RNA–Protein interactions for RNA: ENST00000497368.1

UBE3C-208, Transcript of ubiquitin protein ligase E3C, human

TSL 2

Gene UBE3C, Length 776 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBE3C-208	ENST00000497368	PIP4P2	Q8N4L2	257 aa		10.82	□□□□□ -0.68
UBE3C-208	ENST00000497368	ERCC6	Q03468	1493 aa		10.81	□□□□□ -0.68
UBE3C-208	ENST00000497368	FXR2	P51116	673 aa	Known RBP eCLIP	10.8	□□□□□ -0.68	1e-9	■■■□□ 14.6
UBE3C-208	ENST00000497368	PRR29	P0C7W0	189 aa		10.77	□□□□□ -0.69
UBE3C-208	ENST00000497368	STAG3	Q9UJ98	1225 aa		10.73	□□□□□ -0.69
UBE3C-208	ENST00000497368	TOP2A	P11388	1531 aa	Known RBP	10.72	□□□□□ -0.69
UBE3C-208	ENST00000497368	PRKAR2A	P13861	404 aa	Known RBP	10.71	□□□□□ -0.69
UBE3C-208	ENST00000497368	CHADL	Q6NUI6	762 aa		10.71	□□□□□ -0.69
UBE3C-208	ENST00000497368	RSF1	Q96T23	1441 aa	Predicted RBP	10.71	□□□□□ -0.69
UBE3C-208	ENST00000497368	PRDM2	Q13029	1718 aa		10.7	□□□□□ -0.7
UBE3C-208	ENST00000497368	WDR62	O43379	1518 aa		10.7	□□□□□ -0.7
UBE3C-208	ENST00000497368	DNAJC5	Q9H3Z4	198 aa		10.69	□□□□□ -0.7
UBE3C-208	ENST00000497368	CADPS	Q9ULU8	1353 aa		10.66	□□□□□ -0.7
UBE3C-208	ENST00000497368	MRC2	Q9UBG0	1479 aa		10.65	□□□□□ -0.7
UBE3C-208	ENST00000497368	PDS5B	Q9NTI5	1447 aa		10.64	□□□□□ -0.71
UBE3C-208	ENST00000497368	CFTR	P13569	1480 aa		10.63	□□□□□ -0.71
UBE3C-208	ENST00000497368	CREBZF	Q9NS37	354 aa		10.61	□□□□□ -0.71
UBE3C-208	ENST00000497368	CEP164	Q9UPV0	1460 aa		10.6	□□□□□ -0.71
UBE3C-208	ENST00000497368	URB2	Q14146	1524 aa	Known RBP	10.59	□□□□□ -0.71
UBE3C-208	ENST00000497368	FANCD2	Q9BXW9	1451 aa		10.59	□□□□□ -0.71
UBE3C-208	ENST00000497368	CCDC88B	A6NC98	1476 aa		10.55	□□□□□ -0.72
UBE3C-208	ENST00000497368	FARP1	Q9Y4F1	1045 aa	Predicted RBP	10.54	□□□□□ -0.72
UBE3C-208	ENST00000497368	HAX1	O00165	279 aa		10.52	□□□□□ -0.73
UBE3C-208	ENST00000497368	FBXO3	Q9UK99	471 aa		10.51	□□□□□ -0.73
UBE3C-208	ENST00000497368	MIER1	Q8N108	512 aa		10.5	□□□□□ -0.73
UBE3C-208	ENST00000497368	MNX1	P50219	401 aa	Predicted RBP	10.47	□□□□□ -0.73
UBE3C-208	ENST00000497368	EVX2	Q03828	476 aa		10.46	□□□□□ -0.73
UBE3C-208	ENST00000497368	PLCD3	Q8N3E9	789 aa		10.46	□□□□□ -0.73
UBE3C-208	ENST00000497368	TOPBP1	Q92547	1522 aa		10.44	□□□□□ -0.74
UBE3C-208	ENST00000497368	C19orf67	A6NJJ6	358 aa		10.44	□□□□□ -0.74
UBE3C-208	ENST00000497368	TARBP1	Q13395	1621 aa	Known RBP	10.44	□□□□□ -0.74
UBE3C-208	ENST00000497368	EIF4G3	O43432	1585 aa	Known RBP	10.43	□□□□□ -0.74
UBE3C-208	ENST00000497368	DNMBP	Q6XZF7	1577 aa		10.43	□□□□□ -0.74
UBE3C-208	ENST00000497368	ZNF608	Q9ULD9	1512 aa	Predicted RBP	10.43	□□□□□ -0.74
UBE3C-208	ENST00000497368	PLEKHG5	O94827	1062 aa		10.41	□□□□□ -0.74
UBE3C-208	ENST00000497368	VASP	P50552	380 aa	Predicted RBP	10.41	□□□□□ -0.74
UBE3C-208	ENST00000497368	CD44	P16070	742 aa	Known RBP	10.4	□□□□□ -0.74
UBE3C-208	ENST00000497368	NPM1	P06748	294 aa	Known RBP eCLIP	10.39	□□□□□ -0.75
UBE3C-208	ENST00000497368	WDR97	A6NE52	1622 aa		10.38	□□□□□ -0.75
UBE3C-208	ENST00000497368	CHD1	O14646	1710 aa		10.38	□□□□□ -0.75
UBE3C-208	ENST00000497368	IFT140	Q96RY7	1462 aa		10.36	□□□□□ -0.75
UBE3C-208	ENST00000497368	SP7	Q8TDD2	431 aa	Predicted RBP	10.35	□□□□□ -0.75
UBE3C-208	ENST00000497368	POLA1	P09884	1462 aa	Predicted RBP	10.35	□□□□□ -0.75
UBE3C-208	ENST00000497368	RIMBP3C	A6NJZ7	1639 aa		10.33	□□□□□ -0.76
UBE3C-208	ENST00000497368	RIMBP3B	A6NNM3	1639 aa		10.33	□□□□□ -0.76
UBE3C-208	ENST00000497368	RIMBP3	Q9UFD9	1639 aa		10.33	□□□□□ -0.76
UBE3C-208	ENST00000497368	CUX1	P39880	1505 aa		10.33	□□□□□ -0.76
UBE3C-208	ENST00000497368	ZBTB47	Q9UFB7	747 aa	Predicted RBP	10.31	□□□□□ -0.76
UBE3C-208	ENST00000497368	ZRANB1	Q9UGI0	708 aa		10.31	□□□□□ -0.76
UBE3C-208	ENST00000497368	ABCC8	Q09428	1581 aa		10.3	□□□□□ -0.76
UBE3C-208	ENST00000497368	KLHL34	Q8N239	644 aa		10.29	□□□□□ -0.76
UBE3C-208	ENST00000497368	RAD54L2	Q9Y4B4	1467 aa		10.29	□□□□□ -0.76
UBE3C-208	ENST00000497368	RASEF	Q8IZ41	740 aa		10.28	□□□□□ -0.76
UBE3C-208	ENST00000497368	FGD5	Q6ZNL6	1462 aa		10.28	□□□□□ -0.76
UBE3C-208	ENST00000497368	IFNLR1	Q8IU57	520 aa	Predicted RBP	10.27	□□□□□ -0.77
UBE3C-208	ENST00000497368	TSPYL2	Q9H2G4	693 aa	Predicted RBP	10.27	□□□□□ -0.77
UBE3C-208	ENST00000497368	PBRM1	Q86U86	1689 aa		10.27	□□□□□ -0.77
UBE3C-208	ENST00000497368	AQR	O60306	1485 aa	Known RBP eCLIP	10.26	□□□□□ -0.77
UBE3C-208	ENST00000497368	PAK3	O75914	559 aa	Predicted RBP	10.26	□□□□□ -0.77
UBE3C-208	ENST00000497368	NUBP1	P53384	320 aa		10.26	□□□□□ -0.77
UBE3C-208	ENST00000497368	ARHGEF11	O15085	1522 aa		10.25	□□□□□ -0.77
UBE3C-208	ENST00000497368	ABCA5	Q8WWZ7	1642 aa		10.25	□□□□□ -0.77
UBE3C-208	ENST00000497368	CLASP1	Q7Z460	1538 aa		10.23	□□□□□ -0.77
UBE3C-208	ENST00000497368	ZNF579	Q8NAF0	562 aa	Known RBP	10.23	□□□□□ -0.77
UBE3C-208	ENST00000497368	BIVM-ERCC5	R4GMW8	1640 aa		10.22	□□□□□ -0.77
UBE3C-208	ENST00000497368	PHF12	Q96QT6	1004 aa		10.22	□□□□□ -0.77
UBE3C-208	ENST00000497368	GABBR2	O75899	941 aa		10.21	□□□□□ -0.77
UBE3C-208	ENST00000497368	SNAPC4	Q5SXM2	1469 aa		10.21	□□□□□ -0.78
UBE3C-208	ENST00000497368	SYNJ1	O43426	1573 aa		10.2	□□□□□ -0.78
UBE3C-208	ENST00000497368	ARAP1	Q96P48	1450 aa		10.19	□□□□□ -0.78
UBE3C-208	ENST00000497368	CCDC61	Q9Y6R9	512 aa		10.18	□□□□□ -0.78
UBE3C-208	ENST00000497368	SOGA1	O94964	1423 aa		10.17	□□□□□ -0.78
UBE3C-208	ENST00000497368	TRIM41	Q8WV44	630 aa		10.17	□□□□□ -0.78
UBE3C-208	ENST00000497368	TOP2B	Q02880	1626 aa		10.17	□□□□□ -0.78
UBE3C-208	ENST00000497368	TDRD9	Q8NDG6	1382 aa	Known RBP	10.16	□□□□□ -0.78
UBE3C-208	ENST00000497368	FAM212A	Q96EL1	285 aa		10.16	□□□□□ -0.78
UBE3C-208	ENST00000497368	ABCA10	Q8WWZ4	1543 aa		10.16	□□□□□ -0.78
UBE3C-208	ENST00000497368	ADAMTS12	P58397	1594 aa		10.15	□□□□□ -0.78
UBE3C-208	ENST00000497368	SPOCK2	Q92563	424 aa		10.15	□□□□□ -0.78
UBE3C-208	ENST00000497368	MAGI1	Q96QZ7	1491 aa	Predicted RBP	10.15	□□□□□ -0.78
UBE3C-208	ENST00000497368	GRIN2B	Q13224	1484 aa		10.13	□□□□□ -0.79
UBE3C-208	ENST00000497368	DCAF8	Q5TAQ9	597 aa		10.13	□□□□□ -0.79
UBE3C-208	ENST00000497368	SYNJ2	O15056	1496 aa		10.11	□□□□□ -0.79
UBE3C-208	ENST00000497368	GALR2	O43603	387 aa	Predicted RBP	10.11	□□□□□ -0.79
UBE3C-208	ENST00000497368	CEP170	Q5SW79	1584 aa		10.1	□□□□□ -0.79
UBE3C-208	ENST00000497368	ERCC6L2	Q5T890	1561 aa		10.1	□□□□□ -0.79
UBE3C-208	ENST00000497368	GAPVD1	Q14C86	1478 aa		10.1	□□□□□ -0.79
UBE3C-208	ENST00000497368	KIF12	Q96FN5	646 aa		10.09	□□□□□ -0.79
UBE3C-208	ENST00000497368	SHROOM2	Q13796	1616 aa		10.08	□□□□□ -0.8
UBE3C-208	ENST00000497368	CLCN6	P51797	869 aa		10.08	□□□□□ -0.8
UBE3C-208	ENST00000497368	MS4A3	Q96HJ5	214 aa		10.08	□□□□□ -0.8
UBE3C-208	ENST00000497368	MAP3K13	O43283	966 aa		10.07	□□□□□ -0.8
UBE3C-208	ENST00000497368	SUPT5H	O00267	1087 aa	Known RBP	10.06	□□□□□ -0.8
UBE3C-208	ENST00000497368	PYGB	P11216	843 aa		10.06	□□□□□ -0.8
UBE3C-208	ENST00000497368	GSE1	Q14687	1217 aa		10.06	□□□□□ -0.8
UBE3C-208	ENST00000497368	CIZ1	Q9ULV3	898 aa	Predicted RBP	10.06	□□□□□ -0.8
UBE3C-208	ENST00000497368	WRN	Q14191	1432 aa	Predicted RBP eCLIP	10.05	□□□□□ -0.8
UBE3C-208	ENST00000497368	GRIN2A	Q12879	1464 aa		10.04	□□□□□ -0.8
UBE3C-208	ENST00000497368	NUP160	Q12769	1436 aa		10.03	□□□□□ -0.8
UBE3C-208	ENST00000497368	ERICH3	Q5RHP9	1530 aa		10.02	□□□□□ -0.8

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