RNA–Protein interactions for RNA: ENST00000486941.1

SNRNP40-205, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

TSL 2

Gene SNRNP40, Length 743 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-205ENST00000486941 PELP1Q8IZL8 1130 aaKnown RBP13.05□□□□□ -0.32
SNRNP40-205ENST00000486941 NUBP1P53384 320 aa13.03□□□□□ -0.32
SNRNP40-205ENST00000486941 KIF12Q96FN5 646 aa13.02□□□□□ -0.33
SNRNP40-205ENST00000486941 PLEKHG5O94827 1062 aa12.98□□□□□ -0.33
SNRNP40-205ENST00000486941 TRPC6Q9Y210 931 aa12.98□□□□□ -0.33
SNRNP40-205ENST00000486941 POTEB2H3BUK9 544 aa12.96□□□□□ -0.33
SNRNP40-205ENST00000486941 MAP3K13O43283 966 aa12.95□□□□□ -0.34
SNRNP40-205ENST00000486941 ATMINO43313 823 aaPredicted RBP12.93□□□□□ -0.34
SNRNP40-205ENST00000486941 ASTLQ6HA08 431 aaPredicted RBP12.93□□□□□ -0.34
SNRNP40-205ENST00000486941 FBXO3Q9UK99 471 aa12.88□□□□□ -0.35
SNRNP40-205ENST00000486941 VASPP50552 380 aaPredicted RBP12.86□□□□□ -0.35
SNRNP40-205ENST00000486941 ATN1P54259 1190 aaPredicted RBP12.86□□□□□ -0.35
SNRNP40-205ENST00000486941 BMP2KQ9NSY1 1161 aaPredicted RBP12.85□□□□□ -0.35
SNRNP40-205ENST00000486941 ZBTB47Q9UFB7 747 aaPredicted RBP12.85□□□□□ -0.35
SNRNP40-205ENST00000486941 POTEJP0CG39 1038 aa12.82□□□□□ -0.36
SNRNP40-205ENST00000486941 OTUD5Q96G74 571 aa12.8□□□□□ -0.36
SNRNP40-205ENST00000486941 POTEFA5A3E0 1075 aa12.79□□□□□ -0.36
SNRNP40-205ENST00000486941 METRNQ9UJH8 293 aa12.78□□□□□ -0.36
SNRNP40-205ENST00000486941 IFNL1Q8IU54 200 aa12.77□□□□□ -0.37
SNRNP40-205ENST00000486941 FAM212AQ96EL1 285 aa12.76□□□□□ -0.37
SNRNP40-205ENST00000486941 PCDHB13Q9Y5F0 798 aa12.76□□□□□ -0.37
SNRNP40-205ENST00000486941 TTLL13PA6NNM8 815 aa12.74□□□□□ -0.37
SNRNP40-205ENST00000486941 TIE1P35590 1138 aa12.74□□□□□ -0.37
SNRNP40-205ENST00000486941 SLC39A7Q92504 469 aa12.74□□□□□ -0.37
SNRNP40-205ENST00000486941 C7P10643 843 aa12.73□□□□□ -0.37
SNRNP40-205ENST00000486941 DCAF8Q5TAQ9 597 aa12.73□□□□□ -0.37
SNRNP40-205ENST00000486941 IFNLR1Q8IU57 520 aaPredicted RBP12.73□□□□□ -0.37
SNRNP40-205ENST00000486941 SGIP1Q9BQI5 828 aa12.73□□□□□ -0.37
SNRNP40-205ENST00000486941 PYGBP11216 843 aa12.71□□□□□ -0.37
SNRNP40-205ENST00000486941 KLHL34Q8N239 644 aa12.69□□□□□ -0.38
SNRNP40-205ENST00000486941 COLQQ9Y215 455 aaPredicted RBP12.67□□□□□ -0.38
SNRNP40-205ENST00000486941 PCDHB8Q9UN66 801 aa12.64□□□□□ -0.39
SNRNP40-205ENST00000486941 TRIM35Q9UPQ4 493 aa12.63□□□□□ -0.39
SNRNP40-205ENST00000486941 TMEM106CQ9BVX2 250 aa12.6□□□□□ -0.39
SNRNP40-205ENST00000486941 GSE1Q14687 1217 aa12.55□□□□□ -0.4
SNRNP40-205ENST00000486941 CHRM1P11229 460 aaPredicted RBP12.54□□□□□ -0.4
SNRNP40-205ENST00000486941 SPOCK2Q92563 424 aa12.54□□□□□ -0.4
SNRNP40-205ENST00000486941 IER5LQ5T953 404 aa12.51□□□□□ -0.41
SNRNP40-205ENST00000486941 IRX5P78411 483 aaPredicted RBP12.49□□□□□ -0.41
SNRNP40-205ENST00000486941 SEC24BO95487 1268 aa12.47□□□□□ -0.41
SNRNP40-205ENST00000486941 CIZ1Q9ULV3 898 aaPredicted RBP12.45□□□□□ -0.42
SNRNP40-205ENST00000486941 LCE2DQ5TA82 110 aaPredicted RBP12.44□□□□□ -0.42
SNRNP40-205ENST00000486941 MAMSTRQ6ZN01 415 aa12.44□□□□□ -0.42
SNRNP40-205ENST00000486941 ZNF467Q7Z7K2 595 aaPredicted RBP12.42□□□□□ -0.42
SNRNP40-205ENST00000486941 SCUBE2Q9NQ36 999 aa12.4□□□□□ -0.42
SNRNP40-205ENST00000486941 PSEN1P49768 467 aa12.39□□□□□ -0.43
SNRNP40-205ENST00000486941 PLCG2P16885 1265 aa12.36□□□□□ -0.43
SNRNP40-205ENST00000486941 OCEL1Q9H607 264 aa12.36□□□□□ -0.43
SNRNP40-205ENST00000486941 PDCD7Q8N8D1 485 aaKnown RBP12.35□□□□□ -0.43
SNRNP40-205ENST00000486941 PDAP1Q13442 181 aaKnown RBP12.31□□□□□ -0.44
SNRNP40-205ENST00000486941 POTEMA6NI47 508 aa12.3□□□□□ -0.44
SNRNP40-205ENST00000486941 POTEGQ6S5H5 508 aa12.29□□□□□ -0.44
SNRNP40-205ENST00000486941 ILDR1Q86SU0 546 aaPredicted RBP12.29□□□□□ -0.44
SNRNP40-205ENST00000486941 RNF25Q96BH1 459 aaPredicted RBP12.29□□□□□ -0.44
SNRNP40-205ENST00000486941 FAM163AQ96GL9 167 aaPredicted RBP12.29□□□□□ -0.44
SNRNP40-205ENST00000486941 DPY19L2Q6NUT2 758 aa12.26□□□□□ -0.45
SNRNP40-205ENST00000486941 SLAIN1Q8ND83 568 aa12.25□□□□□ -0.45
SNRNP40-205ENST00000486941 CABP2Q9NPB3 220 aa12.24□□□□□ -0.45
SNRNP40-205ENST00000486941 MKRN3Q13064 507 aaKnown RBP12.23□□□□□ -0.45
SNRNP40-205ENST00000486941 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.23□□□□□ -0.45
SNRNP40-205ENST00000486941 GOLGA2Q08379 1002 aa12.19□□□□□ -0.46
SNRNP40-205ENST00000486941 TRIM41Q8WV44 630 aa12.19□□□□□ -0.46
SNRNP40-205ENST00000486941 EFCAB3Q8N7B9 438 aa12.16□□□□□ -0.46
SNRNP40-205ENST00000486941 RIOK3O14730 519 aaKnown RBP12.13□□□□□ -0.47
SNRNP40-205ENST00000486941 ST18O60284 1047 aa12.13□□□□□ -0.47
SNRNP40-205ENST00000486941 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.12□□□□□ -0.47
SNRNP40-205ENST00000486941 ZFP91Q96JP5 570 aaPredicted RBP12.12□□□□□ -0.47
SNRNP40-205ENST00000486941 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.12□□□□□ -0.47
SNRNP40-205ENST00000486941 L3MBTL3Q96JM7 780 aaPredicted RBP12.1□□□□□ -0.47
SNRNP40-205ENST00000486941 PKD2Q13563 968 aa12.08□□□□□ -0.48
SNRNP40-205ENST00000486941 PLSCR2Q9NRY7 297 aa12.07□□□□□ -0.48
SNRNP40-205ENST00000486941 MS4A4AQ96JQ5 239 aa12.06□□□□□ -0.48
SNRNP40-205ENST00000486941 VGFO15240 615 aaPredicted RBP12.05□□□□□ -0.48
SNRNP40-205ENST00000486941 BOLA1Q9Y3E2 137 aa12.04□□□□□ -0.48
SNRNP40-205ENST00000486941 C3orf67Q6ZVT6 689 aa12.03□□□□□ -0.48
SNRNP40-205ENST00000486941 TMEM121BQ9BXQ6 578 aaPredicted RBP12.03□□□□□ -0.48
SNRNP40-205ENST00000486941 PHF8Q9UPP1 1060 aa12.01□□□□□ -0.49
SNRNP40-205ENST00000486941 RGL2O15211 777 aa11.99□□□□□ -0.49
SNRNP40-205ENST00000486941 ECM2O94769 699 aaPredicted RBP11.98□□□□□ -0.49
SNRNP40-205ENST00000486941 PCDH10Q9P2E7 1040 aa11.98□□□□□ -0.49
SNRNP40-205ENST00000486941 TMEM92Q6UXU6 159 aa11.97□□□□□ -0.49
SNRNP40-205ENST00000486941 SOX12O15370 315 aa11.96□□□□□ -0.49
SNRNP40-205ENST00000486941 MARVELD3Q96A59 401 aa11.96□□□□□ -0.49
SNRNP40-205ENST00000486941 BCL11BQ9C0K0 894 aaPredicted RBP11.96□□□□□ -0.49
SNRNP40-205ENST00000486941 CDAN1Q8IWY9 1227 aa11.94□□□□□ -0.5
SNRNP40-205ENST00000486941 FBXO22Q8NEZ5 403 aa11.94□□□□□ -0.5
SNRNP40-205ENST00000486941 HOXB3P14651 431 aaPredicted RBP11.93□□□□□ -0.5
SNRNP40-205ENST00000486941 MICALL2Q8IY33 904 aa11.93□□□□□ -0.5
SNRNP40-205ENST00000486941 SNPHO15079 494 aa11.92□□□□□ -0.5
SNRNP40-205ENST00000486941 POTEB3A0JP26 581 aa11.91□□□□□ -0.5
SNRNP40-205ENST00000486941 POTEBQ6S5H4 581 aa11.91□□□□□ -0.5
SNRNP40-205ENST00000486941 MFRPQ9BY79 579 aa11.9□□□□□ -0.5
SNRNP40-205ENST00000486941 STK24Q9Y6E0 443 aa11.9□□□□□ -0.5
SNRNP40-205ENST00000486941 STK25O00506 426 aa11.86□□□□□ -0.51
SNRNP40-205ENST00000486941 G3V3G9 751 aa11.85□□□□□ -0.51
SNRNP40-205ENST00000486941 NLRP6P59044 892 aa11.82□□□□□ -0.52
SNRNP40-205ENST00000486941 EMP3P54852 163 aa11.78□□□□□ -0.52
SNRNP40-205ENST00000486941 TAOK2Q9UL54 1235 aa11.78□□□□□ -0.52
SNRNP40-205ENST00000486941 PPP1R37O75864 691 aa11.76□□□□□ -0.53
SNRNP40-205ENST00000486941 HS3ST6Q96QI5 342 aa11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms