RNA–Protein interactions for RNA: ENST00000486618.1

HDAC3-209, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 711 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-209ENST00000486618 TRIM41Q8WV44 630 aa13.03□□□□□ -0.32
HDAC3-209ENST00000486618 KIF21AQ7Z4S6 1674 aa13□□□□□ -0.33
HDAC3-209ENST00000486618 SLC24A1O60721 1099 aa12.95□□□□□ -0.34
HDAC3-209ENST00000486618 CADPSQ9ULU8 1353 aa12.94□□□□□ -0.34
HDAC3-209ENST00000486618 MROH2BQ7Z745 1585 aa12.93□□□□□ -0.34
HDAC3-209ENST00000486618 MRC2Q9UBG0 1479 aa12.91□□□□□ -0.34
HDAC3-209ENST00000486618 PRR29P0C7W0 189 aa12.9□□□□□ -0.34
HDAC3-209ENST00000486618 WDR62O43379 1518 aa12.88□□□□□ -0.35
HDAC3-209ENST00000486618 PRKAR2AP13861 404 aaKnown RBP12.87□□□□□ -0.35
HDAC3-209ENST00000486618 PROM2Q8N271 834 aa12.82□□□□□ -0.36
HDAC3-209ENST00000486618 CEP164Q9UPV0 1460 aa12.82□□□□□ -0.36
HDAC3-209ENST00000486618 STAG3Q9UJ98 1225 aa12.81□□□□□ -0.36
HDAC3-209ENST00000486618 CHADLQ6NUI6 762 aa12.8□□□□□ -0.36
HDAC3-209ENST00000486618 FANCD2Q9BXW9 1451 aa12.78□□□□□ -0.36
HDAC3-209ENST00000486618 WIZO95785 1651 aa12.77□□□□□ -0.37
HDAC3-209ENST00000486618 FKBP8Q14318 412 aa12.73□□□□□ -0.37
HDAC3-209ENST00000486618 HAX1O00165 279 aa12.72□□□□□ -0.37
HDAC3-209ENST00000486618 CFTRP13569 1480 aa12.72□□□□□ -0.37
HDAC3-209ENST00000486618 CREBZFQ9NS37 354 aa12.67□□□□□ -0.38
HDAC3-209ENST00000486618 URB2Q14146 1524 aaKnown RBP12.66□□□□□ -0.38
HDAC3-209ENST00000486618 SP7Q8TDD2 431 aaPredicted RBP12.63□□□□□ -0.39
HDAC3-209ENST00000486618 FARP1Q9Y4F1 1045 aaPredicted RBP12.63□□□□□ -0.39
HDAC3-209ENST00000486618 EVX2Q03828 476 aa12.62□□□□□ -0.39
HDAC3-209ENST00000486618 RIMBP3CA6NJZ7 1639 aa12.62□□□□□ -0.39
HDAC3-209ENST00000486618 RIMBP3BA6NNM3 1639 aa12.62□□□□□ -0.39
HDAC3-209ENST00000486618 RIMBP3Q9UFD9 1639 aa12.62□□□□□ -0.39
HDAC3-209ENST00000486618 C19orf67A6NJJ6 358 aa12.61□□□□□ -0.39
HDAC3-209ENST00000486618 TOP2AP11388 1531 aaKnown RBP12.61□□□□□ -0.39
HDAC3-209ENST00000486618 RSF1Q96T23 1441 aaPredicted RBP12.59□□□□□ -0.39
HDAC3-209ENST00000486618 IFT140Q96RY7 1462 aa12.58□□□□□ -0.4
HDAC3-209ENST00000486618 PRDM2Q13029 1718 aa12.57□□□□□ -0.4
HDAC3-209ENST00000486618 ARHGEF11O15085 1522 aa12.56□□□□□ -0.4
HDAC3-209ENST00000486618 ZNF608Q9ULD9 1512 aaPredicted RBP12.53□□□□□ -0.4
HDAC3-209ENST00000486618 CYB5RLQ6IPT4 315 aa12.52□□□□□ -0.41
HDAC3-209ENST00000486618 ABCC8Q09428 1581 aa12.51□□□□□ -0.41
HDAC3-209ENST00000486618 MNX1P50219 401 aaPredicted RBP12.5□□□□□ -0.41
HDAC3-209ENST00000486618 TOPBP1Q92547 1522 aa12.49□□□□□ -0.41
HDAC3-209ENST00000486618 CD44P16070 742 aaKnown RBP12.48□□□□□ -0.41
HDAC3-209ENST00000486618 CCDC88BA6NC98 1476 aa12.46□□□□□ -0.41
HDAC3-209ENST00000486618 EIF4G3O43432 1585 aaKnown RBP12.46□□□□□ -0.42
HDAC3-209ENST00000486618 DNMBPQ6XZF7 1577 aa12.43□□□□□ -0.42
HDAC3-209ENST00000486618 CHD1O14646 1710 aa12.42□□□□□ -0.42
HDAC3-209ENST00000486618 AQRO60306 1485 aaKnown RBP eCLIP12.41□□□□□ -0.42
HDAC3-209ENST00000486618 NPM1P06748 294 aaKnown RBP eCLIP12.41□□□□□ -0.42
HDAC3-209ENST00000486618 MIER1Q8N108 512 aa12.41□□□□□ -0.42
HDAC3-209ENST00000486618 ARAP1Q96P48 1450 aa12.4□□□□□ -0.42
HDAC3-209ENST00000486618 TARBP1Q13395 1621 aaKnown RBP12.39□□□□□ -0.43
HDAC3-209ENST00000486618 PLEKHG5O94827 1062 aa12.38□□□□□ -0.43
HDAC3-209ENST00000486618 PLCD3Q8N3E9 789 aa12.36□□□□□ -0.43
HDAC3-209ENST00000486618 FBXO3Q9UK99 471 aa12.36□□□□□ -0.43
HDAC3-209ENST00000486618 ZRANB1Q9UGI0 708 aa12.35□□□□□ -0.43
HDAC3-209ENST00000486618 POLA1P09884 1462 aaPredicted RBP12.34□□□□□ -0.43
HDAC3-209ENST00000486618 GABBR2O75899 941 aa12.34□□□□□ -0.43
HDAC3-209ENST00000486618 SOGA1O94964 1423 aa12.32□□□□□ -0.44
HDAC3-209ENST00000486618 TDRD9Q8NDG6 1382 aaKnown RBP12.31□□□□□ -0.44
HDAC3-209ENST00000486618 ZNF579Q8NAF0 562 aaKnown RBP12.31□□□□□ -0.44
HDAC3-209ENST00000486618 CHMP7Q8WUX9 453 aaPredicted RBP12.31□□□□□ -0.44
HDAC3-209ENST00000486618 RAD54L2Q9Y4B4 1467 aa12.3□□□□□ -0.44
HDAC3-209ENST00000486618 PAK3O75914 559 aaPredicted RBP12.3□□□□□ -0.44
HDAC3-209ENST00000486618 WDR97A6NE52 1622 aa12.29□□□□□ -0.44
HDAC3-209ENST00000486618 SYNJ1O43426 1573 aa12.28□□□□□ -0.44
HDAC3-209ENST00000486618 SNAPC4Q5SXM2 1469 aa12.27□□□□□ -0.44
HDAC3-209ENST00000486618 CLASP1Q7Z460 1538 aa12.27□□□□□ -0.45
HDAC3-209ENST00000486618 MAGI1Q96QZ7 1491 aaPredicted RBP12.26□□□□□ -0.45
HDAC3-209ENST00000486618 ZBTB47Q9UFB7 747 aaPredicted RBP12.24□□□□□ -0.45
HDAC3-209ENST00000486618 GRIN2BQ13224 1484 aa12.23□□□□□ -0.45
HDAC3-209ENST00000486618 FGD5Q6ZNL6 1462 aa12.23□□□□□ -0.45
HDAC3-209ENST00000486618 VASPP50552 380 aaPredicted RBP12.23□□□□□ -0.45
HDAC3-209ENST00000486618 CLCN6P51797 869 aa12.23□□□□□ -0.45
HDAC3-209ENST00000486618 SYNJ2O15056 1496 aa12.22□□□□□ -0.45
HDAC3-209ENST00000486618 PHF12Q96QT6 1004 aa12.22□□□□□ -0.45
HDAC3-209ENST00000486618 TSPYL2Q9H2G4 693 aaPredicted RBP12.22□□□□□ -0.45
HDAC3-209ENST00000486618 RASEFQ8IZ41 740 aa12.2□□□□□ -0.46
HDAC3-209ENST00000486618 GAPVD1Q14C86 1478 aa12.19□□□□□ -0.46
HDAC3-209ENST00000486618 CUX1P39880 1505 aa12.16□□□□□ -0.46
HDAC3-209ENST00000486618 NUBP1P53384 320 aa12.16□□□□□ -0.46
HDAC3-209ENST00000486618 CCDC61Q9Y6R9 512 aa12.16□□□□□ -0.46
HDAC3-209ENST00000486618 GALR2O43603 387 aaPredicted RBP12.15□□□□□ -0.46
HDAC3-209ENST00000486618 PBRM1Q86U86 1689 aa12.13□□□□□ -0.47
HDAC3-209ENST00000486618 POTEIP0CG38 1075 aa12.1□□□□□ -0.47
HDAC3-209ENST00000486618 ABCA10Q8WWZ4 1543 aa12.09□□□□□ -0.47
HDAC3-209ENST00000486618 KLHL34Q8N239 644 aa12.07□□□□□ -0.48
HDAC3-209ENST00000486618 MS4A3Q96HJ5 214 aa12.07□□□□□ -0.48
HDAC3-209ENST00000486618 DCBLD2Q96PD2 775 aa12.07□□□□□ -0.48
HDAC3-209ENST00000486618 ABCA5Q8WWZ7 1642 aa12.07□□□□□ -0.48
HDAC3-209ENST00000486618 FAM212AQ96EL1 285 aa12.06□□□□□ -0.48
HDAC3-209ENST00000486618 GRIN2AQ12879 1464 aa12.06□□□□□ -0.48
HDAC3-209ENST00000486618 KIF12Q96FN5 646 aa12.05□□□□□ -0.48
HDAC3-209ENST00000486618 IFNLR1Q8IU57 520 aaPredicted RBP12.04□□□□□ -0.48
HDAC3-209ENST00000486618 CEP170Q5SW79 1584 aa12.03□□□□□ -0.48
HDAC3-209ENST00000486618 ERCC6L2Q5T890 1561 aa12.03□□□□□ -0.48
HDAC3-209ENST00000486618 NUP160Q12769 1436 aa12.03□□□□□ -0.48
HDAC3-209ENST00000486618 WRNQ14191 1432 aaPredicted RBP eCLIP12.02□□□□□ -0.49
HDAC3-209ENST00000486618 MAP3K13O43283 966 aa12□□□□□ -0.49
HDAC3-209ENST00000486618 FHAD1B1AJZ9 1412 aa12□□□□□ -0.49
HDAC3-209ENST00000486618 ADAMTS12P58397 1594 aa12□□□□□ -0.49
HDAC3-209ENST00000486618 SHROOM2Q13796 1616 aa11.99□□□□□ -0.49
HDAC3-209ENST00000486618 DCAF8Q5TAQ9 597 aa11.98□□□□□ -0.49
HDAC3-209ENST00000486618 KIF13AQ9H1H9 1805 aa11.97□□□□□ -0.49
HDAC3-209ENST00000486618 PRG4Q92954 1404 aaPredicted RBP11.95□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms