RNA–Protein interactions for RNA: ENST00000459727.5

HDAC3-202, Transcript of histone deacetylase 3, humanhuman

TSL 5

Gene HDAC3, Length 524 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-202ENST00000459727 DHX57Q6P158 1386 aaKnown RBP13□□□□□ -0.33
HDAC3-202ENST00000459727 RANGAP1P46060 587 aaPredicted RBP13□□□□□ -0.33
HDAC3-202ENST00000459727 POLA1P09884 1462 aaPredicted RBP12.99□□□□□ -0.33
HDAC3-202ENST00000459727 LRRC9Q6ZRR7 1453 aa12.98□□□□□ -0.33
HDAC3-202ENST00000459727 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.98□□□□□ -0.33
HDAC3-202ENST00000459727 PDS5BQ9NTI5 1447 aa12.96□□□□□ -0.33
HDAC3-202ENST00000459727 CTTNBP2Q8WZ74 1663 aa12.96□□□□□ -0.33
HDAC3-202ENST00000459727 WDR97A6NE52 1622 aa12.96□□□□□ -0.33
HDAC3-202ENST00000459727 KANK4Q5T7N3 995 aaPredicted RBP12.96□□□□□ -0.33
HDAC3-202ENST00000459727 FMN1Q68DA7 1419 aa12.96□□□□□ -0.34
HDAC3-202ENST00000459727 CASKIN1Q8WXD9 1431 aa12.95□□□□□ -0.34
HDAC3-202ENST00000459727 THOC2Q8NI27 1593 aaKnown RBP12.94□□□□□ -0.34
HDAC3-202ENST00000459727 SCAF1Q9H7N4 1312 aaKnown RBP12.93□□□□□ -0.34
HDAC3-202ENST00000459727 PCF11O94913 1555 aaKnown RBP12.93□□□□□ -0.34
HDAC3-202ENST00000459727 KIF21AQ7Z4S6 1674 aa12.92□□□□□ -0.34
HDAC3-202ENST00000459727 ABCA5Q8WWZ7 1642 aa12.91□□□□□ -0.34
HDAC3-202ENST00000459727 SETD5Q9C0A6 1442 aa12.88□□□□□ -0.35
HDAC3-202ENST00000459727 TIMELESSQ9UNS1 1208 aa12.88□□□□□ -0.35
HDAC3-202ENST00000459727 RAD54L2Q9Y4B4 1467 aa12.88□□□□□ -0.35
HDAC3-202ENST00000459727 URB2Q14146 1524 aaKnown RBP12.88□□□□□ -0.35
HDAC3-202ENST00000459727 SAMD9Q5K651 1589 aa12.86□□□□□ -0.35
HDAC3-202ENST00000459727 GAPVD1Q14C86 1478 aa12.85□□□□□ -0.35
HDAC3-202ENST00000459727 ERCC6Q03468 1493 aa12.85□□□□□ -0.35
HDAC3-202ENST00000459727 RAB3GAP2Q9H2M9 1393 aa12.84□□□□□ -0.35
HDAC3-202ENST00000459727 NEUROD1Q13562 356 aa12.84□□□□□ -0.35
HDAC3-202ENST00000459727 NESP48681 1621 aa12.84□□□□□ -0.35
HDAC3-202ENST00000459727 PHLDB1Q86UU1 1377 aa12.82□□□□□ -0.36
HDAC3-202ENST00000459727 FHOD3Q2V2M9 1422 aa12.82□□□□□ -0.36
HDAC3-202ENST00000459727 SNAPC4Q5SXM2 1469 aa12.82□□□□□ -0.36
HDAC3-202ENST00000459727 CCDC18Q5T9S5 1454 aa12.82□□□□□ -0.36
HDAC3-202ENST00000459727 EHBP1L1Q8N3D4 1523 aa12.81□□□□□ -0.36
HDAC3-202ENST00000459727 MAPKBP1O60336 1514 aa12.78□□□□□ -0.36
HDAC3-202ENST00000459727 MTUS2Q5JR59 1369 aa12.78□□□□□ -0.36
HDAC3-202ENST00000459727 FGD6Q6ZV73 1430 aa12.78□□□□□ -0.36
HDAC3-202ENST00000459727 GRIN2BQ13224 1484 aa12.77□□□□□ -0.37
HDAC3-202ENST00000459727 TARBP1Q13395 1621 aaKnown RBP12.77□□□□□ -0.37
HDAC3-202ENST00000459727 MIER1Q8N108 512 aa12.76□□□□□ -0.37
HDAC3-202ENST00000459727 SUPT6HQ7KZ85 1726 aaKnown RBP12.76□□□□□ -0.37
HDAC3-202ENST00000459727 HECW1Q76N89 1606 aa12.75□□□□□ -0.37
HDAC3-202ENST00000459727 GTF3C3Q9Y5Q9 886 aa12.75□□□□□ -0.37
HDAC3-202ENST00000459727 MRC2Q9UBG0 1479 aa12.74□□□□□ -0.37
HDAC3-202ENST00000459727 FAM50AQ14320 339 aaKnown RBP12.74□□□□□ -0.37
HDAC3-202ENST00000459727 HFM1A2PYH4 1435 aa12.73□□□□□ -0.37
HDAC3-202ENST00000459727 MYOM3Q5VTT5 1437 aa12.73□□□□□ -0.37
HDAC3-202ENST00000459727 AKNAQ7Z591 1439 aa12.72□□□□□ -0.37
HDAC3-202ENST00000459727 PBRM1Q86U86 1689 aa12.72□□□□□ -0.37
HDAC3-202ENST00000459727 ADAMTS12P58397 1594 aa12.72□□□□□ -0.37
HDAC3-202ENST00000459727 IQGAP2Q13576 1575 aa12.72□□□□□ -0.37
HDAC3-202ENST00000459727 TDRD9Q8NDG6 1382 aaKnown RBP12.71□□□□□ -0.37
HDAC3-202ENST00000459727 ITGAEP38570 1179 aa12.71□□□□□ -0.37
HDAC3-202ENST00000459727 ATP1B4Q9UN42 357 aaPredicted RBP12.7□□□□□ -0.38
HDAC3-202ENST00000459727 NCOA2Q15596 1464 aa12.7□□□□□ -0.38
HDAC3-202ENST00000459727 IFT140Q96RY7 1462 aa12.7□□□□□ -0.38
HDAC3-202ENST00000459727 ARHGEF11O15085 1522 aa12.69□□□□□ -0.38
HDAC3-202ENST00000459727 P3H3Q8IVL6 736 aa12.69□□□□□ -0.38
HDAC3-202ENST00000459727 UACAQ9BZF9 1416 aa12.69□□□□□ -0.38
HDAC3-202ENST00000459727 UGGT2Q9NYU1 1516 aa12.68□□□□□ -0.38
HDAC3-202ENST00000459727 TCOF1Q13428 1488 aaKnown RBP12.68□□□□□ -0.38
HDAC3-202ENST00000459727 MIA2Q96PC5 1412 aa12.67□□□□□ -0.38
HDAC3-202ENST00000459727 PTPN23Q9H3S7 1636 aa12.66□□□□□ -0.38
HDAC3-202ENST00000459727 WDR62O43379 1518 aa12.65□□□□□ -0.38
HDAC3-202ENST00000459727 YTHDC1Q96MU7 727 aaKnown RBP12.63□□□□□ -0.39
HDAC3-202ENST00000459727 GCC2Q8IWJ2 1684 aa12.62□□□□□ -0.39
HDAC3-202ENST00000459727 TONSLQ96HA7 1378 aa12.62□□□□□ -0.39
HDAC3-202ENST00000459727 EPRSP07814 1512 aaKnown RBP12.62□□□□□ -0.39
HDAC3-202ENST00000459727 LRRIQ1Q96JM4 1722 aa12.61□□□□□ -0.39
HDAC3-202ENST00000459727 KIAA0586Q9BVV6 1533 aa12.61□□□□□ -0.39
HDAC3-202ENST00000459727 NAIPQ13075 1403 aa12.61□□□□□ -0.39
HDAC3-202ENST00000459727 PPP1R15AO75807 674 aaPredicted RBP12.57□□□□□ -0.4
HDAC3-202ENST00000459727 MAGI1Q96QZ7 1491 aaPredicted RBP12.57□□□□□ -0.4
HDAC3-202ENST00000459727 ROCK1Q13464 1354 aa12.56□□□□□ -0.4
HDAC3-202ENST00000459727 KIAA0556O60303 1618 aa12.56□□□□□ -0.4
HDAC3-202ENST00000459727 CDK11AQ9UQ88 783 aaPredicted RBP12.55□□□□□ -0.4
HDAC3-202ENST00000459727 GRIN2AQ12879 1464 aa12.53□□□□□ -0.4
HDAC3-202ENST00000459727 MAGI3Q5TCQ9 1506 aa12.53□□□□□ -0.4
HDAC3-202ENST00000459727 CCER2I3L3R5 266 aa12.53□□□□□ -0.4
HDAC3-202ENST00000459727 PTPRKQ15262 1439 aa12.53□□□□□ -0.4
HDAC3-202ENST00000459727 RAPGEF6Q8TEU7 1601 aa12.51□□□□□ -0.41
HDAC3-202ENST00000459727 MYT1Q01538 1121 aa12.51□□□□□ -0.41
HDAC3-202ENST00000459727 EIF4G3O43432 1585 aaKnown RBP12.51□□□□□ -0.41
HDAC3-202ENST00000459727 SIN3AQ96ST3 1273 aa12.5□□□□□ -0.41
HDAC3-202ENST00000459727 ITSN2Q9NZM3 1697 aa12.49□□□□□ -0.41
HDAC3-202ENST00000459727 DISP1Q96F81 1524 aa12.49□□□□□ -0.41
HDAC3-202ENST00000459727 DNMT1P26358 1616 aaKnown RBP12.48□□□□□ -0.41
HDAC3-202ENST00000459727 SYNJ2O15056 1496 aa12.48□□□□□ -0.41
HDAC3-202ENST00000459727 CARMIL2Q6F5E8 1435 aa12.48□□□□□ -0.41
HDAC3-202ENST00000459727 ANP32CO43423 234 aa12.48□□□□□ -0.41
HDAC3-202ENST00000459727 CDK13Q14004 1512 aaKnown RBP12.47□□□□□ -0.41
HDAC3-202ENST00000459727 DAPK1P53355 1430 aa12.46□□□□□ -0.41
HDAC3-202ENST00000459727 ADCY10Q96PN6 1610 aa12.46□□□□□ -0.41
HDAC3-202ENST00000459727 NUP153P49790 1475 aaKnown RBP12.46□□□□□ -0.42
HDAC3-202ENST00000459727 TROQ12816 1431 aaPredicted RBP12.45□□□□□ -0.42
HDAC3-202ENST00000459727 ZNF608Q9ULD9 1512 aaPredicted RBP12.45□□□□□ -0.42
HDAC3-202ENST00000459727 NUP160Q12769 1436 aa12.42□□□□□ -0.42
HDAC3-202ENST00000459727 DDX10Q13206 875 aaKnown RBP12.41□□□□□ -0.42
HDAC3-202ENST00000459727 ADGBQ8N7X0 1667 aa12.41□□□□□ -0.42
HDAC3-202ENST00000459727 KDM5BQ9UGL1 1544 aa12.41□□□□□ -0.42
HDAC3-202ENST00000459727 ADGRL2O95490 1459 aa12.4□□□□□ -0.42
HDAC3-202ENST00000459727 RPRD2Q5VT52 1461 aaKnown RBP12.4□□□□□ -0.43
HDAC3-202ENST00000459727 ABCC5O15440 1437 aa12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms