RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 CCDC61Q9Y6R9 512 aa10.54□□□□□ -0.72
USP54-217ENST00000498213 POTEB2H3BUK9 544 aa10.53□□□□□ -0.72
USP54-217ENST00000498213 ASTLQ6HA08 431 aaPredicted RBP10.53□□□□□ -0.72
USP54-217ENST00000498213 ATMINO43313 823 aaPredicted RBP10.51□□□□□ -0.73
USP54-217ENST00000498213 OTUD5Q96G74 571 aa10.51□□□□□ -0.73
USP54-217ENST00000498213 KIF12Q96FN5 646 aa10.5□□□□□ -0.73
USP54-217ENST00000498213 PLCD3Q8N3E9 789 aa10.49□□□□□ -0.73
USP54-217ENST00000498213 METRNQ9UJH8 293 aa10.49□□□□□ -0.73
USP54-217ENST00000498213 RASEFQ8IZ41 740 aa10.48□□□□□ -0.73
USP54-217ENST00000498213 SLC39A7Q92504 469 aa10.48□□□□□ -0.73
USP54-217ENST00000498213 C7P10643 843 aa10.47□□□□□ -0.73
USP54-217ENST00000498213 MAP3K13O43283 966 aa10.43□□□□□ -0.74
USP54-217ENST00000498213 ATN1P54259 1190 aaPredicted RBP10.43□□□□□ -0.74
USP54-217ENST00000498213 FBXO3Q9UK99 471 aa10.43□□□□□ -0.74
USP54-217ENST00000498213 ZBTB47Q9UFB7 747 aaPredicted RBP10.41□□□□□ -0.74
USP54-217ENST00000498213 BMP2KQ9NSY1 1161 aaPredicted RBP10.4□□□□□ -0.74
USP54-217ENST00000498213 TRPC6Q9Y210 931 aa10.4□□□□□ -0.74
USP54-217ENST00000498213 TIE1P35590 1138 aa10.37□□□□□ -0.75
USP54-217ENST00000498213 POTEMA6NI47 508 aa10.36□□□□□ -0.75
USP54-217ENST00000498213 POTEJP0CG39 1038 aa10.36□□□□□ -0.75
USP54-217ENST00000498213 MAMSTRQ6ZN01 415 aa10.36□□□□□ -0.75
USP54-217ENST00000498213 NUBP1P53384 320 aa10.35□□□□□ -0.75
USP54-217ENST00000498213 PCDHB13Q9Y5F0 798 aa10.33□□□□□ -0.76
USP54-217ENST00000498213 POTEGQ6S5H5 508 aa10.32□□□□□ -0.76
USP54-217ENST00000498213 SGIP1Q9BQI5 828 aa10.32□□□□□ -0.76
USP54-217ENST00000498213 TTLL13PA6NNM8 815 aa10.31□□□□□ -0.76
USP54-217ENST00000498213 FAM212AQ96EL1 285 aa10.3□□□□□ -0.76
USP54-217ENST00000498213 SCUBE2Q9NQ36 999 aa10.3□□□□□ -0.76
USP54-217ENST00000498213 POTEFA5A3E0 1075 aa10.29□□□□□ -0.76
USP54-217ENST00000498213 SEC24BO95487 1268 aa10.27□□□□□ -0.77
USP54-217ENST00000498213 IFNL1Q8IU54 200 aa10.25□□□□□ -0.77
USP54-217ENST00000498213 TRIM35Q9UPQ4 493 aa10.25□□□□□ -0.77
USP54-217ENST00000498213 VASPP50552 380 aaPredicted RBP10.24□□□□□ -0.77
USP54-217ENST00000498213 COLQQ9Y215 455 aaPredicted RBP10.24□□□□□ -0.77
USP54-217ENST00000498213 IER5LQ5T953 404 aa10.22□□□□□ -0.77
USP54-217ENST00000498213 DCAF8Q5TAQ9 597 aa10.22□□□□□ -0.77
USP54-217ENST00000498213 PCDH10Q9P2E7 1040 aa10.21□□□□□ -0.77
USP54-217ENST00000498213 TMEM106CQ9BVX2 250 aa10.2□□□□□ -0.78
USP54-217ENST00000498213 KLHL34Q8N239 644 aa10.19□□□□□ -0.78
USP54-217ENST00000498213 FAM163AQ96GL9 167 aaPredicted RBP10.19□□□□□ -0.78
USP54-217ENST00000498213 PYGBP11216 843 aa10.17□□□□□ -0.78
USP54-217ENST00000498213 LCE2DQ5TA82 110 aaPredicted RBP10.14□□□□□ -0.79
USP54-217ENST00000498213 PLCG2P16885 1265 aa10.12□□□□□ -0.79
USP54-217ENST00000498213 PCDHB8Q9UN66 801 aa10.11□□□□□ -0.79
USP54-217ENST00000498213 IRX5P78411 483 aaPredicted RBP10.08□□□□□ -0.8
USP54-217ENST00000498213 GSE1Q14687 1217 aa10.07□□□□□ -0.8
USP54-217ENST00000498213 SLAIN1Q8ND83 568 aa10.07□□□□□ -0.8
USP54-217ENST00000498213 OCEL1Q9H607 264 aa10.05□□□□□ -0.8
USP54-217ENST00000498213 IFNLR1Q8IU57 520 aaPredicted RBP10.03□□□□□ -0.8
USP54-217ENST00000498213 ZNF467Q7Z7K2 595 aaPredicted RBP10.02□□□□□ -0.81
USP54-217ENST00000498213 SPOCK2Q92563 424 aa10.02□□□□□ -0.81
USP54-217ENST00000498213 CHRM1P11229 460 aaPredicted RBP9.97□□□□□ -0.81
USP54-217ENST00000498213 GOLGA2Q08379 1002 aa9.97□□□□□ -0.81
USP54-217ENST00000498213 ST18O60284 1047 aa9.95□□□□□ -0.82
USP54-217ENST00000498213 MKRN3Q13064 507 aaKnown RBP9.95□□□□□ -0.82
USP54-217ENST00000498213 EIF2AK3Q9NZJ5 1116 aaKnown RBP9.95□□□□□ -0.82
USP54-217ENST00000498213 CIZ1Q9ULV3 898 aaPredicted RBP9.95□□□□□ -0.82
USP54-217ENST00000498213 PSEN1P49768 467 aa9.93□□□□□ -0.82
USP54-217ENST00000498213 CDAN1Q8IWY9 1227 aa9.92□□□□□ -0.82
USP54-217ENST00000498213 PDCD7Q8N8D1 485 aaKnown RBP9.91□□□□□ -0.82
USP54-217ENST00000498213 SNPHO15079 494 aa9.89□□□□□ -0.83
USP54-217ENST00000498213 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP9.89□□□□□ -0.83
USP54-217ENST00000498213 ABCC9O60706 1549 aa9.88□□□□□ -0.83
USP54-217ENST00000498213 PDAP1Q13442 181 aaKnown RBP9.88□□□□□ -0.83
USP54-217ENST00000498213 C3orf67Q6ZVT6 689 aa9.88□□□□□ -0.83
USP54-217ENST00000498213 L3MBTL3Q96JM7 780 aaPredicted RBP9.88□□□□□ -0.83
USP54-217ENST00000498213 TMEM121BQ9BXQ6 578 aaPredicted RBP9.85□□□□□ -0.83
USP54-217ENST00000498213 NISCHQ9Y2I1 1504 aa9.82□□□□□ -0.84
USP54-217ENST00000498213 CABP2Q9NPB3 220 aa9.82□□□□□ -0.84
USP54-217ENST00000498213 TRIM41Q8WV44 630 aa9.8□□□□□ -0.84
USP54-217ENST00000498213 DPY19L2Q6NUT2 758 aa9.79□□□□□ -0.84
USP54-217ENST00000498213 ILDR1Q86SU0 546 aaPredicted RBP9.79□□□□□ -0.84
USP54-217ENST00000498213 MARVELD3Q96A59 401 aa9.79□□□□□ -0.84
USP54-217ENST00000498213 G3V3G9 751 aa9.76□□□□□ -0.85
USP54-217ENST00000498213 BOLA1Q9Y3E2 137 aa9.74□□□□□ -0.85
USP54-217ENST00000498213 EMP3P54852 163 aa9.72□□□□□ -0.85
USP54-217ENST00000498213 ECM2O94769 699 aaPredicted RBP9.69□□□□□ -0.86
USP54-217ENST00000498213 EFCAB3Q8N7B9 438 aa9.69□□□□□ -0.86
USP54-217ENST00000498213 SPNS2Q8IVW8 549 aa9.68□□□□□ -0.86
USP54-217ENST00000498213 MMRN1Q13201 1228 aa9.66□□□□□ -0.86
USP54-217ENST00000498213 FAM205CA6NFA0 338 aa9.65□□□□□ -0.86
USP54-217ENST00000498213 RIOK3O14730 519 aaKnown RBP9.64□□□□□ -0.87
USP54-217ENST00000498213 HS3ST6Q96QI5 342 aa9.64□□□□□ -0.87
USP54-217ENST00000498213 TAOK2Q9UL54 1235 aa9.63□□□□□ -0.87
USP54-217ENST00000498213 POTEB3A0JP26 581 aa9.62□□□□□ -0.87
USP54-217ENST00000498213 HOXB3P14651 431 aaPredicted RBP9.62□□□□□ -0.87
USP54-217ENST00000498213 POTEBQ6S5H4 581 aa9.62□□□□□ -0.87
USP54-217ENST00000498213 PKD2Q13563 968 aa9.61□□□□□ -0.87
USP54-217ENST00000498213 ZNF710Q8N1W2 664 aa9.61□□□□□ -0.87
USP54-217ENST00000498213 RNF25Q96BH1 459 aaPredicted RBP9.6□□□□□ -0.87
USP54-217ENST00000498213 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP9.59□□□□□ -0.87
USP54-217ENST00000498213 VGFO15240 615 aaPredicted RBP9.59□□□□□ -0.87
USP54-217ENST00000498213 DOK7Q18PE1 504 aa9.59□□□□□ -0.87
USP54-217ENST00000498213 ZFP91Q96JP5 570 aaPredicted RBP9.59□□□□□ -0.87
USP54-217ENST00000498213 SOX12O15370 315 aa9.58□□□□□ -0.88
USP54-217ENST00000498213 MICALL2Q8IY33 904 aa9.58□□□□□ -0.88
USP54-217ENST00000498213 KRTAP3-3Q9BYR6 98 aa9.58□□□□□ -0.88
USP54-217ENST00000498213 KRTAP3-2Q9BYR7 98 aa9.58□□□□□ -0.88
USP54-217ENST00000498213 HOXB1P14653 301 aaPredicted RBP9.57□□□□□ -0.88
USP54-217ENST00000498213 DNAJC5Q9H3Z4 198 aa9.57□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 107.8 ms