RNA–Protein interactions for RNA: ENST00000503360.1

HMGB1P35-201, Transcript of high mobility group box 1 pseudogene 35, humanhuman

BASIC

Gene HMGB1P35, Length 598 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P35-201ENST00000503360 MAMSTRQ6ZN01 415 aa9.26□□□□□ -0.93
HMGB1P35-201ENST00000503360 MS4A3Q96HJ5 214 aa9.26□□□□□ -0.93
HMGB1P35-201ENST00000503360 PCDH10Q9P2E7 1040 aa9.25□□□□□ -0.93
HMGB1P35-201ENST00000503360 METRNQ9UJH8 293 aa9.24□□□□□ -0.93
HMGB1P35-201ENST00000503360 CCDC61Q9Y6R9 512 aa9.23□□□□□ -0.93
HMGB1P35-201ENST00000503360 PLSCR2Q9NRY7 297 aa9.22□□□□□ -0.93
HMGB1P35-201ENST00000503360 POTEMA6NI47 508 aa9.2□□□□□ -0.94
HMGB1P35-201ENST00000503360 KIF12Q96FN5 646 aa9.18□□□□□ -0.94
HMGB1P35-201ENST00000503360 PLEKHG5O94827 1062 aa9.17□□□□□ -0.94
HMGB1P35-201ENST00000503360 POTEGQ6S5H5 508 aa9.16□□□□□ -0.94
HMGB1P35-201ENST00000503360 TIE1P35590 1138 aa9.15□□□□□ -0.94
HMGB1P35-201ENST00000503360 POTEJP0CG39 1038 aa9.14□□□□□ -0.95
HMGB1P35-201ENST00000503360 ATN1P54259 1190 aaPredicted RBP9.14□□□□□ -0.95
HMGB1P35-201ENST00000503360 TSPYL2Q9H2G4 693 aaPredicted RBP9.14□□□□□ -0.95
HMGB1P35-201ENST00000503360 SCUBE2Q9NQ36 999 aa9.13□□□□□ -0.95
HMGB1P35-201ENST00000503360 SGIP1Q9BQI5 828 aa9.12□□□□□ -0.95
HMGB1P35-201ENST00000503360 BMP2KQ9NSY1 1161 aaPredicted RBP9.1□□□□□ -0.95
HMGB1P35-201ENST00000503360 MAP3K13O43283 966 aa9.07□□□□□ -0.96
HMGB1P35-201ENST00000503360 IER5LQ5T953 404 aa9.07□□□□□ -0.96
HMGB1P35-201ENST00000503360 MIER1Q8N108 512 aa9.06□□□□□ -0.96
HMGB1P35-201ENST00000503360 ZBTB47Q9UFB7 747 aaPredicted RBP9.06□□□□□ -0.96
HMGB1P35-201ENST00000503360 POTEFA5A3E0 1075 aa9.05□□□□□ -0.96
HMGB1P35-201ENST00000503360 RASEFQ8IZ41 740 aa9.05□□□□□ -0.96
HMGB1P35-201ENST00000503360 LCE2DQ5TA82 110 aaPredicted RBP9.04□□□□□ -0.96
HMGB1P35-201ENST00000503360 TTLL13PA6NNM8 815 aa9.01□□□□□ -0.97
HMGB1P35-201ENST00000503360 TRPC6Q9Y210 931 aa9□□□□□ -0.97
HMGB1P35-201ENST00000503360 SEC24BO95487 1268 aa8.97□□□□□ -0.97
HMGB1P35-201ENST00000503360 NUBP1P53384 320 aa8.97□□□□□ -0.97
HMGB1P35-201ENST00000503360 PLCD3Q8N3E9 789 aa8.96□□□□□ -0.98
HMGB1P35-201ENST00000503360 FAM163AQ96GL9 167 aaPredicted RBP8.96□□□□□ -0.98
HMGB1P35-201ENST00000503360 COLQQ9Y215 455 aaPredicted RBP8.96□□□□□ -0.98
HMGB1P35-201ENST00000503360 PCDHB13Q9Y5F0 798 aa8.95□□□□□ -0.98
HMGB1P35-201ENST00000503360 TRIM35Q9UPQ4 493 aa8.94□□□□□ -0.98
HMGB1P35-201ENST00000503360 FAM212AQ96EL1 285 aa8.91□□□□□ -0.98
HMGB1P35-201ENST00000503360 IFNL1Q8IU54 200 aa8.88□□□□□ -0.99
HMGB1P35-201ENST00000503360 IRX5P78411 483 aaPredicted RBP8.85□□□□□ -0.99
HMGB1P35-201ENST00000503360 TMEM106CQ9BVX2 250 aa8.85□□□□□ -0.99
HMGB1P35-201ENST00000503360 PLCG2P16885 1265 aa8.84□□□□□ -0.99
HMGB1P35-201ENST00000503360 SLAIN1Q8ND83 568 aa8.83□□□□□ -1
HMGB1P35-201ENST00000503360 CDAN1Q8IWY9 1227 aa8.82□□□□□ -1
HMGB1P35-201ENST00000503360 TMEM121BQ9BXQ6 578 aaPredicted RBP8.82□□□□□ -1
HMGB1P35-201ENST00000503360 OCEL1Q9H607 264 aa8.82□□□□□ -1
HMGB1P35-201ENST00000503360 SNPHO15079 494 aa8.8□□□□□ -1
HMGB1P35-201ENST00000503360 ST18O60284 1047 aa8.8□□□□□ -1
HMGB1P35-201ENST00000503360 FBXO3Q9UK99 471 aa8.78□□□□□ -1
HMGB1P35-201ENST00000503360 DCAF8Q5TAQ9 597 aa8.74□□□□□ -1.01
HMGB1P35-201ENST00000503360 EIF2AK3Q9NZJ5 1116 aaKnown RBP8.73□□□□□ -1.01
HMGB1P35-201ENST00000503360 FKBP8Q14318 412 aa8.72□□□□□ -1.01
HMGB1P35-201ENST00000503360 ZNF467Q7Z7K2 595 aaPredicted RBP8.72□□□□□ -1.01
HMGB1P35-201ENST00000503360 CHRM1P11229 460 aaPredicted RBP8.71□□□□□ -1.02
HMGB1P35-201ENST00000503360 GSE1Q14687 1217 aa8.71□□□□□ -1.02
HMGB1P35-201ENST00000503360 PYGBP11216 843 aa8.7□□□□□ -1.02
HMGB1P35-201ENST00000503360 PDCD7Q8N8D1 485 aaKnown RBP8.67□□□□□ -1.02
HMGB1P35-201ENST00000503360 L3MBTL3Q96JM7 780 aaPredicted RBP8.67□□□□□ -1.02
HMGB1P35-201ENST00000503360 PCDHB8Q9UN66 801 aa8.66□□□□□ -1.02
HMGB1P35-201ENST00000503360 ILDR1Q86SU0 546 aaPredicted RBP8.65□□□□□ -1.02
HMGB1P35-201ENST00000503360 MMRN1Q13201 1228 aa8.63□□□□□ -1.03
HMGB1P35-201ENST00000503360 SPNS2Q8IVW8 549 aa8.63□□□□□ -1.03
HMGB1P35-201ENST00000503360 MKRN3Q13064 507 aaKnown RBP8.62□□□□□ -1.03
HMGB1P35-201ENST00000503360 C3orf67Q6ZVT6 689 aa8.62□□□□□ -1.03
HMGB1P35-201ENST00000503360 GOLGA2Q08379 1002 aa8.61□□□□□ -1.03
HMGB1P35-201ENST00000503360 VASPP50552 380 aaPredicted RBP8.59□□□□□ -1.03
HMGB1P35-201ENST00000503360 PSEN1P49768 467 aa8.57□□□□□ -1.04
HMGB1P35-201ENST00000503360 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP8.57□□□□□ -1.04
HMGB1P35-201ENST00000503360 KLHL34Q8N239 644 aa8.56□□□□□ -1.04
HMGB1P35-201ENST00000503360 PDAP1Q13442 181 aaKnown RBP8.55□□□□□ -1.04
HMGB1P35-201ENST00000503360 MARVELD3Q96A59 401 aa8.55□□□□□ -1.04
HMGB1P35-201ENST00000503360 EMP3P54852 163 aa8.54□□□□□ -1.04
HMGB1P35-201ENST00000503360 KRTAP3-3Q9BYR6 98 aa8.49□□□□□ -1.05
HMGB1P35-201ENST00000503360 KRTAP3-2Q9BYR7 98 aa8.49□□□□□ -1.05
HMGB1P35-201ENST00000503360 HS3ST6Q96QI5 342 aa8.48□□□□□ -1.05
HMGB1P35-201ENST00000503360 SPOCK2Q92563 424 aa8.47□□□□□ -1.05
HMGB1P35-201ENST00000503360 BOLA1Q9Y3E2 137 aa8.46□□□□□ -1.06
HMGB1P35-201ENST00000503360 POTEB3A0JP26 581 aa8.45□□□□□ -1.06
HMGB1P35-201ENST00000503360 G3V3G9 751 aa8.45□□□□□ -1.06
HMGB1P35-201ENST00000503360 HOXB3P14651 431 aaPredicted RBP8.45□□□□□ -1.06
HMGB1P35-201ENST00000503360 POTEBQ6S5H4 581 aa8.45□□□□□ -1.06
HMGB1P35-201ENST00000503360 TRIM41Q8WV44 630 aa8.45□□□□□ -1.06
HMGB1P35-201ENST00000503360 FAM205CA6NFA0 338 aa8.44□□□□□ -1.06
HMGB1P35-201ENST00000503360 HOXB1P14653 301 aaPredicted RBP8.44□□□□□ -1.06
HMGB1P35-201ENST00000503360 DOK7Q18PE1 504 aa8.43□□□□□ -1.06
HMGB1P35-201ENST00000503360 DPY19L2Q6NUT2 758 aa8.42□□□□□ -1.06
HMGB1P35-201ENST00000503360 CABP2Q9NPB3 220 aa8.42□□□□□ -1.06
HMGB1P35-201ENST00000503360 IFNLR1Q8IU57 520 aaPredicted RBP8.39□□□□□ -1.07
HMGB1P35-201ENST00000503360 ZSWIM6Q9HCJ5 1215 aa8.39□□□□□ -1.07
HMGB1P35-201ENST00000503360 RIMBP2O15034 1052 aa8.38□□□□□ -1.07
HMGB1P35-201ENST00000503360 ZNF710Q8N1W2 664 aa8.38□□□□□ -1.07
HMGB1P35-201ENST00000503360 CIZ1Q9ULV3 898 aaPredicted RBP8.37□□□□□ -1.07
HMGB1P35-201ENST00000503360 ERBB3P21860 1342 aa8.33□□□□□ -1.08
HMGB1P35-201ENST00000503360 SOX12O15370 315 aa8.32□□□□□ -1.08
HMGB1P35-201ENST00000503360 PTGER2P43116 358 aa8.31□□□□□ -1.08
HMGB1P35-201ENST00000503360 EFCAB3Q8N7B9 438 aa8.3□□□□□ -1.08
HMGB1P35-201ENST00000503360 MICALL2Q8IY33 904 aa8.29□□□□□ -1.08
HMGB1P35-201ENST00000503360 ZNF687Q8N1G0 1237 aa8.29□□□□□ -1.08
HMGB1P35-201ENST00000503360 RNF166Q96A37 237 aaPredicted RBP8.27□□□□□ -1.09
HMGB1P35-201ENST00000503360 GPR153Q6NV75 609 aa8.26□□□□□ -1.09
HMGB1P35-201ENST00000503360 VARS2Q5ST30 1063 aaKnown RBP8.25□□□□□ -1.09
HMGB1P35-201ENST00000503360 TMEM92Q6UXU6 159 aa8.25□□□□□ -1.09
HMGB1P35-201ENST00000503360 MYT1LQ9UL68 1186 aa8.24□□□□□ -1.09
HMGB1P35-201ENST00000503360 RIOK3O14730 519 aaKnown RBP8.23□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms