RNA–Protein interactions for RNA: ENST00000482558.5

SNX13-208, Transcript of sorting nexin 13, humanhuman

TSL 2

Gene SNX13, Length 1,139 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX13-208ENST00000482558 SLC39A7Q92504 469 aa15.55■□□□□ 0.08
SNX13-208ENST00000482558 C7P10643 843 aa15.54■□□□□ 0.08
SNX13-208ENST00000482558 CCDC61Q9Y6R9 512 aa15.53■□□□□ 0.08
SNX13-208ENST00000482558 TSPYL2Q9H2G4 693 aaPredicted RBP15.52■□□□□ 0.08
SNX13-208ENST00000482558 METRNQ9UJH8 293 aa15.52■□□□□ 0.08
SNX13-208ENST00000482558 PLEKHG5O94827 1062 aa15.49■□□□□ 0.07
SNX13-208ENST00000482558 KIF12Q96FN5 646 aa15.45■□□□□ 0.06
SNX13-208ENST00000482558 MAMSTRQ6ZN01 415 aa15.43■□□□□ 0.06
SNX13-208ENST00000482558 SLC24A1O60721 1099 aa15.41■□□□□ 0.06
SNX13-208ENST00000482558 PLSCR2Q9NRY7 297 aa15.41■□□□□ 0.06
SNX13-208ENST00000482558 MIER1Q8N108 512 aa15.4■□□□□ 0.06
SNX13-208ENST00000482558 ATN1P54259 1190 aaPredicted RBP15.38■□□□□ 0.05
SNX13-208ENST00000482558 POTEJP0CG39 1038 aa15.36■□□□□ 0.05
SNX13-208ENST00000482558 POTEMA6NI47 508 aa15.35■□□□□ 0.05
SNX13-208ENST00000482558 TIE1P35590 1138 aa15.33■□□□□ 0.04
SNX13-208ENST00000482558 RASEFQ8IZ41 740 aa15.33■□□□□ 0.04
SNX13-208ENST00000482558 BMP2KQ9NSY1 1161 aaPredicted RBP15.33■□□□□ 0.04
SNX13-208ENST00000482558 MAP3K13O43283 966 aa15.31■□□□□ 0.04
SNX13-208ENST00000482558 POTEGQ6S5H5 508 aa15.3■□□□□ 0.04
SNX13-208ENST00000482558 SCUBE2Q9NQ36 999 aa15.28■□□□□ 0.04
SNX13-208ENST00000482558 ZBTB47Q9UFB7 747 aaPredicted RBP15.26■□□□□ 0.03
SNX13-208ENST00000482558 PLCD3Q8N3E9 789 aa15.25■□□□□ 0.03
SNX13-208ENST00000482558 SGIP1Q9BQI5 828 aa15.25■□□□□ 0.03
SNX13-208ENST00000482558 TRPC6Q9Y210 931 aa15.25■□□□□ 0.03
SNX13-208ENST00000482558 PCDH10Q9P2E7 1040 aa15.24■□□□□ 0.03
SNX13-208ENST00000482558 POTEFA5A3E0 1075 aa15.22■□□□□ 0.03
SNX13-208ENST00000482558 TTLL13PA6NNM8 815 aa15.19■□□□□ 0.02
SNX13-208ENST00000482558 NUBP1P53384 320 aa15.15■□□□□ 0.02
SNX13-208ENST00000482558 IER5LQ5T953 404 aa15.15■□□□□ 0.02
SNX13-208ENST00000482558 PCDHB13Q9Y5F0 798 aa15.13■□□□□ 0.01
SNX13-208ENST00000482558 SEC24BO95487 1268 aa15.12■□□□□ 0.01
SNX13-208ENST00000482558 LCE2DQ5TA82 110 aaPredicted RBP15.11■□□□□ 0.01
SNX13-208ENST00000482558 COLQQ9Y215 455 aaPredicted RBP15.1■□□□□ 0.01
SNX13-208ENST00000482558 FAM212AQ96EL1 285 aa15.08■□□□□ 0
SNX13-208ENST00000482558 FAM163AQ96GL9 167 aaPredicted RBP15.08■□□□□ 0
SNX13-208ENST00000482558 TRIM35Q9UPQ4 493 aa15.08■□□□□ 0
SNX13-208ENST00000482558 IFNL1Q8IU54 200 aa15.03■□□□□ -0
SNX13-208ENST00000482558 FKBP8Q14318 412 aa14.99□□□□□ -0.01
SNX13-208ENST00000482558 TMEM106CQ9BVX2 250 aa14.97□□□□□ -0.01
SNX13-208ENST00000482558 PLCG2P16885 1265 aa14.9□□□□□ -0.02
SNX13-208ENST00000482558 FBXO3Q9UK99 471 aa14.88□□□□□ -0.03
SNX13-208ENST00000482558 IRX5P78411 483 aaPredicted RBP14.87□□□□□ -0.03
SNX13-208ENST00000482558 SLAIN1Q8ND83 568 aa14.86□□□□□ -0.03
SNX13-208ENST00000482558 DCAF8Q5TAQ9 597 aa14.85□□□□□ -0.03
SNX13-208ENST00000482558 OCEL1Q9H607 264 aa14.81□□□□□ -0.04
SNX13-208ENST00000482558 PYGBP11216 843 aa14.8□□□□□ -0.04
SNX13-208ENST00000482558 CDAN1Q8IWY9 1227 aa14.76□□□□□ -0.05
SNX13-208ENST00000482558 ST18O60284 1047 aa14.75□□□□□ -0.05
SNX13-208ENST00000482558 PCDHB8Q9UN66 801 aa14.73□□□□□ -0.05
SNX13-208ENST00000482558 GSE1Q14687 1217 aa14.71□□□□□ -0.05
SNX13-208ENST00000482558 ZNF467Q7Z7K2 595 aaPredicted RBP14.69□□□□□ -0.06
SNX13-208ENST00000482558 TMEM121BQ9BXQ6 578 aaPredicted RBP14.69□□□□□ -0.06
SNX13-208ENST00000482558 SNPHO15079 494 aa14.68□□□□□ -0.06
SNX13-208ENST00000482558 EIF2AK3Q9NZJ5 1116 aaKnown RBP14.68□□□□□ -0.06
SNX13-208ENST00000482558 CHRM1P11229 460 aaPredicted RBP14.65□□□□□ -0.06
SNX13-208ENST00000482558 VASPP50552 380 aaPredicted RBP14.65□□□□□ -0.06
SNX13-208ENST00000482558 KLHL34Q8N239 644 aa14.64□□□□□ -0.07
SNX13-208ENST00000482558 PDCD7Q8N8D1 485 aaKnown RBP14.6□□□□□ -0.07
SNX13-208ENST00000482558 GOLGA2Q08379 1002 aa14.58□□□□□ -0.08
SNX13-208ENST00000482558 MKRN3Q13064 507 aaKnown RBP14.57□□□□□ -0.08
SNX13-208ENST00000482558 L3MBTL3Q96JM7 780 aaPredicted RBP14.57□□□□□ -0.08
SNX13-208ENST00000482558 C3orf67Q6ZVT6 689 aa14.53□□□□□ -0.08
SNX13-208ENST00000482558 PSEN1P49768 467 aa14.52□□□□□ -0.09
SNX13-208ENST00000482558 AMER1Q5JTC6 1135 aaPredicted RBP14.5□□□□□ -0.09
SNX13-208ENST00000482558 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.49□□□□□ -0.092e-6■■■■□ 22.9
SNX13-208ENST00000482558 ILDR1Q86SU0 546 aaPredicted RBP14.48□□□□□ -0.09
SNX13-208ENST00000482558 PDAP1Q13442 181 aaKnown RBP14.46□□□□□ -0.09
SNX13-208ENST00000482558 RTN4Q9NQC3 1192 aaKnown RBP14.46□□□□□ -0.09
SNX13-208ENST00000482558 MARVELD3Q96A59 401 aa14.44□□□□□ -0.1
SNX13-208ENST00000482558 SPNS2Q8IVW8 549 aa14.42□□□□□ -0.1
SNX13-208ENST00000482558 MMRN1Q13201 1228 aa14.4□□□□□ -0.1
SNX13-208ENST00000482558 SPOCK2Q92563 424 aa14.4□□□□□ -0.1
SNX13-208ENST00000482558 EMP3P54852 163 aa14.36□□□□□ -0.11
SNX13-208ENST00000482558 IFNLR1Q8IU57 520 aaPredicted RBP14.34□□□□□ -0.11
SNX13-208ENST00000482558 CIZ1Q9ULV3 898 aaPredicted RBP14.32□□□□□ -0.12
SNX13-208ENST00000482558 CABP2Q9NPB3 220 aa14.31□□□□□ -0.12
SNX13-208ENST00000482558 G3V3G9 751 aa14.29□□□□□ -0.12
SNX13-208ENST00000482558 DPY19L2Q6NUT2 758 aa14.29□□□□□ -0.12
SNX13-208ENST00000482558 BOLA1Q9Y3E2 137 aa14.29□□□□□ -0.12
SNX13-208ENST00000482558 HS3ST6Q96QI5 342 aa14.26□□□□□ -0.13
SNX13-208ENST00000482558 TRIM41Q8WV44 630 aa14.25□□□□□ -0.13
SNX13-208ENST00000482558 FAM205CA6NFA0 338 aa14.23□□□□□ -0.13
SNX13-208ENST00000482558 POTEB3A0JP26 581 aa14.22□□□□□ -0.13
SNX13-208ENST00000482558 POTEBQ6S5H4 581 aa14.22□□□□□ -0.13
SNX13-208ENST00000482558 KRTAP3-3Q9BYR6 98 aa14.22□□□□□ -0.13
SNX13-208ENST00000482558 KRTAP3-2Q9BYR7 98 aa14.22□□□□□ -0.13
SNX13-208ENST00000482558 HOXB3P14651 431 aaPredicted RBP14.2□□□□□ -0.14
SNX13-208ENST00000482558 HOXB1P14653 301 aaPredicted RBP14.16□□□□□ -0.14
SNX13-208ENST00000482558 DOK7Q18PE1 504 aa14.15□□□□□ -0.14
SNX13-208ENST00000482558 ZNF710Q8N1W2 664 aa14.13□□□□□ -0.15
SNX13-208ENST00000482558 EFCAB3Q8N7B9 438 aa14.11□□□□□ -0.15
SNX13-208ENST00000482558 CCDC180Q9P1Z9 1646 aa14.1□□□□□ -0.15
SNX13-208ENST00000482558 RIMBP2O15034 1052 aa14.08□□□□□ -0.16
SNX13-208ENST00000482558 SOX12O15370 315 aa14.04□□□□□ -0.16
SNX13-208ENST00000482558 ERBB3P21860 1342 aa14.04□□□□□ -0.16
SNX13-208ENST00000482558 MICALL2Q8IY33 904 aa14.03□□□□□ -0.16
SNX13-208ENST00000482558 ZSWIM6Q9HCJ5 1215 aa14.03□□□□□ -0.16
SNX13-208ENST00000482558 RIOK3O14730 519 aaKnown RBP14□□□□□ -0.17
SNX13-208ENST00000482558 TMEM92Q6UXU6 159 aa13.96□□□□□ -0.17
SNX13-208ENST00000482558 VGFO15240 615 aaPredicted RBP13.95□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 107.1 ms