RNA–Protein interactions for RNA: ENST00000493695.1

SMC4-223, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-223ENST00000493695 RASEFQ8IZ41 740 aa15.29■□□□□ 0.04
SMC4-223ENST00000493695 CCDC61Q9Y6R9 512 aa15.27■□□□□ 0.04
SMC4-223ENST00000493695 FBXO3Q9UK99 471 aa15.26■□□□□ 0.03
SMC4-223ENST00000493695 KIF12Q96FN5 646 aa15.18■□□□□ 0.02
SMC4-223ENST00000493695 MAP3K13O43283 966 aa15.16■□□□□ 0.02
SMC4-223ENST00000493695 PELP1Q8IZL8 1130 aaKnown RBP15.14■□□□□ 0.01
SMC4-223ENST00000493695 FAM212AQ96EL1 285 aa15.14■□□□□ 0.01
SMC4-223ENST00000493695 NUBP1P53384 320 aa15.12■□□□□ 0.01
SMC4-223ENST00000493695 KLHL34Q8N239 644 aa15.12■□□□□ 0.01
SMC4-223ENST00000493695 ATMINO43313 823 aaPredicted RBP15.11■□□□□ 0.01
SMC4-223ENST00000493695 ASTLQ6HA08 431 aaPredicted RBP15.1■□□□□ 0.01
SMC4-223ENST00000493695 DCAF8Q5TAQ9 597 aa15.08■□□□□ 0
SMC4-223ENST00000493695 METRNQ9UJH8 293 aa15.08■□□□□ 0
SMC4-223ENST00000493695 PCDHB13Q9Y5F0 798 aa15.07■□□□□ 0
SMC4-223ENST00000493695 SLC39A7Q92504 469 aa15.06■□□□□ 0
SMC4-223ENST00000493695 TRPC6Q9Y210 931 aa15.05■□□□□ -0
SMC4-223ENST00000493695 VASPP50552 380 aaPredicted RBP15.04■□□□□ -0
SMC4-223ENST00000493695 ATN1P54259 1190 aaPredicted RBP15.04■□□□□ -0
SMC4-223ENST00000493695 C7P10643 843 aa15.02■□□□□ -0
SMC4-223ENST00000493695 BMP2KQ9NSY1 1161 aaPredicted RBP15.01□□□□□ -0.01
SMC4-223ENST00000493695 POTEB2H3BUK9 544 aa14.99□□□□□ -0.01
SMC4-223ENST00000493695 TIE1P35590 1138 aa14.97□□□□□ -0.01
SMC4-223ENST00000493695 PYGBP11216 843 aa14.95□□□□□ -0.02
SMC4-223ENST00000493695 SGIP1Q9BQI5 828 aa14.94□□□□□ -0.02
SMC4-223ENST00000493695 IFNL1Q8IU54 200 aa14.93□□□□□ -0.02
SMC4-223ENST00000493695 OTUD5Q96G74 571 aa14.93□□□□□ -0.02
SMC4-223ENST00000493695 TTLL13PA6NNM8 815 aa14.92□□□□□ -0.02
SMC4-223ENST00000493695 SEC24BO95487 1268 aa14.9□□□□□ -0.02
SMC4-223ENST00000493695 TRIM35Q9UPQ4 493 aa14.87□□□□□ -0.03
SMC4-223ENST00000493695 TMEM106CQ9BVX2 250 aa14.86□□□□□ -0.03
SMC4-223ENST00000493695 GSE1Q14687 1217 aa14.84□□□□□ -0.03
SMC4-223ENST00000493695 MAMSTRQ6ZN01 415 aa14.82□□□□□ -0.04
SMC4-223ENST00000493695 PCDHB8Q9UN66 801 aa14.81□□□□□ -0.04
SMC4-223ENST00000493695 SCUBE2Q9NQ36 999 aa14.79□□□□□ -0.04
SMC4-223ENST00000493695 POTEJP0CG39 1038 aa14.77□□□□□ -0.05
SMC4-223ENST00000493695 CIZ1Q9ULV3 898 aaPredicted RBP14.77□□□□□ -0.05
SMC4-223ENST00000493695 COLQQ9Y215 455 aaPredicted RBP14.76□□□□□ -0.05
SMC4-223ENST00000493695 POTEFA5A3E0 1075 aa14.75□□□□□ -0.05
SMC4-223ENST00000493695 IFNLR1Q8IU57 520 aaPredicted RBP14.75□□□□□ -0.05
SMC4-223ENST00000493695 SPOCK2Q92563 424 aa14.75□□□□□ -0.05
SMC4-223ENST00000493695 IER5LQ5T953 404 aa14.72□□□□□ -0.05
SMC4-223ENST00000493695 PLCG2P16885 1265 aa14.69□□□□□ -0.06
SMC4-223ENST00000493695 ZNF467Q7Z7K2 595 aaPredicted RBP14.68□□□□□ -0.06
SMC4-223ENST00000493695 GOLGA2Q08379 1002 aa14.66□□□□□ -0.06
SMC4-223ENST00000493695 CHRM1P11229 460 aaPredicted RBP14.59□□□□□ -0.07
SMC4-223ENST00000493695 FAM163AQ96GL9 167 aaPredicted RBP14.59□□□□□ -0.07
SMC4-223ENST00000493695 PSEN1P49768 467 aa14.56□□□□□ -0.08
SMC4-223ENST00000493695 MKRN3Q13064 507 aaKnown RBP14.56□□□□□ -0.08
SMC4-223ENST00000493695 OCEL1Q9H607 264 aa14.56□□□□□ -0.08
SMC4-223ENST00000493695 IRX5P78411 483 aaPredicted RBP14.55□□□□□ -0.08
SMC4-223ENST00000493695 POTEMA6NI47 508 aa14.54□□□□□ -0.08
SMC4-223ENST00000493695 SLAIN1Q8ND83 568 aa14.52□□□□□ -0.09
SMC4-223ENST00000493695 POTEGQ6S5H5 508 aa14.51□□□□□ -0.09
SMC4-223ENST00000493695 PDAP1Q13442 181 aaKnown RBP14.49□□□□□ -0.09
SMC4-223ENST00000493695 PLSCR2Q9NRY7 297 aa14.49□□□□□ -0.09
SMC4-223ENST00000493695 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.45□□□□□ -0.11e-6■■■■□ 20.1
SMC4-223ENST00000493695 CABP2Q9NPB3 220 aa14.43□□□□□ -0.1
SMC4-223ENST00000493695 EIF2AK3Q9NZJ5 1116 aaKnown RBP14.41□□□□□ -0.1
SMC4-223ENST00000493695 TRIM41Q8WV44 630 aa14.4□□□□□ -0.1
SMC4-223ENST00000493695 C3orf67Q6ZVT6 689 aa14.37□□□□□ -0.11
SMC4-223ENST00000493695 PDCD7Q8N8D1 485 aaKnown RBP14.35□□□□□ -0.11
SMC4-223ENST00000493695 L3MBTL3Q96JM7 780 aaPredicted RBP14.35□□□□□ -0.11
SMC4-223ENST00000493695 G3V3G9 751 aa14.33□□□□□ -0.12
SMC4-223ENST00000493695 LCE2DQ5TA82 110 aaPredicted RBP14.33□□□□□ -0.12
SMC4-223ENST00000493695 RIOK3O14730 519 aaKnown RBP14.26□□□□□ -0.13
SMC4-223ENST00000493695 DPY19L2Q6NUT2 758 aa14.26□□□□□ -0.13
SMC4-223ENST00000493695 ST18O60284 1047 aa14.25□□□□□ -0.13
SMC4-223ENST00000493695 SNPHO15079 494 aa14.24□□□□□ -0.13
SMC4-223ENST00000493695 EFCAB3Q8N7B9 438 aa14.23□□□□□ -0.13
SMC4-223ENST00000493695 PCDH10Q9P2E7 1040 aa14.22□□□□□ -0.13
SMC4-223ENST00000493695 BOLA1Q9Y3E2 137 aa14.19□□□□□ -0.14
SMC4-223ENST00000493695 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP14.18□□□□□ -0.14
SMC4-223ENST00000493695 RNF25Q96BH1 459 aaPredicted RBP14.18□□□□□ -0.14
SMC4-223ENST00000493695 ZFP91Q96JP5 570 aaPredicted RBP14.18□□□□□ -0.14
SMC4-223ENST00000493695 VGFO15240 615 aaPredicted RBP14.17□□□□□ -0.14
SMC4-223ENST00000493695 ILDR1Q86SU0 546 aaPredicted RBP14.14□□□□□ -0.15
SMC4-223ENST00000493695 ECM2O94769 699 aaPredicted RBP14.12□□□□□ -0.15
SMC4-223ENST00000493695 CDAN1Q8IWY9 1227 aa14.12□□□□□ -0.15
SMC4-223ENST00000493695 MARVELD3Q96A59 401 aa14.11□□□□□ -0.15
SMC4-223ENST00000493695 TAOK2Q9UL54 1235 aa14.11□□□□□ -0.15
SMC4-223ENST00000493695 TMEM121BQ9BXQ6 578 aaPredicted RBP14.08□□□□□ -0.16
SMC4-223ENST00000493695 SOX12O15370 315 aa14.06□□□□□ -0.16
SMC4-223ENST00000493695 STK24Q9Y6E0 443 aa14.06□□□□□ -0.16
SMC4-223ENST00000493695 BCL11BQ9C0K0 894 aaPredicted RBP14.05□□□□□ -0.16
SMC4-223ENST00000493695 PHF8Q9UPP1 1060 aa14.04□□□□□ -0.16
SMC4-223ENST00000493695 STK25O00506 426 aa14.02□□□□□ -0.17
SMC4-223ENST00000493695 EMP3P54852 163 aa14.02□□□□□ -0.17
SMC4-223ENST00000493695 MICALL2Q8IY33 904 aa13.98□□□□□ -0.17
SMC4-223ENST00000493695 ZNF710Q8N1W2 664 aa13.98□□□□□ -0.17
SMC4-223ENST00000493695 NLRP6P59044 892 aa13.95□□□□□ -0.18
SMC4-223ENST00000493695 PKD2Q13563 968 aa13.94□□□□□ -0.18
SMC4-223ENST00000493695 MS4A4AQ96JQ5 239 aa13.94□□□□□ -0.18
SMC4-223ENST00000493695 RGL2O15211 777 aa13.93□□□□□ -0.18
SMC4-223ENST00000493695 FAM205CA6NFA0 338 aa13.92□□□□□ -0.18
SMC4-223ENST00000493695 DOK7Q18PE1 504 aa13.91□□□□□ -0.18
SMC4-223ENST00000493695 RIMBP2O15034 1052 aa13.88□□□□□ -0.19
SMC4-223ENST00000493695 HOXB3P14651 431 aaPredicted RBP13.87□□□□□ -0.19
SMC4-223ENST00000493695 HS3ST6Q96QI5 342 aa13.85□□□□□ -0.19
SMC4-223ENST00000493695 TMEM92Q6UXU6 159 aa13.84□□□□□ -0.19
SMC4-223ENST00000493695 MFRPQ9BY79 579 aa13.84□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms