RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 ANP32AP39687 249 aaKnown RBP18.67■□□□□ 0.58
USP42-206ENST00000479544 SALL2Q9Y467 1007 aaPredicted RBP18.66■□□□□ 0.58
USP42-206ENST00000479544 ARID3CA6NKF2 412 aa18.65■□□□□ 0.58
USP42-206ENST00000479544 FBLN2P98095 1184 aa18.65■□□□□ 0.58
USP42-206ENST00000479544 SIN3AQ96ST3 1273 aa18.63■□□□□ 0.57
USP42-206ENST00000479544 CLIP1P30622 1438 aa18.63■□□□□ 0.57
USP42-206ENST00000479544 RTN4Q9NQC3 1192 aaKnown RBP18.6■□□□□ 0.57
USP42-206ENST00000479544 FANCD2Q9BXW9 1451 aa18.57■□□□□ 0.56
USP42-206ENST00000479544 TONSLQ96HA7 1378 aa18.56■□□□□ 0.56
USP42-206ENST00000479544 SOGA1O94964 1423 aa18.55■□□□□ 0.56
USP42-206ENST00000479544 TNIKQ9UKE5 1360 aa18.55■□□□□ 0.56
USP42-206ENST00000479544 PEG3Q9GZU2 1588 aa18.55■□□□□ 0.56
USP42-206ENST00000479544 CCDC136Q96JN2 1154 aa18.54■□□□□ 0.56
USP42-206ENST00000479544 MRS2Q9HD23 443 aa18.52■□□□□ 0.55
USP42-206ENST00000479544 ZBTB47Q9UFB7 747 aaPredicted RBP18.52■□□□□ 0.55
USP42-206ENST00000479544 B4GALNT3Q6L9W6 998 aa18.5■□□□□ 0.55
USP42-206ENST00000479544 TRHP20396 242 aaPredicted RBP18.49■□□□□ 0.55
USP42-206ENST00000479544 CHIC2Q9UKJ5 165 aa18.49■□□□□ 0.55
USP42-206ENST00000479544 GOLGA3Q08378 1498 aa18.48■□□□□ 0.55
USP42-206ENST00000479544 WRNQ14191 1432 aaPredicted RBP eCLIP18.48■□□□□ 0.55
USP42-206ENST00000479544 EEA1Q15075 1411 aa18.45■□□□□ 0.54
USP42-206ENST00000479544 CCDC88BA6NC98 1476 aa18.43■□□□□ 0.54
USP42-206ENST00000479544 DEKP35659 375 aaKnown RBP18.42■□□□□ 0.54
USP42-206ENST00000479544 ABCC8Q09428 1581 aa18.42■□□□□ 0.54
USP42-206ENST00000479544 ARXQ96QS3 562 aa18.41■□□□□ 0.54
USP42-206ENST00000479544 WIZO95785 1651 aa18.4■□□□□ 0.54
USP42-206ENST00000479544 KANK4Q5T7N3 995 aaPredicted RBP18.39■□□□□ 0.53
USP42-206ENST00000479544 CHMP7Q8WUX9 453 aaPredicted RBP18.37■□□□□ 0.53
USP42-206ENST00000479544 THOC2Q8NI27 1593 aaKnown RBP18.37■□□□□ 0.53
USP42-206ENST00000479544 CFTRP13569 1480 aa18.37■□□□□ 0.53
USP42-206ENST00000479544 LAS1LQ9Y4W2 734 aaKnown RBP18.35■□□□□ 0.53
USP42-206ENST00000479544 SLC4A1APQ9BWU0 796 aaKnown RBP18.35■□□□□ 0.53
USP42-206ENST00000479544 TOP2AP11388 1531 aaKnown RBP18.35■□□□□ 0.53
USP42-206ENST00000479544 KIF21AQ7Z4S6 1674 aa18.34■□□□□ 0.53
USP42-206ENST00000479544 CYB5RLQ6IPT4 315 aa18.34■□□□□ 0.53
USP42-206ENST00000479544 MYT1LQ9UL68 1186 aa18.33■□□□□ 0.53
USP42-206ENST00000479544 WDR62O43379 1518 aa18.31■□□□□ 0.52
USP42-206ENST00000479544 TMC1Q8TDI8 760 aa18.29■□□□□ 0.52
USP42-206ENST00000479544 RRP7BPQ9NSQ0 103 aa18.29■□□□□ 0.52
USP42-206ENST00000479544 NOP58Q9Y2X3 529 aaKnown RBP18.29■□□□□ 0.52
USP42-206ENST00000479544 IFT140Q96RY7 1462 aa18.28■□□□□ 0.52
USP42-206ENST00000479544 PPP4R2Q9NY27 417 aa18.27■□□□□ 0.52
USP42-206ENST00000479544 EIF4G2P78344 907 aaKnown RBP eCLIP18.23■□□□□ 0.51
USP42-206ENST00000479544 ZNF777Q9ULD5 760 aaPredicted RBP18.23■□□□□ 0.51
USP42-206ENST00000479544 AEBP2Q6ZN18 517 aaPredicted RBP18.22■□□□□ 0.51
USP42-206ENST00000479544 ZBTB4Q9P1Z0 1013 aaPredicted RBP18.21■□□□□ 0.51
USP42-206ENST00000479544 RUSC2Q8N2Y8 1516 aa18.2■□□□□ 0.5
USP42-206ENST00000479544 NEFMP07197 916 aa18.19■□□□□ 0.5
USP42-206ENST00000479544 KDM2AQ9Y2K7 1162 aa18.16■□□□□ 0.5
USP42-206ENST00000479544 CCNB3Q8WWL7 1395 aa18.16■□□□□ 0.5
USP42-206ENST00000479544 VPS8Q8N3P4 1428 aa18.14■□□□□ 0.49
USP42-206ENST00000479544 CANXP27824 592 aaKnown RBP18.14■□□□□ 0.49
USP42-206ENST00000479544 URB2Q14146 1524 aaKnown RBP18.13■□□□□ 0.49
USP42-206ENST00000479544 DHX57Q6P158 1386 aaKnown RBP18.13■□□□□ 0.49
USP42-206ENST00000479544 CCER2I3L3R5 266 aa18.11■□□□□ 0.49
USP42-206ENST00000479544 NPM1P06748 294 aaKnown RBP eCLIP18.1■□□□□ 0.49
USP42-206ENST00000479544 KIF27Q86VH2 1401 aa18.09■□□□□ 0.49
USP42-206ENST00000479544 RAB3GAP2Q9H2M9 1393 aa18.09■□□□□ 0.49
USP42-206ENST00000479544 MTUS2Q5JR59 1369 aa18.08■□□□□ 0.48
USP42-206ENST00000479544 TDRD9Q8NDG6 1382 aaKnown RBP18.08■□□□□ 0.48
USP42-206ENST00000479544 TOPBP1Q92547 1522 aa18.08■□□□□ 0.48
USP42-206ENST00000479544 AQRO60306 1485 aaKnown RBP eCLIP18.03■□□□□ 0.483e-6■■■□□ 17.1
USP42-206ENST00000479544 FOXD1Q16676 465 aa18.03■□□□□ 0.48
USP42-206ENST00000479544 PPP1R15AO75807 674 aaPredicted RBP18.02■□□□□ 0.48
USP42-206ENST00000479544 HSPA5P11021 654 aaKnown RBP18.02■□□□□ 0.48
USP42-206ENST00000479544 ZNF608Q9ULD9 1512 aaPredicted RBP17.99■□□□□ 0.47
USP42-206ENST00000479544 DNMBPQ6XZF7 1577 aa17.98■□□□□ 0.47
USP42-206ENST00000479544 RAPGEF2Q9Y4G8 1499 aa17.98■□□□□ 0.47
USP42-206ENST00000479544 RGS3P49796 1198 aa17.97■□□□□ 0.47
USP42-206ENST00000479544 SETD5Q9C0A6 1442 aa17.94■□□□□ 0.46
USP42-206ENST00000479544 MSH5O43196 834 aa17.92■□□□□ 0.46
USP42-206ENST00000479544 PPM1GO15355 546 aaPredicted RBP17.9■□□□□ 0.46
USP42-206ENST00000479544 ANO8Q9HCE9 1232 aaPredicted RBP17.9■□□□□ 0.46
USP42-206ENST00000479544 GRIN2BQ13224 1484 aa17.89■□□□□ 0.45
USP42-206ENST00000479544 IPO9Q96P70 1041 aaKnown RBP17.89■□□□□ 0.45
USP42-206ENST00000479544 CARMIL1Q5VZK9 1371 aa17.88■□□□□ 0.45
USP42-206ENST00000479544 RGL3Q3MIN7 710 aa17.88■□□□□ 0.45
USP42-206ENST00000479544 ARHGEF11O15085 1522 aa17.88■□□□□ 0.45
USP42-206ENST00000479544 POLA1P09884 1462 aaPredicted RBP17.88■□□□□ 0.45
USP42-206ENST00000479544 RAD54L2Q9Y4B4 1467 aa17.88■□□□□ 0.45
USP42-206ENST00000479544 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.87■□□□□ 0.45
USP42-206ENST00000479544 FANCIQ9NVI1 1328 aa17.87■□□□□ 0.45
USP42-206ENST00000479544 SLC4A3P48751 1232 aa17.86■□□□□ 0.45
USP42-206ENST00000479544 PAK3O75914 559 aaPredicted RBP17.85■□□□□ 0.45
USP42-206ENST00000479544 FGD5Q6ZNL6 1462 aa17.85■□□□□ 0.45
USP42-206ENST00000479544 HSP90AA1P07900 732 aaKnown RBP17.84■□□□□ 0.45
USP42-206ENST00000479544 UPF2Q9HAU5 1272 aaKnown RBP17.84■□□□□ 0.45
USP42-206ENST00000479544 SNAPC4Q5SXM2 1469 aa17.83■□□□□ 0.45
USP42-206ENST00000479544 DDRGK1Q96HY6 314 aa17.83■□□□□ 0.45
USP42-206ENST00000479544 TIMELESSQ9UNS1 1208 aa17.82■□□□□ 0.44
USP42-206ENST00000479544 WDR43Q15061 677 aaKnown RBP eCLIP17.82■□□□□ 0.44
USP42-206ENST00000479544 ARID4BQ4LE39 1312 aaPredicted RBP17.81■□□□□ 0.44
USP42-206ENST00000479544 SYNJ1O43426 1573 aa17.81■□□□□ 0.44
USP42-206ENST00000479544 GLIPR1L2Q4G1C9 344 aa17.81■□□□□ 0.44
USP42-206ENST00000479544 CARD11Q9BXL7 1154 aa17.8■□□□□ 0.44
USP42-206ENST00000479544 GAPVD1Q14C86 1478 aa17.8■□□□□ 0.44
USP42-206ENST00000479544 MAGI1Q96QZ7 1491 aaPredicted RBP17.8■□□□□ 0.44
USP42-206ENST00000479544 CC2D1BQ5T0F9 858 aaKnown RBP17.79■□□□□ 0.44
USP42-206ENST00000479544 EIF4G3O43432 1585 aaKnown RBP17.79■□□□□ 0.44
USP42-206ENST00000479544 IL27Q8NEV9 243 aa17.78■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms