RNA–Protein interactions for RNA: ENST00000483925.1

PTCD3-214, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 576 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-214ENST00000483925 ZBTB47Q9UFB7 747 aaPredicted RBP11.15□□□□□ -0.62
PTCD3-214ENST00000483925 RASEFQ8IZ41 740 aa11.13□□□□□ -0.63
PTCD3-214ENST00000483925 KIF12Q96FN5 646 aa11.11□□□□□ -0.63
PTCD3-214ENST00000483925 ASTLQ6HA08 431 aaPredicted RBP11.09□□□□□ -0.63
PTCD3-214ENST00000483925 PELP1Q8IZL8 1130 aaKnown RBP11.08□□□□□ -0.64
PTCD3-214ENST00000483925 FBXO3Q9UK99 471 aa11.08□□□□□ -0.64
PTCD3-214ENST00000483925 ATMINO43313 823 aaPredicted RBP11.07□□□□□ -0.64
PTCD3-214ENST00000483925 MAP3K13O43283 966 aa11.05□□□□□ -0.64
PTCD3-214ENST00000483925 NUBP1P53384 320 aa11.05□□□□□ -0.64
PTCD3-214ENST00000483925 SLC39A7Q92504 469 aa11.02□□□□□ -0.65
PTCD3-214ENST00000483925 C7P10643 843 aa11.01□□□□□ -0.65
PTCD3-214ENST00000483925 POTEB2H3BUK9 544 aa11□□□□□ -0.65
PTCD3-214ENST00000483925 METRNQ9UJH8 293 aa11□□□□□ -0.65
PTCD3-214ENST00000483925 FAM212AQ96EL1 285 aa10.99□□□□□ -0.65
PTCD3-214ENST00000483925 ATN1P54259 1190 aaPredicted RBP10.98□□□□□ -0.65
PTCD3-214ENST00000483925 TIE1P35590 1138 aa10.97□□□□□ -0.65
PTCD3-214ENST00000483925 SGIP1Q9BQI5 828 aa10.97□□□□□ -0.65
PTCD3-214ENST00000483925 TRPC6Q9Y210 931 aa10.97□□□□□ -0.65
PTCD3-214ENST00000483925 OTUD5Q96G74 571 aa10.96□□□□□ -0.65
PTCD3-214ENST00000483925 BMP2KQ9NSY1 1161 aaPredicted RBP10.96□□□□□ -0.65
PTCD3-214ENST00000483925 PCDHB13Q9Y5F0 798 aa10.95□□□□□ -0.66
PTCD3-214ENST00000483925 VASPP50552 380 aaPredicted RBP10.91□□□□□ -0.66
PTCD3-214ENST00000483925 DCAF8Q5TAQ9 597 aa10.91□□□□□ -0.66
PTCD3-214ENST00000483925 TTLL13PA6NNM8 815 aa10.89□□□□□ -0.67
PTCD3-214ENST00000483925 KLHL34Q8N239 644 aa10.89□□□□□ -0.67
PTCD3-214ENST00000483925 IFNL1Q8IU54 200 aa10.87□□□□□ -0.67
PTCD3-214ENST00000483925 POTEJP0CG39 1038 aa10.85□□□□□ -0.67
PTCD3-214ENST00000483925 MAMSTRQ6ZN01 415 aa10.85□□□□□ -0.67
PTCD3-214ENST00000483925 TRIM35Q9UPQ4 493 aa10.83□□□□□ -0.68
PTCD3-214ENST00000483925 POTEFA5A3E0 1075 aa10.82□□□□□ -0.68
PTCD3-214ENST00000483925 PYGBP11216 843 aa10.82□□□□□ -0.68
PTCD3-214ENST00000483925 SEC24BO95487 1268 aa10.81□□□□□ -0.68
PTCD3-214ENST00000483925 IER5LQ5T953 404 aa10.8□□□□□ -0.68
PTCD3-214ENST00000483925 TMEM106CQ9BVX2 250 aa10.8□□□□□ -0.68
PTCD3-214ENST00000483925 GSE1Q14687 1217 aa10.79□□□□□ -0.68
PTCD3-214ENST00000483925 SCUBE2Q9NQ36 999 aa10.79□□□□□ -0.68
PTCD3-214ENST00000483925 COLQQ9Y215 455 aaPredicted RBP10.78□□□□□ -0.68
PTCD3-214ENST00000483925 PCDHB8Q9UN66 801 aa10.74□□□□□ -0.69
PTCD3-214ENST00000483925 IFNLR1Q8IU57 520 aaPredicted RBP10.71□□□□□ -0.69
PTCD3-214ENST00000483925 CHRM1P11229 460 aaPredicted RBP10.7□□□□□ -0.7
PTCD3-214ENST00000483925 ZNF467Q7Z7K2 595 aaPredicted RBP10.7□□□□□ -0.7
PTCD3-214ENST00000483925 SPOCK2Q92563 424 aa10.7□□□□□ -0.7
PTCD3-214ENST00000483925 PLCG2P16885 1265 aa10.68□□□□□ -0.7
PTCD3-214ENST00000483925 IRX5P78411 483 aaPredicted RBP10.66□□□□□ -0.7
PTCD3-214ENST00000483925 POTEMA6NI47 508 aa10.64□□□□□ -0.71
PTCD3-214ENST00000483925 OCEL1Q9H607 264 aa10.64□□□□□ -0.71
PTCD3-214ENST00000483925 CIZ1Q9ULV3 898 aaPredicted RBP10.64□□□□□ -0.71
PTCD3-214ENST00000483925 POTEGQ6S5H5 508 aa10.62□□□□□ -0.71
PTCD3-214ENST00000483925 FAM163AQ96GL9 167 aaPredicted RBP10.62□□□□□ -0.71
PTCD3-214ENST00000483925 PSEN1P49768 467 aa10.59□□□□□ -0.71
PTCD3-214ENST00000483925 GOLGA2Q08379 1002 aa10.59□□□□□ -0.71
PTCD3-214ENST00000483925 MKRN3Q13064 507 aaKnown RBP10.56□□□□□ -0.72
PTCD3-214ENST00000483925 PDAP1Q13442 181 aaKnown RBP10.56□□□□□ -0.72
PTCD3-214ENST00000483925 SLAIN1Q8ND83 568 aa10.56□□□□□ -0.72
PTCD3-214ENST00000483925 LCE2DQ5TA82 110 aaPredicted RBP10.55□□□□□ -0.72
PTCD3-214ENST00000483925 PLSCR2Q9NRY7 297 aa10.54□□□□□ -0.72
PTCD3-214ENST00000483925 PCDH10Q9P2E7 1040 aa10.52□□□□□ -0.73
PTCD3-214ENST00000483925 TRIM41Q8WV44 630 aa10.51□□□□□ -0.73
PTCD3-214ENST00000483925 PDCD7Q8N8D1 485 aaKnown RBP10.5□□□□□ -0.73
PTCD3-214ENST00000483925 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.5□□□□□ -0.731e-9■■■□□ 17
PTCD3-214ENST00000483925 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.5□□□□□ -0.73
PTCD3-214ENST00000483925 L3MBTL3Q96JM7 780 aaPredicted RBP10.48□□□□□ -0.73
PTCD3-214ENST00000483925 CABP2Q9NPB3 220 aa10.45□□□□□ -0.74
PTCD3-214ENST00000483925 ILDR1Q86SU0 546 aaPredicted RBP10.43□□□□□ -0.74
PTCD3-214ENST00000483925 ST18O60284 1047 aa10.42□□□□□ -0.74
PTCD3-214ENST00000483925 C3orf67Q6ZVT6 689 aa10.42□□□□□ -0.74
