RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 ZBTB47Q9UFB7 747 aaPredicted RBP15.3■□□□□ 0.04
VPS50-219ENST00000495039 RASEFQ8IZ41 740 aa15.29■□□□□ 0.04
VPS50-219ENST00000495039 ASTLQ6HA08 431 aaPredicted RBP15.28■□□□□ 0.04
VPS50-219ENST00000495039 KIF12Q96FN5 646 aa15.27■□□□□ 0.04
VPS50-219ENST00000495039 PELP1Q8IZL8 1130 aaKnown RBP15.26■□□□□ 0.03
VPS50-219ENST00000495039 ATMINO43313 823 aaPredicted RBP15.24■□□□□ 0.03
VPS50-219ENST00000495039 SLC39A7Q92504 469 aa15.2■□□□□ 0.02
VPS50-219ENST00000495039 METRNQ9UJH8 293 aa15.19■□□□□ 0.02
VPS50-219ENST00000495039 MAP3K13O43283 966 aa15.18■□□□□ 0.02
VPS50-219ENST00000495039 POTEB2H3BUK9 544 aa15.17■□□□□ 0.02
VPS50-219ENST00000495039 C7P10643 843 aa15.17■□□□□ 0.02
VPS50-219ENST00000495039 NUBP1P53384 320 aa15.15■□□□□ 0.02
VPS50-219ENST00000495039 FBXO3Q9UK99 471 aa15.15■□□□□ 0.02
VPS50-219ENST00000495039 OTUD5Q96G74 571 aa15.14■□□□□ 0.01
VPS50-219ENST00000495039 ATN1P54259 1190 aaPredicted RBP15.12■□□□□ 0.01
VPS50-219ENST00000495039 TIE1P35590 1138 aa15.1■□□□□ 0.01
VPS50-219ENST00000495039 FAM212AQ96EL1 285 aa15.1■□□□□ 0.01
VPS50-219ENST00000495039 BMP2KQ9NSY1 1161 aaPredicted RBP15.1■□□□□ 0.01
VPS50-219ENST00000495039 SGIP1Q9BQI5 828 aa15.08■□□□□ 0
VPS50-219ENST00000495039 TRPC6Q9Y210 931 aa15.08■□□□□ 0
VPS50-219ENST00000495039 PCDHB13Q9Y5F0 798 aa15.06■□□□□ 0
VPS50-219ENST00000495039 TTLL13PA6NNM8 815 aa14.99□□□□□ -0.01
VPS50-219ENST00000495039 MAMSTRQ6ZN01 415 aa14.99□□□□□ -0.01
VPS50-219ENST00000495039 POTEJP0CG39 1038 aa14.95□□□□□ -0.02
VPS50-219ENST00000495039 IFNL1Q8IU54 200 aa14.94□□□□□ -0.02
VPS50-219ENST00000495039 VASPP50552 380 aaPredicted RBP14.93□□□□□ -0.02
VPS50-219ENST00000495039 DCAF8Q5TAQ9 597 aa14.93□□□□□ -0.02
VPS50-219ENST00000495039 SCUBE2Q9NQ36 999 aa14.91□□□□□ -0.02
VPS50-219ENST00000495039 TRIM35Q9UPQ4 493 aa14.91□□□□□ -0.02
VPS50-219ENST00000495039 POTEFA5A3E0 1075 aa14.9□□□□□ -0.02
VPS50-219ENST00000495039 SEC24BO95487 1268 aa14.9□□□□□ -0.02
VPS50-219ENST00000495039 IER5LQ5T953 404 aa14.88□□□□□ -0.03
VPS50-219ENST00000495039 KLHL34Q8N239 644 aa14.88□□□□□ -0.03
VPS50-219ENST00000495039 TMEM106CQ9BVX2 250 aa14.86□□□□□ -0.03
VPS50-219ENST00000495039 PYGBP11216 843 aa14.85□□□□□ -0.03
VPS50-219ENST00000495039 COLQQ9Y215 455 aaPredicted RBP14.84□□□□□ -0.03
VPS50-219ENST00000495039 GSE1Q14687 1217 aa14.8□□□□□ -0.04
VPS50-219ENST00000495039 POTEMA6NI47 508 aa14.75□□□□□ -0.05
VPS50-219ENST00000495039 PCDHB8Q9UN66 801 aa14.73□□□□□ -0.05
VPS50-219ENST00000495039 PLCG2P16885 1265 aa14.72□□□□□ -0.05
VPS50-219ENST00000495039 POTEGQ6S5H5 508 aa14.71□□□□□ -0.05
VPS50-219ENST00000495039 ZNF467Q7Z7K2 595 aaPredicted RBP14.69□□□□□ -0.06
VPS50-219ENST00000495039 IRX5P78411 483 aaPredicted RBP14.67□□□□□ -0.06
VPS50-219ENST00000495039 CHRM1P11229 460 aaPredicted RBP14.66□□□□□ -0.06
VPS50-219ENST00000495039 SPOCK2Q92563 424 aa14.64□□□□□ -0.07
VPS50-219ENST00000495039 FAM163AQ96GL9 167 aaPredicted RBP14.64□□□□□ -0.07
VPS50-219ENST00000495039 PLSCR2Q9NRY7 297 aa14.64□□□□□ -0.07
VPS50-219ENST00000495039 IFNLR1Q8IU57 520 aaPredicted RBP14.62□□□□□ -0.07
VPS50-219ENST00000495039 OCEL1Q9H607 264 aa14.62□□□□□ -0.07
VPS50-219ENST00000495039 LCE2DQ5TA82 110 aaPredicted RBP14.6□□□□□ -0.07
VPS50-219ENST00000495039 SLAIN1Q8ND83 568 aa14.57□□□□□ -0.08
VPS50-219ENST00000495039 GOLGA2Q08379 1002 aa14.56□□□□□ -0.08
VPS50-219ENST00000495039 PCDH10Q9P2E7 1040 aa14.55□□□□□ -0.08
VPS50-219ENST00000495039 CIZ1Q9ULV3 898 aaPredicted RBP14.55□□□□□ -0.08
VPS50-219ENST00000495039 PSEN1P49768 467 aa14.52□□□□□ -0.09
VPS50-219ENST00000495039 MKRN3Q13064 507 aaKnown RBP14.52□□□□□ -0.09
VPS50-219ENST00000495039 PDAP1Q13442 181 aaKnown RBP14.48□□□□□ -0.09
VPS50-219ENST00000495039 PDCD7Q8N8D1 485 aaKnown RBP14.45□□□□□ -0.1
VPS50-219ENST00000495039 EIF2AK3Q9NZJ5 1116 aaKnown RBP14.45□□□□□ -0.1
VPS50-219ENST00000495039 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.42□□□□□ -0.13e-10■■■■■ 39.1
VPS50-219ENST00000495039 L3MBTL3Q96JM7 780 aaPredicted RBP14.4□□□□□ -0.1
VPS50-219ENST00000495039 TRIM41Q8WV44 630 aa14.39□□□□□ -0.11
VPS50-219ENST00000495039 ST18O60284 1047 aa14.38□□□□□ -0.11
VPS50-219ENST00000495039 C3orf67Q6ZVT6 689 aa14.37□□□□□ -0.11
VPS50-219ENST00000495039 SNPHO15079 494 aa14.35□□□□□ -0.11
VPS50-219ENST00000495039 CABP2Q9NPB3 220 aa14.35□□□□□ -0.11
VPS50-219ENST00000495039 ILDR1Q86SU0 546 aaPredicted RBP14.32□□□□□ -0.12
VPS50-219ENST00000495039 CDAN1Q8IWY9 1227 aa14.28□□□□□ -0.12
VPS50-219ENST00000495039 TMEM121BQ9BXQ6 578 aaPredicted RBP14.28□□□□□ -0.12
VPS50-219ENST00000495039 G3V3G9 751 aa14.24□□□□□ -0.13
VPS50-219ENST00000495039 DPY19L2Q6NUT2 758 aa14.23□□□□□ -0.13
VPS50-219ENST00000495039 BOLA1Q9Y3E2 137 aa14.21□□□□□ -0.13
VPS50-219ENST00000495039 RIOK3O14730 519 aaKnown RBP14.17□□□□□ -0.14
VPS50-219ENST00000495039 EFCAB3Q8N7B9 438 aa14.16□□□□□ -0.14
VPS50-219ENST00000495039 MARVELD3Q96A59 401 aa14.14□□□□□ -0.15
VPS50-219ENST00000495039 RNF25Q96BH1 459 aaPredicted RBP14.13□□□□□ -0.15
VPS50-219ENST00000495039 VGFO15240 615 aaPredicted RBP14.11□□□□□ -0.15
VPS50-219ENST00000495039 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP14.09□□□□□ -0.15
VPS50-219ENST00000495039 ZFP91Q96JP5 570 aaPredicted RBP14.09□□□□□ -0.15
VPS50-219ENST00000495039 EMP3P54852 163 aa14.07□□□□□ -0.16
VPS50-219ENST00000495039 SOX12O15370 315 aa14.06□□□□□ -0.16
VPS50-219ENST00000495039 TAOK2Q9UL54 1235 aa14.02□□□□□ -0.17
VPS50-219ENST00000495039 MICALL2Q8IY33 904 aa13.99□□□□□ -0.17
VPS50-219ENST00000495039 HOXB3P14651 431 aaPredicted RBP13.98□□□□□ -0.17
VPS50-219ENST00000495039 PHF8Q9UPP1 1060 aa13.97□□□□□ -0.17
VPS50-219ENST00000495039 DOK7Q18PE1 504 aa13.96□□□□□ -0.17
VPS50-219ENST00000495039 ZNF710Q8N1W2 664 aa13.96□□□□□ -0.17
VPS50-219ENST00000495039 MS4A4AQ96JQ5 239 aa13.96□□□□□ -0.17
VPS50-219ENST00000495039 HS3ST6Q96QI5 342 aa13.96□□□□□ -0.17
VPS50-219ENST00000495039 FAM205CA6NFA0 338 aa13.95□□□□□ -0.18
VPS50-219ENST00000495039 BCL11BQ9C0K0 894 aaPredicted RBP13.93□□□□□ -0.18
VPS50-219ENST00000495039 SPNS2Q8IVW8 549 aa13.92□□□□□ -0.18
VPS50-219ENST00000495039 RIMBP2O15034 1052 aa13.9□□□□□ -0.18
VPS50-219ENST00000495039 ECM2O94769 699 aaPredicted RBP13.9□□□□□ -0.18
VPS50-219ENST00000495039 HOXB1P14653 301 aaPredicted RBP13.9□□□□□ -0.18
VPS50-219ENST00000495039 NLRP6P59044 892 aa13.9□□□□□ -0.18
VPS50-219ENST00000495039 POTEB3A0JP26 581 aa13.89□□□□□ -0.19
VPS50-219ENST00000495039 POTEBQ6S5H4 581 aa13.89□□□□□ -0.19
VPS50-219ENST00000495039 STK24Q9Y6E0 443 aa13.89□□□□□ -0.19
VPS50-219ENST00000495039 MMRN1Q13201 1228 aa13.88□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms