05
NIPBL-206ENST00000509429 SLAIN1Q8ND83 568 aa14.71□□□□□ -0.05
NIPBL-206ENST00000509429 TMEM121BQ9BXQ6 578 aaPredicted RBP14.63□□□□□ -0.07
NIPBL-206ENST00000509429 TTLL13PA6NNM8 815 aa14.61□□□□□ -0.07
NIPBL-206ENST00000509429 IER5LQ5T953 404 aa14.61□□□□□ -0.07
NIPBL-206ENST00000509429 SPDYE4A6NLX3 237 aa14.6□□□□□ -0.07
NIPBL-206ENST00000509429 MAP3K13O43283 966 aa14.59□□□□□ -0.07
NIPBL-206ENST00000509429 TRIM35Q9UPQ4 493 aa14.52□□□□□ -0.09
NIPBL-206ENST00000509429 SNPHO15079 494 aa14.46□□□□□ -0.09
NIPBL-206ENST00000509429 MARVELD3Q96A59 401 aa14.45□□□□□ -0.1
NIPBL-206ENST00000509429 PLCG2P16885 1265 aa14.39□□□□□ -0.11
NIPBL-206ENST00000509429 SGIP1Q9BQI5 828 aa14.36□□□□□ -0.11
NIPBL-206ENST00000509429 RASEFQ8IZ41 740 aa14.31□□□□□ -0.12
NIPBL-206ENST00000509429 KRTAP3-3Q9BYR6 98 aa14.31□□□□□ -0.12
NIPBL-206ENST00000509429 KRTAP3-2Q9BYR7 98 aa14.31□□□□□ -0.12
NIPBL-206ENST00000509429 PCDHB13Q9Y5F0 798 aa14.29□□□□□ -0.12
NIPBL-206ENST00000509429 IRX5P78411 483 aaPredicted RBP14.28□□□□□ -0.12
NIPBL-206ENST00000509429 EMP3P54852 163 aa14.27□□□□□ -0.13
NIPBL-206ENST00000509429 EIF2AK3Q9NZJ5 1116 aaKnown RBP14.27□□□□□ -0.13
NIPBL-206ENST00000509429 TMEM106CQ9BVX2 250 aa14.23□□□□□ -0.13
NIPBL-206ENST00000509429 HS3ST6Q96QI5 342 aa14.21□□□□□ -0.13
NIPBL-206ENST00000509429 POTEB3A0JP26 581 aa14.19□□□□□ -0.14
NIPBL-206ENST00000509429 PLEKHG5O94827 1062 aa14.19□□□□□ -0.14
NIPBL-206ENST00000509429 POTEBQ6S5H4 581 aa14.19□□□□□ -0.14
NIPBL-206ENST00000509429 OCEL1Q9H607 264 aa14.19□□□□□ -0.14
NIPBL-206ENST00000509429 IFNL1Q8IU54 200 aa14.17□□□□□ -0.14
NIPBL-206ENST00000509429 FAM205CA6NFA0 338 aa14.15□□□□□ -0.14
NIPBL-206ENST00000509429 MIER1Q8N108 512 aa14.09□□□□□ -0.15
NIPBL-206ENST00000509429 PROM2Q8N271 834 aa14.07□□□□□ -0.16
NIPBL-206ENST00000509429 RNF166Q96A37 237 aaPredicted RBP14.02□□□□□ -0.17
NIPBL-206ENST00000509429 C3orf67Q6ZVT6 689 aa13.99□□□□□ -0.17
NIPBL-206ENST00000509429 NUBP1P53384 320 aa13.91□□□□□ -0.18
NIPBL-206ENST00000509429 CSRNP3Q8WYN3 585 aa13.89□□□□□ -0.19
NIPBL-206ENST00000509429 L3MBTL3Q96JM7 780 aaPredicted RBP13.89□□□□□ -0.19
NIPBL-206ENST00000509429 PDCD7Q8N8D1 485 aaKnown RBP13.87□□□□□ -0.19
NIPBL-206ENST00000509429 MYT1LQ9UL68 1186 aa13.87□□□□□ -0.19
NIPBL-206ENST00000509429 FAM212AQ96EL1 285 aa13.86□□□□□ -0.19
NIPBL-206ENST00000509429 ZBTB47Q9UFB7 747 aaPredicted RBP13.84□□□□□ -0.19
NIPBL-206ENST00000509429 PLCD3Q8N3E9 789 aa13.82□□□□□ -0.2
NIPBL-206ENST00000509429 ERBB3P21860 1342 aa13.77□□□□□ -0.21
NIPBL-206ENST00000509429 HOXB1P14653 301 aaPredicted RBP13.76□□□□□ -0.21
NIPBL-206ENST00000509429 HOXB3P14651 431 aaPredicted RBP13.73□□□□□ -0.21
NIPBL-206ENST00000509429 PCDHB8Q9UN66 801 aa13.71□□□□□ -0.21
NIPBL-206ENST00000509429 MKRN3Q13064 507 aaKnown RBP13.7□□□□□ -0.22
NIPBL-206ENST00000509429 ZNF710Q8N1W2 664 aa13.7□□□□□ -0.22
NIPBL-206ENST00000509429 PTGER2P43116 358 aa13.68□□□□□ -0.22
NIPBL-206ENST00000509429 GOLGA2Q08379 1002 aa13.68□□□□□ -0.22
NIPBL-206ENST00000509429 PYGBP11216 843 aa13.67□□□□□ -0.22
NIPBL-206ENST00000509429 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.65□□□□□ -0.222e-13■■■■■ 62.8
NIPBL-206ENST00000509429 VARS2Q5ST30 1063 aaKnown RBP13.63□□□□□ -0.23
NIPBL-206ENST00000509429 DOK7Q18PE1 504 aa13.61□□□□□ -0.23
NIPBL-206ENST00000509429 DCAF8Q5TAQ9 597 aa13.59□□□□□ -0.23
NIPBL-206ENST00000509429 ZNF687Q8N1G0 1237 aa13.58□□□□□ -0.24
NIPBL-206ENST00000509429 ILDR1Q86SU0 546 aaPredicted RBP13.54□□□□□ -0.24
NIPBL-206ENST00000509429 RIMBP2O15034 1052 aa13.52□□□□□ -0.25
NIPBL-206ENST00000509429 G3V3G9 751 aa13.51□□□□□ -0.25
NIPBL-206ENST00000509429 DPY19L2Q6NUT2 758 aa13.5□□□□□ -0.25
NIPBL-206ENST00000509429 PLA2G2EQ9NZK7 142 aa13.5□□□□□ -0.25
NIPBL-206ENST00000509429 BOLA1Q9Y3E2 137 aa13.5□□□□□ -0.25
NIPBL-206ENST00000509429 ZNF467Q7Z7K2 595 aaPredicted RBP13.49□□□□□ -0.25
NIPBL-206ENST00000509429 ANKRD13DQ6ZTN6 518 aa13.44□□□□□ -0.26
NIPBL-206ENST00000509429 ZSWIM6Q9HCJ5 1215 aa13.41□□□□□ -0.26
NIPBL-206ENST00000509429 PSEN1P49768 467 aa13.38□□□□□ -0.27
NIPBL-206ENST00000509429 GPR153Q6NV75 609 aa13.32□□□□□ -0.28
NIPBL-206ENST00000509429 HCSTQ9UBK5 93 aa13.31□□□□□ -0.28
NIPBL-206ENST00000509429 LSM11P83369 360 aaKnown RBP eCLIP13.3□□□□□ -0.28
NIPBL-206ENST00000509429 CHRM1P11229 460 aaPredicted RBP13.26□□□□□ -0.29
NIPBL-206ENST00000509429 GSE1Q14687 1217 aa13.24□□□□□ -0.29
NIPBL-206ENST00000509429 PDAP1Q13442 181 aaKnown RBP13.22□□□□□ -0.29
NIPBL-206ENST00000509429 CABP2Q9NPB3 220 aa13.22□□□□□ -0.29
NIPBL-206ENST00000509429 ZNF316A6NFI3 1004 aaPredicted RBP13.17□□□□□ -0.3
NIPBL-206ENST00000509429 ARSIQ5FYB1 569 aa13.15□□□□□ -0.3
NIPBL-206ENST00000509429 TMEM92Q6UXU6 159 aa13.14□□□□□ -0.31
NIPBL-206ENST00000509429 PBX2P40425 430 aa13.12□□□□□ -0.31
NIPBL-206ENST00000509429 IRX2Q9BZI1 471 aaPredicted RBP13.09□□□□□ -0.31
NIPBL-206ENST00000509429 EHMT2Q96KQ7 1210 aa13.08□□□□□ -0.32
NIPBL-206ENST00000509429 RGS20O76081 388 aa13.06□□□□□ -0.32
NIPBL-206ENST00000509429 MICALL2Q8IY33 904 aa13.06□□□□□ -0.32
NIPBL-206ENST00000509429 KHSRPQ92945 711 aaKnown RBP eCLIP13.03□□□□□ -0.32
NIPBL-206ENST00000509429 POTEEQ6S8J3 1075 aa12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms