RNA–Protein interactions for RNA: ENST00000489853.1

SNRNP40-206, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

TSL 2

Gene SNRNP40, Length 1,928 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-206ENST00000489853 ZNF692Q9BU19 519 aaPredicted RBP7.33□□□□□ -1.24
SNRNP40-206ENST00000489853 CLEC11AQ9Y240 323 aa7.33□□□□□ -1.24
SNRNP40-206ENST00000489853 SPDYE1Q8NFV5 336 aaPredicted RBP7.31□□□□□ -1.24
SNRNP40-206ENST00000489853 PRKAR2AP13861 404 aaKnown RBP7.31□□□□□ -1.24
SNRNP40-206ENST00000489853 PKD2Q13563 968 aa7.31□□□□□ -1.24
SNRNP40-206ENST00000489853 FAM9AQ8IZU1 332 aaPredicted RBP7.29□□□□□ -1.24
SNRNP40-206ENST00000489853 PROM2Q8N271 834 aa7.29□□□□□ -1.24
SNRNP40-206ENST00000489853 ERICH6Q7L0X2 663 aa7.25□□□□□ -1.25
SNRNP40-206ENST00000489853 ANP32EQ9BTT0 268 aa7.25□□□□□ -1.25
SNRNP40-206ENST00000489853 TAOK2Q9UL54 1235 aa7.25□□□□□ -1.25
SNRNP40-206ENST00000489853 BCANQ96GW7 911 aa7.25□□□□□ -1.25
SNRNP40-206ENST00000489853 SHROOM4Q9ULL8 1493 aa7.23□□□□□ -1.25
SNRNP40-206ENST00000489853 LOC105371045A0A1W2PR82 267 aa7.23□□□□□ -1.25
SNRNP40-206ENST00000489853 CHADLQ6NUI6 762 aa7.23□□□□□ -1.25
SNRNP40-206ENST00000489853 PABPN1Q86U42 306 aaKnown RBP eCLIP7.23□□□□□ -1.25
SNRNP40-206ENST00000489853 KDM2AQ9Y2K7 1162 aa7.23□□□□□ -1.25
SNRNP40-206ENST00000489853 C19orf67A6NJJ6 358 aa7.22□□□□□ -1.25
SNRNP40-206ENST00000489853 DIEXFQ68CQ4 756 aaKnown RBP7.22□□□□□ -1.25
SNRNP40-206ENST00000489853 PCDH10Q9P2E7 1040 aa7.2□□□□□ -1.26
SNRNP40-206ENST00000489853 NPM1P06748 294 aaKnown RBP eCLIP7.19□□□□□ -1.26
SNRNP40-206ENST00000489853 TPRNQ4KMQ1 711 aa7.18□□□□□ -1.26
SNRNP40-206ENST00000489853 VSIG10Q8N0Z9 540 aa7.18□□□□□ -1.26
SNRNP40-206ENST00000489853 PRR29P0C7W0 189 aa7.17□□□□□ -1.26
SNRNP40-206ENST00000489853 PAXIP1Q6ZW49 1069 aaPredicted RBP7.15□□□□□ -1.26
SNRNP40-206ENST00000489853 CFAP44Q96MT7 982 aa7.15□□□□□ -1.27
SNRNP40-206ENST00000489853 GABBR2O75899 941 aa7.14□□□□□ -1.27
SNRNP40-206ENST00000489853 CLSPNQ9HAW4 1339 aa7.13□□□□□ -1.27
SNRNP40-206ENST00000489853 ECM2O94769 699 aaPredicted RBP7.11□□□□□ -1.27
SNRNP40-206ENST00000489853 TRIM41Q8WV44 630 aa7.11□□□□□ -1.27
SNRNP40-206ENST00000489853 RGL2O15211 777 aa7.1□□□□□ -1.27
SNRNP40-206ENST00000489853 KLHL34Q8N239 644 aa7.1□□□□□ -1.27
SNRNP40-206ENST00000489853 BBXQ8WY36 941 aaPredicted RBP7.09□□□□□ -1.27
SNRNP40-206ENST00000489853 TSHZ2Q9NRE2 1034 aa7.08□□□□□ -1.28
SNRNP40-206ENST00000489853 ZBTB4Q9P1Z0 1013 aaPredicted RBP7.08□□□□□ -1.28
SNRNP40-206ENST00000489853 FARP1Q9Y4F1 1045 aaPredicted RBP7.08□□□□□ -1.28
SNRNP40-206ENST00000489853 CCER1Q8TC90 406 aaPredicted RBP7.07□□□□□ -1.28
SNRNP40-206ENST00000489853 SPOCK2Q92563 424 aa7.07□□□□□ -1.28
SNRNP40-206ENST00000489853 CD44P16070 742 aaKnown RBP7.06□□□□□ -1.28
SNRNP40-206ENST00000489853 ZNF316A6NFI3 1004 aaPredicted RBP7.05□□□□□ -1.28
SNRNP40-206ENST00000489853 YTHDC1Q96MU7 727 aaKnown RBP7.03□□□□□ -1.28
SNRNP40-206ENST00000489853 POTEIP0CG38 1075 aa7.02□□□□□ -1.29
SNRNP40-206ENST00000489853 RB1CC1Q8TDY2 1594 aa7.02□□□□□ -1.29
SNRNP40-206ENST00000489853 SUPT16HQ9Y5B9 1047 aaKnown RBP7.01□□□□□ -1.29
SNRNP40-206ENST00000489853 CREBZFQ9NS37 354 aa7.01□□□□□ -1.29
SNRNP40-206ENST00000489853 SPRYD3Q8NCJ5 442 aa6.99□□□□□ -1.29
SNRNP40-206ENST00000489853 MIER1Q8N108 512 aa6.99□□□□□ -1.29
SNRNP40-206ENST00000489853 CHGAP10645 457 aaKnown RBP6.98□□□□□ -1.29
SNRNP40-206ENST00000489853 PLCD3Q8N3E9 789 aa6.98□□□□□ -1.29
SNRNP40-206ENST00000489853 BICRAQ9NZM4 1560 aa6.96□□□□□ -1.29
SNRNP40-206ENST00000489853 POTEMA6NI47 508 aa6.96□□□□□ -1.3
SNRNP40-206ENST00000489853 STAG3Q9UJ98 1225 aa6.96□□□□□ -1.3
SNRNP40-206ENST00000489853 ZRANB1Q9UGI0 708 aa6.95□□□□□ -1.3
SNRNP40-206ENST00000489853 MYT1LQ9UL68 1186 aa6.95□□□□□ -1.3
SNRNP40-206ENST00000489853 UNC13AQ9UPW8 1703 aa6.95□□□□□ -1.3
SNRNP40-206ENST00000489853 ZNF579Q8NAF0 562 aaKnown RBP6.94□□□□□ -1.3
SNRNP40-206ENST00000489853 CIZ1Q9ULV3 898 aaPredicted RBP6.94□□□□□ -1.3
SNRNP40-206ENST00000489853 CLCN6P51797 869 aa6.93□□□□□ -1.3
SNRNP40-206ENST00000489853 NACADO15069 1562 aa6.93□□□□□ -1.3
SNRNP40-206ENST00000489853 POTEGQ6S5H5 508 aa6.91□□□□□ -1.3
SNRNP40-206ENST00000489853 TIMELESSQ9UNS1 1208 aa6.91□□□□□ -1.3
SNRNP40-206ENST00000489853 GALR2O43603 387 aaPredicted RBP6.89□□□□□ -1.31
SNRNP40-206ENST00000489853 DCBLD2Q96PD2 775 aa6.89□□□□□ -1.31
SNRNP40-206ENST00000489853 ZCCHC6Q5VYS8 1495 aaKnown RBP6.89□□□□□ -1.31
SNRNP40-206ENST00000489853 MNX1P50219 401 aaPredicted RBP6.88□□□□□ -1.31
SNRNP40-206ENST00000489853 RBM19Q9Y4C8 960 aaKnown RBP6.88□□□□□ -1.31
SNRNP40-206ENST00000489853 NBR1Q14596 966 aa6.88□□□□□ -1.31
SNRNP40-206ENST00000489853 RNF25Q96BH1 459 aaPredicted RBP6.88□□□□□ -1.31
SNRNP40-206ENST00000489853 TULP1O00294 542 aaPredicted RBP6.87□□□□□ -1.31
SNRNP40-206ENST00000489853 ERICH6BQ5W0A0 696 aa6.86□□□□□ -1.31
SNRNP40-206ENST00000489853 PHF12Q96QT6 1004 aa6.86□□□□□ -1.31
SNRNP40-206ENST00000489853 DNAJC5Q9H3Z4 198 aa6.86□□□□□ -1.31
SNRNP40-206ENST00000489853 ANO8Q9HCE9 1232 aaPredicted RBP6.86□□□□□ -1.31
SNRNP40-206ENST00000489853 NKX1-1Q15270 411 aaPredicted RBP6.85□□□□□ -1.31
SNRNP40-206ENST00000489853 UBE2Q2Q8WVN8 375 aa6.84□□□□□ -1.32
SNRNP40-206ENST00000489853 PAK3O75914 559 aaPredicted RBP6.83□□□□□ -1.32
SNRNP40-206ENST00000489853 HS6ST3Q8IZP7 471 aa6.82□□□□□ -1.32
SNRNP40-206ENST00000489853 FANCIQ9NVI1 1328 aa6.82□□□□□ -1.32
SNRNP40-206ENST00000489853 CC2D2AQ9P2K1 1620 aa6.8□□□□□ -1.32
SNRNP40-206ENST00000489853 DEKP35659 375 aaKnown RBP6.8□□□□□ -1.32
SNRNP40-206ENST00000489853 CECR2Q9BXF3 1484 aa6.8□□□□□ -1.32
SNRNP40-206ENST00000489853 POTEB2H3BUK9 544 aa6.8□□□□□ -1.32
SNRNP40-206ENST00000489853 GTPBP6O43824 516 aaPredicted RBP6.77□□□□□ -1.33
SNRNP40-206ENST00000489853 MS4A3Q96HJ5 214 aa6.77□□□□□ -1.33
SNRNP40-206ENST00000489853 OTUD5Q96G74 571 aa6.76□□□□□ -1.33
SNRNP40-206ENST00000489853 SALL2Q9Y467 1007 aaPredicted RBP6.76□□□□□ -1.33
SNRNP40-206ENST00000489853 WRNQ14191 1432 aaPredicted RBP eCLIP6.74□□□□□ -1.33
SNRNP40-206ENST00000489853 TSPYL2Q9H2G4 693 aaPredicted RBP6.74□□□□□ -1.33
SNRNP40-206ENST00000489853 EIF4G1Q04637 1599 aaKnown RBP6.73□□□□□ -1.33
SNRNP40-206ENST00000489853 PLEKHG5O94827 1062 aa6.73□□□□□ -1.33
SNRNP40-206ENST00000489853 NEFLP07196 543 aa6.73□□□□□ -1.33
SNRNP40-206ENST00000489853 ZBTB47Q9UFB7 747 aaPredicted RBP6.73□□□□□ -1.33
SNRNP40-206ENST00000489853 NUBP1P53384 320 aa6.72□□□□□ -1.33
SNRNP40-206ENST00000489853 ASTLQ6HA08 431 aaPredicted RBP6.72□□□□□ -1.33
SNRNP40-206ENST00000489853 STK25O00506 426 aa6.72□□□□□ -1.33
SNRNP40-206ENST00000489853 ATMINO43313 823 aaPredicted RBP6.72□□□□□ -1.33
SNRNP40-206ENST00000489853 CCDC61Q9Y6R9 512 aa6.72□□□□□ -1.33
SNRNP40-206ENST00000489853 RIOK3O14730 519 aaKnown RBP6.71□□□□□ -1.34
SNRNP40-206ENST00000489853 EIF5BO60841 1220 aaKnown RBP6.7□□□□□ -1.34
SNRNP40-206ENST00000489853 DCAF8Q5TAQ9 597 aa6.7□□□□□ -1.34
SNRNP40-206ENST00000489853 METRNQ9UJH8 293 aa6.7□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms