RNA–Protein interactions for RNA: ENST00000468925.1

SF3B1-207, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 510 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-207ENST00000468925 PHF12Q96QT6 1004 aa9.36□□□□□ -0.91
SF3B1-207ENST00000468925 SLC39A7Q92504 469 aa9.34□□□□□ -0.91
SF3B1-207ENST00000468925 C7P10643 843 aa9.33□□□□□ -0.92
SF3B1-207ENST00000468925 CREBZFQ9NS37 354 aa9.32□□□□□ -0.92
SF3B1-207ENST00000468925 ATMINO43313 823 aaPredicted RBP9.31□□□□□ -0.92
SF3B1-207ENST00000468925 SCUBE2Q9NQ36 999 aa9.29□□□□□ -0.92
SF3B1-207ENST00000468925 MMRN1Q13201 1228 aa9.25□□□□□ -0.93
SF3B1-207ENST00000468925 STAG3Q9UJ98 1225 aa9.24□□□□□ -0.93
SF3B1-207ENST00000468925 MS4A3Q96HJ5 214 aa9.23□□□□□ -0.93
SF3B1-207ENST00000468925 POTEFA5A3E0 1075 aa9.22□□□□□ -0.93
SF3B1-207ENST00000468925 PAK3O75914 559 aaPredicted RBP9.22□□□□□ -0.93
SF3B1-207ENST00000468925 SPNS2Q8IVW8 549 aa9.19□□□□□ -0.94
SF3B1-207ENST00000468925 ATN1P54259 1190 aaPredicted RBP9.16□□□□□ -0.94
SF3B1-207ENST00000468925 FKBP8Q14318 412 aa9.11□□□□□ -0.95
SF3B1-207ENST00000468925 ST18O60284 1047 aa9.1□□□□□ -0.95
SF3B1-207ENST00000468925 PROM2Q8N271 834 aa9.1□□□□□ -0.95
SF3B1-207ENST00000468925 MNX1P50219 401 aaPredicted RBP9.09□□□□□ -0.95
SF3B1-207ENST00000468925 NPM1P06748 294 aaKnown RBP eCLIP9.03□□□□□ -0.96
SF3B1-207ENST00000468925 MIER1Q8N108 512 aa9.02□□□□□ -0.97
SF3B1-207ENST00000468925 BMP2KQ9NSY1 1161 aaPredicted RBP9.02□□□□□ -0.97
SF3B1-207ENST00000468925 COLQQ9Y215 455 aaPredicted RBP9.02□□□□□ -0.97
SF3B1-207ENST00000468925 TSPYL2Q9H2G4 693 aaPredicted RBP9□□□□□ -0.97
SF3B1-207ENST00000468925 TRPC6Q9Y210 931 aa8.98□□□□□ -0.97
SF3B1-207ENST00000468925 PLCD3Q8N3E9 789 aa8.97□□□□□ -0.97
SF3B1-207ENST00000468925 PLEKHG5O94827 1062 aa8.95□□□□□ -0.98
SF3B1-207ENST00000468925 SLAIN1Q8ND83 568 aa8.94□□□□□ -0.98
SF3B1-207ENST00000468925 CCDC61Q9Y6R9 512 aa8.94□□□□□ -0.98
SF3B1-207ENST00000468925 SLC24A1O60721 1099 aa8.93□□□□□ -0.98
SF3B1-207ENST00000468925 TIE1P35590 1138 aa8.92□□□□□ -0.98
SF3B1-207ENST00000468925 KIF12Q96FN5 646 aa8.92□□□□□ -0.98
SF3B1-207ENST00000468925 TMEM121BQ9BXQ6 578 aaPredicted RBP8.92□□□□□ -0.98
SF3B1-207ENST00000468925 SEC24BO95487 1268 aa8.89□□□□□ -0.99
SF3B1-207ENST00000468925 RASEFQ8IZ41 740 aa8.88□□□□□ -0.99
SF3B1-207ENST00000468925 TTLL13PA6NNM8 815 aa8.86□□□□□ -0.99
SF3B1-207ENST00000468925 MARVELD3Q96A59 401 aa8.84□□□□□ -0.99
SF3B1-207ENST00000468925 KRTAP3-3Q9BYR6 98 aa8.84□□□□□ -0.99
SF3B1-207ENST00000468925 KRTAP3-2Q9BYR7 98 aa8.84□□□□□ -0.99
SF3B1-207ENST00000468925 IER5LQ5T953 404 aa8.83□□□□□ -1
SF3B1-207ENST00000468925 MAP3K13O43283 966 aa8.81□□□□□ -1
SF3B1-207ENST00000468925 TRIM35Q9UPQ4 493 aa8.8□□□□□ -1
SF3B1-207ENST00000468925 NUBP1P53384 320 aa8.77□□□□□ -1.01
SF3B1-207ENST00000468925 ZBTB47Q9UFB7 747 aaPredicted RBP8.77□□□□□ -1.01
SF3B1-207ENST00000468925 FBXO3Q9UK99 471 aa8.77□□□□□ -1.01
SF3B1-207ENST00000468925 POTEB3A0JP26 581 aa8.75□□□□□ -1.01
SF3B1-207ENST00000468925 POTEBQ6S5H4 581 aa8.75□□□□□ -1.01
SF3B1-207ENST00000468925 KLHL34Q8N239 644 aa8.75□□□□□ -1.01
SF3B1-207ENST00000468925 VASPP50552 380 aaPredicted RBP8.73□□□□□ -1.01
SF3B1-207ENST00000468925 FAM212AQ96EL1 285 aa8.73□□□□□ -1.01
SF3B1-207ENST00000468925 SNPHO15079 494 aa8.72□□□□□ -1.01
SF3B1-207ENST00000468925 DCAF8Q5TAQ9 597 aa8.72□□□□□ -1.01
SF3B1-207ENST00000468925 PCDHB13Q9Y5F0 798 aa8.71□□□□□ -1.02
SF3B1-207ENST00000468925 HS3ST6Q96QI5 342 aa8.7□□□□□ -1.02
SF3B1-207ENST00000468925 PYGBP11216 843 aa8.68□□□□□ -1.02
SF3B1-207ENST00000468925 IRX5P78411 483 aaPredicted RBP8.68□□□□□ -1.02
SF3B1-207ENST00000468925 EMP3P54852 163 aa8.67□□□□□ -1.02
SF3B1-207ENST00000468925 PLCG2P16885 1265 aa8.66□□□□□ -1.02
SF3B1-207ENST00000468925 IFNL1Q8IU54 200 aa8.65□□□□□ -1.02
SF3B1-207ENST00000468925 SGIP1Q9BQI5 828 aa8.63□□□□□ -1.03
SF3B1-207ENST00000468925 FAM205CA6NFA0 338 aa8.62□□□□□ -1.03
SF3B1-207ENST00000468925 PCDHB8Q9UN66 801 aa8.61□□□□□ -1.03
SF3B1-207ENST00000468925 TMEM106CQ9BVX2 250 aa8.6□□□□□ -1.03
SF3B1-207ENST00000468925 EIF2AK3Q9NZJ5 1116 aaKnown RBP8.6□□□□□ -1.03
SF3B1-207ENST00000468925 IFNLR1Q8IU57 520 aaPredicted RBP8.59□□□□□ -1.03
SF3B1-207ENST00000468925 RNF166Q96A37 237 aaPredicted RBP8.58□□□□□ -1.04
SF3B1-207ENST00000468925 CIZ1Q9ULV3 898 aaPredicted RBP8.56□□□□□ -1.04
SF3B1-207ENST00000468925 OCEL1Q9H607 264 aa8.55□□□□□ -1.04
SF3B1-207ENST00000468925 GSE1Q14687 1217 aa8.54□□□□□ -1.04
SF3B1-207ENST00000468925 SPOCK2Q92563 424 aa8.53□□□□□ -1.04
SF3B1-207ENST00000468925 MYT1Q01538 1121 aa8.51□□□□□ -1.05
SF3B1-207ENST00000468925 ZNF467Q7Z7K2 595 aaPredicted RBP8.45□□□□□ -1.06
SF3B1-207ENST00000468925 MYT1LQ9UL68 1186 aa8.45□□□□□ -1.06
SF3B1-207ENST00000468925 PSEN1P49768 467 aa8.43□□□□□ -1.06
SF3B1-207ENST00000468925 GOLGA2Q08379 1002 aa8.42□□□□□ -1.06
SF3B1-207ENST00000468925 PDCD7Q8N8D1 485 aaKnown RBP8.41□□□□□ -1.06
SF3B1-207ENST00000468925 C3orf67Q6ZVT6 689 aa8.4□□□□□ -1.06
SF3B1-207ENST00000468925 CHRM1P11229 460 aaPredicted RBP8.39□□□□□ -1.07
SF3B1-207ENST00000468925 MKRN3Q13064 507 aaKnown RBP8.39□□□□□ -1.07
SF3B1-207ENST00000468925 HOXB3P14651 431 aaPredicted RBP8.37□□□□□ -1.07
SF3B1-207ENST00000468925 PDAP1Q13442 181 aaKnown RBP8.37□□□□□ -1.07
SF3B1-207ENST00000468925 CABP2Q9NPB3 220 aa8.37□□□□□ -1.07
SF3B1-207ENST00000468925 HOXB1P14653 301 aaPredicted RBP8.35□□□□□ -1.07
SF3B1-207ENST00000468925 RTN4Q9NQC3 1192 aaKnown RBP8.35□□□□□ -1.07
SF3B1-207ENST00000468925 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP8.35□□□□□ -1.073e-20■■■■□ 20.7
SF3B1-207ENST00000468925 L3MBTL3Q96JM7 780 aaPredicted RBP8.32□□□□□ -1.08
SF3B1-207ENST00000468925 ERBB3P21860 1342 aa8.31□□□□□ -1.08
SF3B1-207ENST00000468925 DPY19L2Q6NUT2 758 aa8.31□□□□□ -1.08
SF3B1-207ENST00000468925 PTGER2P43116 358 aa8.29□□□□□ -1.08
SF3B1-207ENST00000468925 AMER1Q5JTC6 1135 aaPredicted RBP8.29□□□□□ -1.08
SF3B1-207ENST00000468925 RNF25Q96BH1 459 aaPredicted RBP8.29□□□□□ -1.08
SF3B1-207ENST00000468925 TRIM41Q8WV44 630 aa8.27□□□□□ -1.09
SF3B1-207ENST00000468925 VARS2Q5ST30 1063 aaKnown RBP8.26□□□□□ -1.09
SF3B1-207ENST00000468925 EFCAB3Q8N7B9 438 aa8.26□□□□□ -1.09
SF3B1-207ENST00000468925 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP8.25□□□□□ -1.09
SF3B1-207ENST00000468925 RIOK3O14730 519 aaKnown RBP8.25□□□□□ -1.09
SF3B1-207ENST00000468925 ZNF687Q8N1G0 1237 aa8.25□□□□□ -1.09
SF3B1-207ENST00000468925 ZFP91Q96JP5 570 aaPredicted RBP8.25□□□□□ -1.09
SF3B1-207ENST00000468925 PLA2G2EQ9NZK7 142 aa8.23□□□□□ -1.09
SF3B1-207ENST00000468925 G3V3G9 751 aa8.22□□□□□ -1.09
SF3B1-207ENST00000468925 ZNF710Q8N1W2 664 aa8.22□□□□□ -1.09
SF3B1-207ENST00000468925 ILDR1Q86SU0 546 aaPredicted RBP8.21□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms