RNA–Protein interactions for RNA: ENST00000504195.1

HMGB3P17-201, Transcript of high mobility group box 3 pseudogene 17, humanhuman

BASIC

Gene HMGB3P17, Length 649 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P17-201ENST00000504195 NPM1P06748 294 aaKnown RBP eCLIP10.27□□□□□ -0.77
HMGB3P17-201ENST00000504195 ASTLQ6HA08 431 aaPredicted RBP10.24□□□□□ -0.77
HMGB3P17-201ENST00000504195 ATMINO43313 823 aaPredicted RBP10.2□□□□□ -0.78
HMGB3P17-201ENST00000504195 MS4A3Q96HJ5 214 aa10.2□□□□□ -0.78
HMGB3P17-201ENST00000504195 LCE2DQ5TA82 110 aaPredicted RBP10.19□□□□□ -0.78
HMGB3P17-201ENST00000504195 POTEJP0CG39 1038 aa10.18□□□□□ -0.78
HMGB3P17-201ENST00000504195 CDAN1Q8IWY9 1227 aa10.1□□□□□ -0.79
HMGB3P17-201ENST00000504195 ATN1P54259 1190 aaPredicted RBP10.07□□□□□ -0.8
HMGB3P17-201ENST00000504195 MNX1P50219 401 aaPredicted RBP10.04□□□□□ -0.8
HMGB3P17-201ENST00000504195 TSPYL2Q9H2G4 693 aaPredicted RBP10.03□□□□□ -0.8
HMGB3P17-201ENST00000504195 SPDYE4A6NLX3 237 aa10.01□□□□□ -0.81
HMGB3P17-201ENST00000504195 SEC24BO95487 1268 aa10□□□□□ -0.81
HMGB3P17-201ENST00000504195 BMP2KQ9NSY1 1161 aaPredicted RBP9.97□□□□□ -0.81
HMGB3P17-201ENST00000504195 POTEFA5A3E0 1075 aa9.95□□□□□ -0.82
HMGB3P17-201ENST00000504195 CCDC61Q9Y6R9 512 aa9.94□□□□□ -0.82
HMGB3P17-201ENST00000504195 TIE1P35590 1138 aa9.93□□□□□ -0.82
HMGB3P17-201ENST00000504195 KIF12Q96FN5 646 aa9.92□□□□□ -0.82
HMGB3P17-201ENST00000504195 MMRN1Q13201 1228 aa9.89□□□□□ -0.83
HMGB3P17-201ENST00000504195 SLAIN1Q8ND83 568 aa9.89□□□□□ -0.83
HMGB3P17-201ENST00000504195 ST18O60284 1047 aa9.88□□□□□ -0.83
HMGB3P17-201ENST00000504195 TRPC6Q9Y210 931 aa9.88□□□□□ -0.83
HMGB3P17-201ENST00000504195 COLQQ9Y215 455 aaPredicted RBP9.87□□□□□ -0.83
HMGB3P17-201ENST00000504195 MAP3K13O43283 966 aa9.85□□□□□ -0.83
HMGB3P17-201ENST00000504195 TTLL13PA6NNM8 815 aa9.84□□□□□ -0.83
HMGB3P17-201ENST00000504195 IER5LQ5T953 404 aa9.84□□□□□ -0.83
HMGB3P17-201ENST00000504195 SPNS2Q8IVW8 549 aa9.84□□□□□ -0.83
HMGB3P17-201ENST00000504195 PLEKHG5O94827 1062 aa9.81□□□□□ -0.84
HMGB3P17-201ENST00000504195 TRIM35Q9UPQ4 493 aa9.81□□□□□ -0.84
HMGB3P17-201ENST00000504195 TMEM121BQ9BXQ6 578 aaPredicted RBP9.78□□□□□ -0.84
HMGB3P17-201ENST00000504195 PLCG2P16885 1265 aa9.75□□□□□ -0.85
HMGB3P17-201ENST00000504195 SNPHO15079 494 aa9.74□□□□□ -0.85
HMGB3P17-201ENST00000504195 PCDHB13Q9Y5F0 798 aa9.72□□□□□ -0.85
HMGB3P17-201ENST00000504195 RASEFQ8IZ41 740 aa9.7□□□□□ -0.86
HMGB3P17-201ENST00000504195 SGIP1Q9BQI5 828 aa9.7□□□□□ -0.86
HMGB3P17-201ENST00000504195 MARVELD3Q96A59 401 aa9.68□□□□□ -0.86
HMGB3P17-201ENST00000504195 MIER1Q8N108 512 aa9.65□□□□□ -0.86
HMGB3P17-201ENST00000504195 TMEM106CQ9BVX2 250 aa9.65□□□□□ -0.86
HMGB3P17-201ENST00000504195 EIF2AK3Q9NZJ5 1116 aaKnown RBP9.65□□□□□ -0.86
HMGB3P17-201ENST00000504195 CSRNP3Q8WYN3 585 aa9.64□□□□□ -0.87
HMGB3P17-201ENST00000504195 EMP3P54852 163 aa9.61□□□□□ -0.87
HMGB3P17-201ENST00000504195 IRX5P78411 483 aaPredicted RBP9.59□□□□□ -0.87
HMGB3P17-201ENST00000504195 IFNL1Q8IU54 200 aa9.59□□□□□ -0.87
HMGB3P17-201ENST00000504195 OCEL1Q9H607 264 aa9.57□□□□□ -0.88
HMGB3P17-201ENST00000504195 PROM2Q8N271 834 aa9.56□□□□□ -0.88
HMGB3P17-201ENST00000504195 PLCD3Q8N3E9 789 aa9.54□□□□□ -0.88
HMGB3P17-201ENST00000504195 ZBTB47Q9UFB7 747 aaPredicted RBP9.54□□□□□ -0.88
HMGB3P17-201ENST00000504195 C3orf67Q6ZVT6 689 aa9.53□□□□□ -0.88
HMGB3P17-201ENST00000504195 FAM212AQ96EL1 285 aa9.52□□□□□ -0.89
HMGB3P17-201ENST00000504195 HS3ST6Q96QI5 342 aa9.52□□□□□ -0.89
HMGB3P17-201ENST00000504195 FAM205CA6NFA0 338 aa9.51□□□□□ -0.89
HMGB3P17-201ENST00000504195 KRTAP3-3Q9BYR6 98 aa9.5□□□□□ -0.89
HMGB3P17-201ENST00000504195 KRTAP3-2Q9BYR7 98 aa9.5□□□□□ -0.89
HMGB3P17-201ENST00000504195 NUBP1P53384 320 aa9.44□□□□□ -0.9
HMGB3P17-201ENST00000504195 L3MBTL3Q96JM7 780 aaPredicted RBP9.41□□□□□ -0.9
HMGB3P17-201ENST00000504195 POTEB3A0JP26 581 aa9.4□□□□□ -0.9
HMGB3P17-201ENST00000504195 GOLGA2Q08379 1002 aa9.4□□□□□ -0.9
HMGB3P17-201ENST00000504195 POTEBQ6S5H4 581 aa9.4□□□□□ -0.9
HMGB3P17-201ENST00000504195 RNF166Q96A37 237 aaPredicted RBP9.4□□□□□ -0.9
HMGB3P17-201ENST00000504195 MKRN3Q13064 507 aaKnown RBP9.36□□□□□ -0.91
HMGB3P17-201ENST00000504195 PYGBP11216 843 aa9.35□□□□□ -0.91
HMGB3P17-201ENST00000504195 PDCD7Q8N8D1 485 aaKnown RBP9.34□□□□□ -0.91
HMGB3P17-201ENST00000504195 DCAF8Q5TAQ9 597 aa9.32□□□□□ -0.92
HMGB3P17-201ENST00000504195 PCDHB8Q9UN66 801 aa9.32□□□□□ -0.92
HMGB3P17-201ENST00000504195 ZNF710Q8N1W2 664 aa9.31□□□□□ -0.92
HMGB3P17-201ENST00000504195 EHMT2Q96KQ7 1210 aa9.3□□□□□ -0.92
HMGB3P17-201ENST00000504195 MYT1LQ9UL68 1186 aa9.3□□□□□ -0.92
HMGB3P17-201ENST00000504195 ERBB3P21860 1342 aa9.3□□□□□ -0.92
HMGB3P17-201ENST00000504195 G3V3G9 751 aa9.29□□□□□ -0.92
HMGB3P17-201ENST00000504195 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP9.28□□□□□ -0.92
HMGB3P17-201ENST00000504195 ZNF467Q7Z7K2 595 aaPredicted RBP9.24□□□□□ -0.93
HMGB3P17-201ENST00000504195 HOXB1P14653 301 aaPredicted RBP9.23□□□□□ -0.93
HMGB3P17-201ENST00000504195 DOK7Q18PE1 504 aa9.23□□□□□ -0.93
HMGB3P17-201ENST00000504195 RIMBP2O15034 1052 aa9.21□□□□□ -0.94
HMGB3P17-201ENST00000504195 HOXB3P14651 431 aaPredicted RBP9.2□□□□□ -0.94
HMGB3P17-201ENST00000504195 PTGER2P43116 358 aa9.2□□□□□ -0.94
HMGB3P17-201ENST00000504195 VARS2Q5ST30 1063 aaKnown RBP9.19□□□□□ -0.94
HMGB3P17-201ENST00000504195 BOLA1Q9Y3E2 137 aa9.16□□□□□ -0.94
HMGB3P17-201ENST00000504195 PSEN1P49768 467 aa9.14□□□□□ -0.95
HMGB3P17-201ENST00000504195 GSE1Q14687 1217 aa9.11□□□□□ -0.95
HMGB3P17-201ENST00000504195 DPY19L2Q6NUT2 758 aa9.11□□□□□ -0.95
HMGB3P17-201ENST00000504195 ZNF687Q8N1G0 1237 aa9.11□□□□□ -0.95
HMGB3P17-201ENST00000504195 ILDR1Q86SU0 546 aaPredicted RBP9.08□□□□□ -0.96
HMGB3P17-201ENST00000504195 ANKRD13DQ6ZTN6 518 aa9.06□□□□□ -0.96
HMGB3P17-201ENST00000504195 ZSWIM6Q9HCJ5 1215 aa9.06□□□□□ -0.96
HMGB3P17-201ENST00000504195 CABP2Q9NPB3 220 aa9.05□□□□□ -0.96
HMGB3P17-201ENST00000504195 PDAP1Q13442 181 aaKnown RBP9.04□□□□□ -0.96
HMGB3P17-201ENST00000504195 PLA2G2EQ9NZK7 142 aa9.03□□□□□ -0.96
HMGB3P17-201ENST00000504195 CHRM1P11229 460 aaPredicted RBP9.01□□□□□ -0.97
HMGB3P17-201ENST00000504195 KLHL34Q8N239 644 aa9□□□□□ -0.97
HMGB3P17-201ENST00000504195 LSM11P83369 360 aaKnown RBP eCLIP8.95□□□□□ -0.98
HMGB3P17-201ENST00000504195 GPR153Q6NV75 609 aa8.95□□□□□ -0.98
HMGB3P17-201ENST00000504195 FBXO3Q9UK99 471 aa8.95□□□□□ -0.98
HMGB3P17-201ENST00000504195 HCSTQ9UBK5 93 aa8.93□□□□□ -0.98
HMGB3P17-201ENST00000504195 ZNF316A6NFI3 1004 aaPredicted RBP8.89□□□□□ -0.99
HMGB3P17-201ENST00000504195 FKBP8Q14318 412 aa8.89□□□□□ -0.99
HMGB3P17-201ENST00000504195 ARSIQ5FYB1 569 aa8.89□□□□□ -0.99
HMGB3P17-201ENST00000504195 MICALL2Q8IY33 904 aa8.88□□□□□ -0.99
HMGB3P17-201ENST00000504195 PBX2P40425 430 aa8.86□□□□□ -0.99
HMGB3P17-201ENST00000504195 TMEM92Q6UXU6 159 aa8.86□□□□□ -0.99
HMGB3P17-201ENST00000504195 EFCAB3Q8N7B9 438 aa8.83□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 1140.2 ms