PTCD3-214ENST00000483925 SNPHO15079 494 aa10.41□□□□□ -0.74
PTCD3-214ENST00000483925 DPY19L2Q6NUT2 758 aa10.37□□□□□ -0.75
PTCD3-214ENST00000483925 G3V3G9 751 aa10.35□□□□□ -0.75
PTCD3-214ENST00000483925 RIOK3O14730 519 aaKnown RBP10.35□□□□□ -0.75
PTCD3-214ENST00000483925 TMEM121BQ9BXQ6 578 aaPredicted RBP10.34□□□□□ -0.75
PTCD3-214ENST00000483925 CDAN1Q8IWY9 1227 aa10.33□□□□□ -0.76
PTCD3-214ENST00000483925 EFCAB3Q8N7B9 438 aa10.33□□□□□ -0.76
PTCD3-214ENST00000483925 BOLA1Q9Y3E2 137 aa10.32□□□□□ -0.76
PTCD3-214ENST00000483925 RNF25Q96BH1 459 aaPredicted RBP10.31□□□□□ -0.76
PTCD3-214ENST00000483925 VGFO15240 615 aaPredicted RBP10.3□□□□□ -0.76
PTCD3-214ENST00000483925 SLC24A1O60721 1099 aa10.3□□□□□ -0.76
PTCD3-214ENST00000483925 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.28□□□□□ -0.76
PTCD3-214ENST00000483925 ZFP91Q96JP5 570 aaPredicted RBP10.28□□□□□ -0.76
PTCD3-214ENST00000483925 SOX12O15370 315 aa10.26□□□□□ -0.77
PTCD3-214ENST00000483925 MARVELD3Q96A59 401 aa10.24□□□□□ -0.77
PTCD3-214ENST00000483925 TAOK2Q9UL54 1235 aa10.24□□□□□ -0.77
PTCD3-214ENST00000483925 EMP3P54852 163 aa10.19□□□□□ -0.78
PTCD3-214ENST00000483925 PHF8Q9UPP1 1060 aa10.19□□□□□ -0.78
PTCD3-214ENST00000483925 MICALL2Q8IY33 904 aa10.18□□□□□ -0.78
PTCD3-214ENST00000483925 ECM2O94769 699 aaPredicted RBP10.17□□□□□ -0.78
PTCD3-214ENST00000483925 MS4A4AQ96JQ5 239 aa10.17□□□□□ -0.78
PTCD3-214ENST00000483925 BCL11BQ9C0K0 894 aaPredicted RBP10.17□□□□□ -0.78
PTCD3-214ENST00000483925 HOXB3P14651 431 aaPredicted RBP10.16□□□□□ -0.78
PTCD3-214ENST00000483925 STK24Q9Y6E0 443 aa10.15□□□□□ -0.78
PTCD3-214ENST00000483925 NLRP6P59044 892 aa10.14□□□□□ -0.79
PTCD3-214ENST00000483925 DOK7Q18PE1 504 aa10.14□□□□□ -0.79
PTCD3-214ENST00000483925 ZNF710Q8N1W2 664 aa10.14□□□□□ -0.79
PTCD3-214ENST00000483925 FAM205CA6NFA0 338 aa10.12□□□□□ -0.79
PTCD3-214ENST00000483925 STK25O00506 426 aa10.12□□□□□ -0.79
PTCD3-214ENST00000483925 PKD2Q13563 968 aa10.12□□□□□ -0.79
PTCD3-214ENST00000483925 HS3ST6Q96QI5 342 aa10.11□□□□□ -0.79
PTCD3-214ENST00000483925 TMEM92Q6UXU6 159 aa10.1□□□□□ -0.79
PTCD3-214ENST00000483925 FBXO22Q8NEZ5 403 aa10.1□□□□□ -0.79
PTCD3-214ENST00000483925 RIMBP2O15034 1052 aa10.09□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms