RNA–Protein interactions for RNA: ENST00000494612.1

SMC4-224, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 3

Gene SMC4, Length 622 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-224ENST00000494612 SLC39A7Q92504 469 aa14.69□□□□□ -0.06
SMC4-224ENST00000494612 C7P10643 843 aa14.68□□□□□ -0.06
SMC4-224ENST00000494612 POTEMA6NI47 508 aa14.67□□□□□ -0.06
SMC4-224ENST00000494612 TSPYL2Q9H2G4 693 aaPredicted RBP14.67□□□□□ -0.06
SMC4-224ENST00000494612 ATMINO43313 823 aaPredicted RBP14.66□□□□□ -0.06
SMC4-224ENST00000494612 POTEGQ6S5H5 508 aa14.61□□□□□ -0.07
SMC4-224ENST00000494612 MAMSTRQ6ZN01 415 aa14.61□□□□□ -0.07
SMC4-224ENST00000494612 PLEKHG5O94827 1062 aa14.57□□□□□ -0.08
SMC4-224ENST00000494612 CCDC61Q9Y6R9 512 aa14.56□□□□□ -0.08
SMC4-224ENST00000494612 ATN1P54259 1190 aaPredicted RBP14.52□□□□□ -0.09
SMC4-224ENST00000494612 SCUBE2Q9NQ36 999 aa14.52□□□□□ -0.09
SMC4-224ENST00000494612 POTEJP0CG39 1038 aa14.51□□□□□ -0.09
SMC4-224ENST00000494612 KIF12Q96FN5 646 aa14.51□□□□□ -0.09
SMC4-224ENST00000494612 PCDH10Q9P2E7 1040 aa14.49□□□□□ -0.09
SMC4-224ENST00000494612 MIER1Q8N108 512 aa14.47□□□□□ -0.09
SMC4-224ENST00000494612 BMP2KQ9NSY1 1161 aaPredicted RBP14.44□□□□□ -0.1
SMC4-224ENST00000494612 MAP3K13O43283 966 aa14.41□□□□□ -0.1
SMC4-224ENST00000494612 FAM163AQ96GL9 167 aaPredicted RBP14.41□□□□□ -0.1
SMC4-224ENST00000494612 TIE1P35590 1138 aa14.4□□□□□ -0.1
SMC4-224ENST00000494612 RASEFQ8IZ41 740 aa14.37□□□□□ -0.11
SMC4-224ENST00000494612 TRPC6Q9Y210 931 aa14.37□□□□□ -0.11
SMC4-224ENST00000494612 SEC24BO95487 1268 aa14.35□□□□□ -0.11
SMC4-224ENST00000494612 POTEFA5A3E0 1075 aa14.32□□□□□ -0.12
SMC4-224ENST00000494612 FKBP8Q14318 412 aa14.32□□□□□ -0.12
SMC4-224ENST00000494612 PLCD3Q8N3E9 789 aa14.32□□□□□ -0.12
SMC4-224ENST00000494612 TTLL13PA6NNM8 815 aa14.3□□□□□ -0.12
SMC4-224ENST00000494612 LCE2DQ5TA82 110 aaPredicted RBP14.29□□□□□ -0.12
SMC4-224ENST00000494612 ZBTB47Q9UFB7 747 aaPredicted RBP14.27□□□□□ -0.13
SMC4-224ENST00000494612 SGIP1Q9BQI5 828 aa14.26□□□□□ -0.13
SMC4-224ENST00000494612 PCDHB13Q9Y5F0 798 aa14.25□□□□□ -0.13
SMC4-224ENST00000494612 COLQQ9Y215 455 aaPredicted RBP14.24□□□□□ -0.13
SMC4-224ENST00000494612 IER5LQ5T953 404 aa14.23□□□□□ -0.13
SMC4-224ENST00000494612 TRIM35Q9UPQ4 493 aa14.23□□□□□ -0.13
SMC4-224ENST00000494612 NUBP1P53384 320 aa14.14□□□□□ -0.15
SMC4-224ENST00000494612 FAM212AQ96EL1 285 aa14.14□□□□□ -0.15
SMC4-224ENST00000494612 IFNL1Q8IU54 200 aa14.12□□□□□ -0.15
SMC4-224ENST00000494612 TMEM106CQ9BVX2 250 aa14.11□□□□□ -0.15
SMC4-224ENST00000494612 SLAIN1Q8ND83 568 aa14.1□□□□□ -0.15
SMC4-224ENST00000494612 PLCG2P16885 1265 aa14.09□□□□□ -0.15
SMC4-224ENST00000494612 CDAN1Q8IWY9 1227 aa14.08□□□□□ -0.16
SMC4-224ENST00000494612 FBXO3Q9UK99 471 aa14.01□□□□□ -0.17
SMC4-224ENST00000494612 ST18O60284 1047 aa14□□□□□ -0.17
SMC4-224ENST00000494612 IRX5P78411 483 aaPredicted RBP13.97□□□□□ -0.17
SMC4-224ENST00000494612 DCAF8Q5TAQ9 597 aa13.96□□□□□ -0.17
SMC4-224ENST00000494612 OCEL1Q9H607 264 aa13.94□□□□□ -0.18
SMC4-224ENST00000494612 PYGBP11216 843 aa13.92□□□□□ -0.18
SMC4-224ENST00000494612 SNPHO15079 494 aa13.89□□□□□ -0.19
SMC4-224ENST00000494612 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.88□□□□□ -0.19
SMC4-224ENST00000494612 TMEM121BQ9BXQ6 578 aaPredicted RBP13.87□□□□□ -0.19
SMC4-224ENST00000494612 VASPP50552 380 aaPredicted RBP13.86□□□□□ -0.19
SMC4-224ENST00000494612 PCDHB8Q9UN66 801 aa13.84□□□□□ -0.19
SMC4-224ENST00000494612 GOLGA2Q08379 1002 aa13.78□□□□□ -0.2
SMC4-224ENST00000494612 C3orf67Q6ZVT6 689 aa13.75□□□□□ -0.21
SMC4-224ENST00000494612 MKRN3Q13064 507 aaKnown RBP13.74□□□□□ -0.21
SMC4-224ENST00000494612 GSE1Q14687 1217 aa13.74□□□□□ -0.21
SMC4-224ENST00000494612 ZNF467Q7Z7K2 595 aaPredicted RBP13.74□□□□□ -0.21
SMC4-224ENST00000494612 KLHL34Q8N239 644 aa13.74□□□□□ -0.21
SMC4-224ENST00000494612 MMRN1Q13201 1228 aa13.73□□□□□ -0.21
SMC4-224ENST00000494612 MARVELD3Q96A59 401 aa13.73□□□□□ -0.21
SMC4-224ENST00000494612 SPNS2Q8IVW8 549 aa13.72□□□□□ -0.21
SMC4-224ENST00000494612 L3MBTL3Q96JM7 780 aaPredicted RBP13.71□□□□□ -0.21
SMC4-224ENST00000494612 PDCD7Q8N8D1 485 aaKnown RBP13.68□□□□□ -0.22
SMC4-224ENST00000494612 IFNLR1Q8IU57 520 aaPredicted RBP13.66□□□□□ -0.22
SMC4-224ENST00000494612 EMP3P54852 163 aa13.64□□□□□ -0.23
SMC4-224ENST00000494612 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.64□□□□□ -0.231e-7■■■■■ 29.6
SMC4-224ENST00000494612 CHRM1P11229 460 aaPredicted RBP13.61□□□□□ -0.23
SMC4-224ENST00000494612 PSEN1P49768 467 aa13.6□□□□□ -0.23
SMC4-224ENST00000494612 SPOCK2Q92563 424 aa13.56□□□□□ -0.24
SMC4-224ENST00000494612 G3V3G9 751 aa13.54□□□□□ -0.24
SMC4-224ENST00000494612 FAM205CA6NFA0 338 aa13.53□□□□□ -0.24
SMC4-224ENST00000494612 HS3ST6Q96QI5 342 aa13.52□□□□□ -0.25
SMC4-224ENST00000494612 PDAP1Q13442 181 aaKnown RBP13.51□□□□□ -0.25
SMC4-224ENST00000494612 ILDR1Q86SU0 546 aaPredicted RBP13.45□□□□□ -0.26
SMC4-224ENST00000494612 KRTAP3-3Q9BYR6 98 aa13.45□□□□□ -0.26
SMC4-224ENST00000494612 KRTAP3-2Q9BYR7 98 aa13.45□□□□□ -0.26
SMC4-224ENST00000494612 CABP2Q9NPB3 220 aa13.45□□□□□ -0.26
SMC4-224ENST00000494612 POTEB3A0JP26 581 aa13.44□□□□□ -0.26
SMC4-224ENST00000494612 DPY19L2Q6NUT2 758 aa13.44□□□□□ -0.26
SMC4-224ENST00000494612 POTEBQ6S5H4 581 aa13.44□□□□□ -0.26
SMC4-224ENST00000494612 BOLA1Q9Y3E2 137 aa13.44□□□□□ -0.26
SMC4-224ENST00000494612 CIZ1Q9ULV3 898 aaPredicted RBP13.43□□□□□ -0.26
SMC4-224ENST00000494612 ZNF710Q8N1W2 664 aa13.41□□□□□ -0.26
SMC4-224ENST00000494612 HOXB3P14651 431 aaPredicted RBP13.35□□□□□ -0.27
SMC4-224ENST00000494612 DOK7Q18PE1 504 aa13.35□□□□□ -0.27
SMC4-224ENST00000494612 ERBB3P21860 1342 aa13.33□□□□□ -0.28
SMC4-224ENST00000494612 HOXB1P14653 301 aaPredicted RBP13.32□□□□□ -0.28
SMC4-224ENST00000494612 RIMBP2O15034 1052 aa13.31□□□□□ -0.28
SMC4-224ENST00000494612 TRIM41Q8WV44 630 aa13.29□□□□□ -0.28
SMC4-224ENST00000494612 EFCAB3Q8N7B9 438 aa13.23□□□□□ -0.29
SMC4-224ENST00000494612 VARS2Q5ST30 1063 aaKnown RBP13.2□□□□□ -0.3
SMC4-224ENST00000494612 RNF166Q96A37 237 aaPredicted RBP13.19□□□□□ -0.3
SMC4-224ENST00000494612 RNF25Q96BH1 459 aaPredicted RBP13.16□□□□□ -0.3
SMC4-224ENST00000494612 ZSWIM6Q9HCJ5 1215 aa13.16□□□□□ -0.3
SMC4-224ENST00000494612 MICALL2Q8IY33 904 aa13.14□□□□□ -0.31
SMC4-224ENST00000494612 MYT1LQ9UL68 1186 aa13.13□□□□□ -0.31
SMC4-224ENST00000494612 RIOK3O14730 519 aaKnown RBP13.12□□□□□ -0.31
SMC4-224ENST00000494612 ZNF687Q8N1G0 1237 aa13.11□□□□□ -0.31
SMC4-224ENST00000494612 SOX12O15370 315 aa13.1□□□□□ -0.31
SMC4-224ENST00000494612 TMEM92Q6UXU6 159 aa13.08□□□□□ -0.32
SMC4-224ENST00000494612 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms