RNA–Protein interactions for RNA: ENST00000484203.5

PTCD3-215, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 2

Gene PTCD3, Length 928 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-215ENST00000484203 TOP2AP11388 1531 aaKnown RBP11.23□□□□□ -0.61
PTCD3-215ENST00000484203 CFTRP13569 1480 aa11.22□□□□□ -0.61
PTCD3-215ENST00000484203 MRC2Q9UBG0 1479 aa11.19□□□□□ -0.62
PTCD3-215ENST00000484203 PIP4P2Q8N4L2 257 aa11.18□□□□□ -0.62
PTCD3-215ENST00000484203 CEP164Q9UPV0 1460 aa11.18□□□□□ -0.62
PTCD3-215ENST00000484203 FANCD2Q9BXW9 1451 aa11.17□□□□□ -0.62
PTCD3-215ENST00000484203 SPDYE1Q8NFV5 336 aaPredicted RBP11.16□□□□□ -0.62
PTCD3-215ENST00000484203 PROM2Q8N271 834 aa11.15□□□□□ -0.62
PTCD3-215ENST00000484203 THOC2Q8NI27 1593 aaKnown RBP11.15□□□□□ -0.62
PTCD3-215ENST00000484203 FXR2P51116 673 aaKnown RBP eCLIP11.14□□□□□ -0.63
PTCD3-215ENST00000484203 WDR62O43379 1518 aa11.12□□□□□ -0.63
PTCD3-215ENST00000484203 CCDC88BA6NC98 1476 aa11.11□□□□□ -0.63
PTCD3-215ENST00000484203 CLEC11AQ9Y240 323 aa11.1□□□□□ -0.63
PTCD3-215ENST00000484203 KIF21AQ7Z4S6 1674 aa11.07□□□□□ -0.64
PTCD3-215ENST00000484203 ABCC8Q09428 1581 aa11.04□□□□□ -0.64
PTCD3-215ENST00000484203 STAG3Q9UJ98 1225 aa11.03□□□□□ -0.64
PTCD3-215ENST00000484203 FBXO3Q9UK99 471 aa11.02□□□□□ -0.65
PTCD3-215ENST00000484203 URB2Q14146 1524 aaKnown RBP11.01□□□□□ -0.65
PTCD3-215ENST00000484203 HAX1O00165 279 aa10.99□□□□□ -0.65
PTCD3-215ENST00000484203 IFT140Q96RY7 1462 aa10.99□□□□□ -0.65
PTCD3-215ENST00000484203 PRKAR2AP13861 404 aaKnown RBP10.98□□□□□ -0.65
PTCD3-215ENST00000484203 SUPT5HO00267 1087 aaKnown RBP10.96□□□□□ -0.65
PTCD3-215ENST00000484203 SP7Q8TDD2 431 aaPredicted RBP10.96□□□□□ -0.65
PTCD3-215ENST00000484203 PRR29P0C7W0 189 aa10.95□□□□□ -0.66
PTCD3-215ENST00000484203 TOPBP1Q92547 1522 aa10.94□□□□□ -0.66
PTCD3-215ENST00000484203 DNMBPQ6XZF7 1577 aa10.9□□□□□ -0.66
PTCD3-215ENST00000484203 PRDM2Q13029 1718 aa10.87□□□□□ -0.67
PTCD3-215ENST00000484203 SOGA1O94964 1423 aa10.85□□□□□ -0.67
PTCD3-215ENST00000484203 VASPP50552 380 aaPredicted RBP10.85□□□□□ -0.67
PTCD3-215ENST00000484203 ZNF608Q9ULD9 1512 aaPredicted RBP10.84□□□□□ -0.67
PTCD3-215ENST00000484203 MIER1Q8N108 512 aa10.84□□□□□ -0.67
PTCD3-215ENST00000484203 POLA1P09884 1462 aaPredicted RBP10.84□□□□□ -0.67
PTCD3-215ENST00000484203 CHADLQ6NUI6 762 aa10.82□□□□□ -0.68
PTCD3-215ENST00000484203 PLCD3Q8N3E9 789 aa10.82□□□□□ -0.68
PTCD3-215ENST00000484203 AQRO60306 1485 aaKnown RBP eCLIP10.81□□□□□ -0.688e-8■■■■■ 29
PTCD3-215ENST00000484203 TDRD9Q8NDG6 1382 aaKnown RBP10.79□□□□□ -0.68
PTCD3-215ENST00000484203 PLEKHG5O94827 1062 aa10.79□□□□□ -0.68
PTCD3-215ENST00000484203 WDR97A6NE52 1622 aa10.78□□□□□ -0.68
PTCD3-215ENST00000484203 C19orf67A6NJJ6 358 aa10.78□□□□□ -0.68
PTCD3-215ENST00000484203 TRIM41Q8WV44 630 aa10.78□□□□□ -0.68
PTCD3-215ENST00000484203 FGD5Q6ZNL6 1462 aa10.78□□□□□ -0.68
PTCD3-215ENST00000484203 RAD54L2Q9Y4B4 1467 aa10.77□□□□□ -0.69
PTCD3-215ENST00000484203 CHMP7Q8WUX9 453 aaPredicted RBP10.77□□□□□ -0.69
PTCD3-215ENST00000484203 TARBP1Q13395 1621 aaKnown RBP10.76□□□□□ -0.69
PTCD3-215ENST00000484203 WRNQ14191 1432 aaPredicted RBP eCLIP10.76□□□□□ -0.69
PTCD3-215ENST00000484203 CUX1P39880 1505 aa10.76□□□□□ -0.69
PTCD3-215ENST00000484203 EVX2Q03828 476 aa10.76□□□□□ -0.69
PTCD3-215ENST00000484203 CREBZFQ9NS37 354 aa10.76□□□□□ -0.69
PTCD3-215ENST00000484203 GRIN2BQ13224 1484 aa10.75□□□□□ -0.69
PTCD3-215ENST00000484203 EIF4G3O43432 1585 aaKnown RBP10.75□□□□□ -0.69
PTCD3-215ENST00000484203 MAGI1Q96QZ7 1491 aaPredicted RBP10.74□□□□□ -0.69
PTCD3-215ENST00000484203 FARP1Q9Y4F1 1045 aaPredicted RBP10.73□□□□□ -0.69
PTCD3-215ENST00000484203 KLHL34Q8N239 644 aa10.72□□□□□ -0.69
PTCD3-215ENST00000484203 GAPVD1Q14C86 1478 aa10.71□□□□□ -0.69
PTCD3-215ENST00000484203 IFNLR1Q8IU57 520 aaPredicted RBP10.71□□□□□ -0.69
PTCD3-215ENST00000484203 ABCA10Q8WWZ4 1543 aa10.71□□□□□ -0.69
PTCD3-215ENST00000484203 SNAPC4Q5SXM2 1469 aa10.69□□□□□ -0.7
PTCD3-215ENST00000484203 SYNJ2O15056 1496 aa10.68□□□□□ -0.7
PTCD3-215ENST00000484203 ZBTB47Q9UFB7 747 aaPredicted RBP10.68□□□□□ -0.7
PTCD3-215ENST00000484203 ARHGEF11O15085 1522 aa10.66□□□□□ -0.7
PTCD3-215ENST00000484203 CYB5RLQ6IPT4 315 aa10.65□□□□□ -0.7
PTCD3-215ENST00000484203 CD44P16070 742 aaKnown RBP10.64□□□□□ -0.71
PTCD3-215ENST00000484203 MNX1P50219 401 aaPredicted RBP10.64□□□□□ -0.71
PTCD3-215ENST00000484203 TOP2BQ02880 1626 aa10.64□□□□□ -0.71
PTCD3-215ENST00000484203 SYNJ1O43426 1573 aa10.63□□□□□ -0.71
PTCD3-215ENST00000484203 FHAD1B1AJZ9 1412 aa10.61□□□□□ -0.71
PTCD3-215ENST00000484203 NPM1P06748 294 aaKnown RBP eCLIP10.61□□□□□ -0.71
PTCD3-215ENST00000484203 RIMBP3CA6NJZ7 1639 aa10.6□□□□□ -0.71
PTCD3-215ENST00000484203 RIMBP3BA6NNM3 1639 aa10.6□□□□□ -0.71
PTCD3-215ENST00000484203 RIMBP3Q9UFD9 1639 aa10.6□□□□□ -0.71
PTCD3-215ENST00000484203 GABBR2O75899 941 aa10.59□□□□□ -0.71
PTCD3-215ENST00000484203 SPOCK2Q92563 424 aa10.59□□□□□ -0.71
PTCD3-215ENST00000484203 ERICH3Q5RHP9 1530 aa10.58□□□□□ -0.72
PTCD3-215ENST00000484203 ABCA5Q8WWZ7 1642 aa10.58□□□□□ -0.72
PTCD3-215ENST00000484203 BIVM-ERCC5R4GMW8 1640 aa10.58□□□□□ -0.72
PTCD3-215ENST00000484203 CLCN6P51797 869 aa10.58□□□□□ -0.72
PTCD3-215ENST00000484203 GRIN2AQ12879 1464 aa10.57□□□□□ -0.72
PTCD3-215ENST00000484203 CLASP1Q7Z460 1538 aa10.57□□□□□ -0.72
PTCD3-215ENST00000484203 KIF27Q86VH2 1401 aa10.56□□□□□ -0.72
PTCD3-215ENST00000484203 CHD1O14646 1710 aa10.55□□□□□ -0.72
PTCD3-215ENST00000484203 NUP160Q12769 1436 aa10.55□□□□□ -0.72
PTCD3-215ENST00000484203 ARAP1Q96P48 1450 aa10.55□□□□□ -0.72
PTCD3-215ENST00000484203 PAK3O75914 559 aaPredicted RBP10.52□□□□□ -0.73
PTCD3-215ENST00000484203 IGF1RP08069 1367 aa10.52□□□□□ -0.73
PTCD3-215ENST00000484203 NUBP1P53384 320 aa10.51□□□□□ -0.73
PTCD3-215ENST00000484203 ADAMTS12P58397 1594 aa10.51□□□□□ -0.73
PTCD3-215ENST00000484203 JPH4Q96JJ6 628 aa10.5□□□□□ -0.73
PTCD3-215ENST00000484203 ZRANB1Q9UGI0 708 aa10.5□□□□□ -0.73
PTCD3-215ENST00000484203 PBRM1Q86U86 1689 aa10.5□□□□□ -0.73
PTCD3-215ENST00000484203 ZNF579Q8NAF0 562 aaKnown RBP10.49□□□□□ -0.73
PTCD3-215ENST00000484203 RASEFQ8IZ41 740 aa10.48□□□□□ -0.73
PTCD3-215ENST00000484203 DCAF8Q5TAQ9 597 aa10.47□□□□□ -0.73
PTCD3-215ENST00000484203 FAM212AQ96EL1 285 aa10.46□□□□□ -0.73
PTCD3-215ENST00000484203 TSPYL2Q9H2G4 693 aaPredicted RBP10.46□□□□□ -0.73
PTCD3-215ENST00000484203 CIZ1Q9ULV3 898 aaPredicted RBP10.46□□□□□ -0.73
PTCD3-215ENST00000484203 CARMIL1Q5VZK9 1371 aa10.46□□□□□ -0.74
PTCD3-215ENST00000484203 PRG4Q92954 1404 aaPredicted RBP10.45□□□□□ -0.74
PTCD3-215ENST00000484203 KIAA0586Q9BVV6 1533 aa10.44□□□□□ -0.74
PTCD3-215ENST00000484203 CEP170Q5SW79 1584 aa10.43□□□□□ -0.74
PTCD3-215ENST00000484203 GSE1Q14687 1217 aa10.42□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms