RNA–Protein interactions for RNA: ENST00000504849.5

RFC1-208, Transcript of replication factor C subunit 1, humanhuman

TSL 3

Gene RFC1, Length 873 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFC1-208ENST00000504849 MS4A3Q96HJ5 214 aa13.3□□□□□ -0.28
RFC1-208ENST00000504849 SLC39A7Q92504 469 aa13.29□□□□□ -0.28
RFC1-208ENST00000504849 C7P10643 843 aa13.28□□□□□ -0.28
RFC1-208ENST00000504849 MAMSTRQ6ZN01 415 aa13.24□□□□□ -0.29
RFC1-208ENST00000504849 FAM163AQ96GL9 167 aaPredicted RBP13.23□□□□□ -0.29
RFC1-208ENST00000504849 NPM1P06748 294 aaKnown RBP eCLIP13.19□□□□□ -0.3
RFC1-208ENST00000504849 POTEFA5A3E0 1075 aa13.18□□□□□ -0.3
RFC1-208ENST00000504849 ATN1P54259 1190 aaPredicted RBP13.16□□□□□ -0.3
RFC1-208ENST00000504849 SCUBE2Q9NQ36 999 aa13.13□□□□□ -0.31
RFC1-208ENST00000504849 SPDYE4A6NLX3 237 aa13.06□□□□□ -0.32
RFC1-208ENST00000504849 CCDC61Q9Y6R9 512 aa13.05□□□□□ -0.32
RFC1-208ENST00000504849 CDAN1Q8IWY9 1227 aa13.04□□□□□ -0.32
RFC1-208ENST00000504849 TRPC6Q9Y210 931 aa13.04□□□□□ -0.32
RFC1-208ENST00000504849 BMP2KQ9NSY1 1161 aaPredicted RBP13.03□□□□□ -0.32
RFC1-208ENST00000504849 KIF12Q96FN5 646 aa12.99□□□□□ -0.33
RFC1-208ENST00000504849 TSPYL2Q9H2G4 693 aaPredicted RBP12.98□□□□□ -0.33
RFC1-208ENST00000504849 COLQQ9Y215 455 aaPredicted RBP12.96□□□□□ -0.33
RFC1-208ENST00000504849 TIE1P35590 1138 aa12.9□□□□□ -0.34
RFC1-208ENST00000504849 MAP3K13O43283 966 aa12.87□□□□□ -0.35
RFC1-208ENST00000504849 CSRNP3Q8WYN3 585 aa12.87□□□□□ -0.35
RFC1-208ENST00000504849 ST18O60284 1047 aa12.85□□□□□ -0.35
RFC1-208ENST00000504849 TTLL13PA6NNM8 815 aa12.84□□□□□ -0.35
RFC1-208ENST00000504849 MMRN1Q13201 1228 aa12.8□□□□□ -0.36
RFC1-208ENST00000504849 SEC24BO95487 1268 aa12.79□□□□□ -0.36
RFC1-208ENST00000504849 SPNS2Q8IVW8 549 aa12.77□□□□□ -0.37
RFC1-208ENST00000504849 IER5LQ5T953 404 aa12.75□□□□□ -0.37
RFC1-208ENST00000504849 RASEFQ8IZ41 740 aa12.75□□□□□ -0.37
RFC1-208ENST00000504849 PROM2Q8N271 834 aa12.75□□□□□ -0.37
RFC1-208ENST00000504849 SLAIN1Q8ND83 568 aa12.74□□□□□ -0.37
RFC1-208ENST00000504849 TRIM35Q9UPQ4 493 aa12.73□□□□□ -0.37
RFC1-208ENST00000504849 SGIP1Q9BQI5 828 aa12.61□□□□□ -0.39
RFC1-208ENST00000504849 TMEM121BQ9BXQ6 578 aaPredicted RBP12.6□□□□□ -0.39
RFC1-208ENST00000504849 PCDHB13Q9Y5F0 798 aa12.59□□□□□ -0.39
RFC1-208ENST00000504849 IRX5P78411 483 aaPredicted RBP12.57□□□□□ -0.4
RFC1-208ENST00000504849 IFNL1Q8IU54 200 aa12.56□□□□□ -0.4
RFC1-208ENST00000504849 MARVELD3Q96A59 401 aa12.54□□□□□ -0.4
RFC1-208ENST00000504849 PLCG2P16885 1265 aa12.52□□□□□ -0.41
RFC1-208ENST00000504849 TMEM106CQ9BVX2 250 aa12.51□□□□□ -0.41
RFC1-208ENST00000504849 MIER1Q8N108 512 aa12.49□□□□□ -0.41
RFC1-208ENST00000504849 NUBP1P53384 320 aa12.45□□□□□ -0.42
RFC1-208ENST00000504849 KRTAP3-3Q9BYR6 98 aa12.45□□□□□ -0.42
RFC1-208ENST00000504849 KRTAP3-2Q9BYR7 98 aa12.45□□□□□ -0.42
RFC1-208ENST00000504849 POTEB3A0JP26 581 aa12.44□□□□□ -0.42
RFC1-208ENST00000504849 SNPHO15079 494 aa12.44□□□□□ -0.42
RFC1-208ENST00000504849 POTEBQ6S5H4 581 aa12.44□□□□□ -0.42
RFC1-208ENST00000504849 PLEKHG5O94827 1062 aa12.43□□□□□ -0.42
RFC1-208ENST00000504849 OCEL1Q9H607 264 aa12.42□□□□□ -0.42
RFC1-208ENST00000504849 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.39□□□□□ -0.43
RFC1-208ENST00000504849 EMP3P54852 163 aa12.35□□□□□ -0.43
RFC1-208ENST00000504849 HS3ST6Q96QI5 342 aa12.33□□□□□ -0.44
RFC1-208ENST00000504849 PDCD7Q8N8D1 485 aaKnown RBP12.3□□□□□ -0.44
RFC1-208ENST00000504849 PLCD3Q8N3E9 789 aa12.28□□□□□ -0.44
RFC1-208ENST00000504849 FAM205CA6NFA0 338 aa12.26□□□□□ -0.45
RFC1-208ENST00000504849 FAM212AQ96EL1 285 aa12.26□□□□□ -0.45
RFC1-208ENST00000504849 EHMT2Q96KQ7 1210 aa12.22□□□□□ -0.45
RFC1-208ENST00000504849 ZBTB47Q9UFB7 747 aaPredicted RBP12.21□□□□□ -0.45
RFC1-208ENST00000504849 PCDHB8Q9UN66 801 aa12.2□□□□□ -0.46
RFC1-208ENST00000504849 PYGBP11216 843 aa12.17□□□□□ -0.46
RFC1-208ENST00000504849 C3orf67Q6ZVT6 689 aa12.17□□□□□ -0.46
RFC1-208ENST00000504849 L3MBTL3Q96JM7 780 aaPredicted RBP12.11□□□□□ -0.47
RFC1-208ENST00000504849 HOXB3P14651 431 aaPredicted RBP12.1□□□□□ -0.47
RFC1-208ENST00000504849 ILDR1Q86SU0 546 aaPredicted RBP12.06□□□□□ -0.48
RFC1-208ENST00000504849 RNF166Q96A37 237 aaPredicted RBP12.06□□□□□ -0.48
RFC1-208ENST00000504849 DCAF8Q5TAQ9 597 aa12.05□□□□□ -0.48
RFC1-208ENST00000504849 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.02□□□□□ -0.498e-8■■■■□ 23
RFC1-208ENST00000504849 HOXB1P14653 301 aaPredicted RBP12.01□□□□□ -0.49
RFC1-208ENST00000504849 MKRN3Q13064 507 aaKnown RBP12.01□□□□□ -0.49
RFC1-208ENST00000504849 DPY19L2Q6NUT2 758 aa11.99□□□□□ -0.49
RFC1-208ENST00000504849 GOLGA2Q08379 1002 aa11.95□□□□□ -0.5
RFC1-208ENST00000504849 ZNF467Q7Z7K2 595 aaPredicted RBP11.94□□□□□ -0.5
RFC1-208ENST00000504849 MYT1LQ9UL68 1186 aa11.94□□□□□ -0.5
RFC1-208ENST00000504849 ERBB3P21860 1342 aa11.93□□□□□ -0.5
RFC1-208ENST00000504849 PSEN1P49768 467 aa11.89□□□□□ -0.51
RFC1-208ENST00000504849 VARS2Q5ST30 1063 aaKnown RBP11.88□□□□□ -0.51
RFC1-208ENST00000504849 BOLA1Q9Y3E2 137 aa11.88□□□□□ -0.51
RFC1-208ENST00000504849 ZNF710Q8N1W2 664 aa11.87□□□□□ -0.51
RFC1-208ENST00000504849 CHRM1P11229 460 aaPredicted RBP11.85□□□□□ -0.51
RFC1-208ENST00000504849 DOK7Q18PE1 504 aa11.85□□□□□ -0.51
RFC1-208ENST00000504849 ZNF687Q8N1G0 1237 aa11.81□□□□□ -0.52
RFC1-208ENST00000504849 GSE1Q14687 1217 aa11.78□□□□□ -0.52
RFC1-208ENST00000504849 PTGER2P43116 358 aa11.75□□□□□ -0.53
RFC1-208ENST00000504849 PDAP1Q13442 181 aaKnown RBP11.75□□□□□ -0.53
RFC1-208ENST00000504849 CABP2Q9NPB3 220 aa11.75□□□□□ -0.53
RFC1-208ENST00000504849 G3V3G9 751 aa11.73□□□□□ -0.53
RFC1-208ENST00000504849 GPR153Q6NV75 609 aa11.73□□□□□ -0.53
RFC1-208ENST00000504849 TMEM92Q6UXU6 159 aa11.73□□□□□ -0.53
RFC1-208ENST00000504849 RIMBP2O15034 1052 aa11.71□□□□□ -0.53
RFC1-208ENST00000504849 ZSWIM6Q9HCJ5 1215 aa11.71□□□□□ -0.53
RFC1-208ENST00000504849 FKBP8Q14318 412 aa11.65□□□□□ -0.54
RFC1-208ENST00000504849 ANKRD13DQ6ZTN6 518 aa11.64□□□□□ -0.55
RFC1-208ENST00000504849 MICALL2Q8IY33 904 aa11.6□□□□□ -0.55
RFC1-208ENST00000504849 LSM11P83369 360 aaKnown RBP eCLIP11.59□□□□□ -0.55
RFC1-208ENST00000504849 PLA2G2EQ9NZK7 142 aa11.59□□□□□ -0.55
RFC1-208ENST00000504849 KLHL34Q8N239 644 aa11.58□□□□□ -0.56
RFC1-208ENST00000504849 ARSIQ5FYB1 569 aa11.57□□□□□ -0.56
RFC1-208ENST00000504849 EFCAB3Q8N7B9 438 aa11.55□□□□□ -0.56
RFC1-208ENST00000504849 KHSRPQ92945 711 aaKnown RBP eCLIP11.55□□□□□ -0.56
RFC1-208ENST00000504849 FBXO3Q9UK99 471 aa11.55□□□□□ -0.56
RFC1-208ENST00000504849 ZNF316A6NFI3 1004 aaPredicted RBP11.54□□□□□ -0.56
RFC1-208ENST00000504849 VASPP50552 380 aaPredicted RBP11.54□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 73.5 ms