RNA–Protein interactions for RNA: ENST00000452483.1

HMGB3P21-201, Transcript of high mobility group box 3 pseudogene 21, humanhuman

BASIC

Gene HMGB3P21, Length 547 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P21-201ENST00000452483 NUBP1P53384 320 aa8.78□□□□□ -1
HMGB3P21-201ENST00000452483 ZNF579Q8NAF0 562 aaKnown RBP8.76□□□□□ -1.01
HMGB3P21-201ENST00000452483 TSPYL2Q9H2G4 693 aaPredicted RBP8.76□□□□□ -1.01
HMGB3P21-201ENST00000452483 FAM212AQ96EL1 285 aa8.75□□□□□ -1.01
HMGB3P21-201ENST00000452483 SPOCK2Q92563 424 aa8.74□□□□□ -1.01
HMGB3P21-201ENST00000452483 PHF12Q96QT6 1004 aa8.71□□□□□ -1.02
HMGB3P21-201ENST00000452483 CCDC61Q9Y6R9 512 aa8.71□□□□□ -1.02
HMGB3P21-201ENST00000452483 GABBR2O75899 941 aa8.7□□□□□ -1.02
HMGB3P21-201ENST00000452483 PCDH10Q9P2E7 1040 aa8.68□□□□□ -1.02
HMGB3P21-201ENST00000452483 DCAF8Q5TAQ9 597 aa8.67□□□□□ -1.02
HMGB3P21-201ENST00000452483 CLCN6P51797 869 aa8.66□□□□□ -1.02
HMGB3P21-201ENST00000452483 GSE1Q14687 1217 aa8.66□□□□□ -1.02
HMGB3P21-201ENST00000452483 KIF12Q96FN5 646 aa8.62□□□□□ -1.03
HMGB3P21-201ENST00000452483 CIZ1Q9ULV3 898 aaPredicted RBP8.62□□□□□ -1.03
HMGB3P21-201ENST00000452483 GALR2O43603 387 aaPredicted RBP8.61□□□□□ -1.03
HMGB3P21-201ENST00000452483 MS4A3Q96HJ5 214 aa8.61□□□□□ -1.03
HMGB3P21-201ENST00000452483 PYGBP11216 843 aa8.6□□□□□ -1.03
HMGB3P21-201ENST00000452483 POTEMA6NI47 508 aa8.59□□□□□ -1.03
HMGB3P21-201ENST00000452483 MAP3K13O43283 966 aa8.59□□□□□ -1.03
HMGB3P21-201ENST00000452483 DAXXQ9UER7 740 aaPredicted RBP8.59□□□□□ -1.03
HMGB3P21-201ENST00000452483 PCDHB13Q9Y5F0 798 aa8.57□□□□□ -1.04
HMGB3P21-201ENST00000452483 SGIP1Q9BQI5 828 aa8.56□□□□□ -1.04
HMGB3P21-201ENST00000452483 TRIM41Q8WV44 630 aa8.54□□□□□ -1.04
HMGB3P21-201ENST00000452483 CHRM1P11229 460 aaPredicted RBP8.53□□□□□ -1.04
HMGB3P21-201ENST00000452483 IFNL1Q8IU54 200 aa8.53□□□□□ -1.04
HMGB3P21-201ENST00000452483 POTEGQ6S5H5 508 aa8.52□□□□□ -1.05
HMGB3P21-201ENST00000452483 DCBLD2Q96PD2 775 aa8.52□□□□□ -1.05
HMGB3P21-201ENST00000452483 ZNF467Q7Z7K2 595 aaPredicted RBP8.5□□□□□ -1.05
HMGB3P21-201ENST00000452483 TRPC6Q9Y210 931 aa8.5□□□□□ -1.05
HMGB3P21-201ENST00000452483 POTEIP0CG38 1075 aa8.49□□□□□ -1.05
HMGB3P21-201ENST00000452483 PCDHB8Q9UN66 801 aa8.49□□□□□ -1.05
HMGB3P21-201ENST00000452483 PKD2Q13563 968 aa8.48□□□□□ -1.05
HMGB3P21-201ENST00000452483 TIE1P35590 1138 aa8.47□□□□□ -1.05
HMGB3P21-201ENST00000452483 PRKCSHP14314 528 aaPredicted RBP8.46□□□□□ -1.06
HMGB3P21-201ENST00000452483 ASTLQ6HA08 431 aaPredicted RBP8.46□□□□□ -1.06
HMGB3P21-201ENST00000452483 BMP2KQ9NSY1 1161 aaPredicted RBP8.46□□□□□ -1.06
HMGB3P21-201ENST00000452483 ECM2O94769 699 aaPredicted RBP8.45□□□□□ -1.06
HMGB3P21-201ENST00000452483 ATMINO43313 823 aaPredicted RBP8.44□□□□□ -1.06
HMGB3P21-201ENST00000452483 RNF25Q96BH1 459 aaPredicted RBP8.44□□□□□ -1.06
HMGB3P21-201ENST00000452483 TTLL13PA6NNM8 815 aa8.43□□□□□ -1.06
HMGB3P21-201ENST00000452483 ATN1P54259 1190 aaPredicted RBP8.43□□□□□ -1.06
HMGB3P21-201ENST00000452483 TMEM106CQ9BVX2 250 aa8.42□□□□□ -1.06
HMGB3P21-201ENST00000452483 RIOK3O14730 519 aaKnown RBP8.41□□□□□ -1.06
HMGB3P21-201ENST00000452483 PDAP1Q13442 181 aaKnown RBP8.41□□□□□ -1.06
HMGB3P21-201ENST00000452483 PSEN1P49768 467 aa8.39□□□□□ -1.07
HMGB3P21-201ENST00000452483 PELP1Q8IZL8 1130 aaKnown RBP8.39□□□□□ -1.07
HMGB3P21-201ENST00000452483 TRIM35Q9UPQ4 493 aa8.39□□□□□ -1.07
HMGB3P21-201ENST00000452483 RGL2O15211 777 aa8.38□□□□□ -1.07
HMGB3P21-201ENST00000452483 VGFO15240 615 aaPredicted RBP8.36□□□□□ -1.07
HMGB3P21-201ENST00000452483 SLC39A7Q92504 469 aa8.36□□□□□ -1.07
HMGB3P21-201ENST00000452483 OTUD5Q96G74 571 aa8.36□□□□□ -1.07
HMGB3P21-201ENST00000452483 BCANQ96GW7 911 aa8.36□□□□□ -1.07
HMGB3P21-201ENST00000452483 METRNQ9UJH8 293 aa8.35□□□□□ -1.07
HMGB3P21-201ENST00000452483 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP8.33□□□□□ -1.08
HMGB3P21-201ENST00000452483 ZFP91Q96JP5 570 aaPredicted RBP8.33□□□□□ -1.08
HMGB3P21-201ENST00000452483 TAOK2Q9UL54 1235 aa8.33□□□□□ -1.08
HMGB3P21-201ENST00000452483 C7P10643 843 aa8.32□□□□□ -1.08
HMGB3P21-201ENST00000452483 GOLGA2Q08379 1002 aa8.32□□□□□ -1.08
HMGB3P21-201ENST00000452483 IER5LQ5T953 404 aa8.32□□□□□ -1.08
HMGB3P21-201ENST00000452483 ARXQ96QS3 562 aa8.31□□□□□ -1.08
HMGB3P21-201ENST00000452483 CABP2Q9NPB3 220 aa8.3□□□□□ -1.08
HMGB3P21-201ENST00000452483 STK25O00506 426 aa8.27□□□□□ -1.09
HMGB3P21-201ENST00000452483 MKRN3Q13064 507 aaKnown RBP8.27□□□□□ -1.09
HMGB3P21-201ENST00000452483 BCL11BQ9C0K0 894 aaPredicted RBP8.27□□□□□ -1.09
HMGB3P21-201ENST00000452483 POTEFA5A3E0 1075 aa8.26□□□□□ -1.09
HMGB3P21-201ENST00000452483 SEC24BO95487 1268 aa8.26□□□□□ -1.09
HMGB3P21-201ENST00000452483 COLQQ9Y215 455 aaPredicted RBP8.26□□□□□ -1.09
HMGB3P21-201ENST00000452483 STK24Q9Y6E0 443 aa8.26□□□□□ -1.09
HMGB3P21-201ENST00000452483 PLCG2P16885 1265 aa8.25□□□□□ -1.09
HMGB3P21-201ENST00000452483 IRX5P78411 483 aaPredicted RBP8.25□□□□□ -1.09
HMGB3P21-201ENST00000452483 PLCB2Q00722 1185 aa8.25□□□□□ -1.09
HMGB3P21-201ENST00000452483 EFCAB3Q8N7B9 438 aa8.23□□□□□ -1.09
HMGB3P21-201ENST00000452483 DCAF8L2P0C7V8 631 aa8.22□□□□□ -1.09
HMGB3P21-201ENST00000452483 HS6ST3Q8IZP7 471 aa8.22□□□□□ -1.09
HMGB3P21-201ENST00000452483 OCEL1Q9H607 264 aa8.22□□□□□ -1.09
HMGB3P21-201ENST00000452483 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP8.22□□□□□ -1.09
HMGB3P21-201ENST00000452483 POTEB2H3BUK9 544 aa8.21□□□□□ -1.1
HMGB3P21-201ENST00000452483 HAP1P54257 671 aaPredicted RBP8.21□□□□□ -1.1
HMGB3P21-201ENST00000452483 PDCD7Q8N8D1 485 aaKnown RBP8.21□□□□□ -1.1
HMGB3P21-201ENST00000452483 CHGAP10645 457 aaKnown RBP8.2□□□□□ -1.1
HMGB3P21-201ENST00000452483 TPRNQ4KMQ1 711 aa8.2□□□□□ -1.1
HMGB3P21-201ENST00000452483 TIMELESSQ9UNS1 1208 aa8.2□□□□□ -1.1
HMGB3P21-201ENST00000452483 ILDR1Q86SU0 546 aaPredicted RBP8.19□□□□□ -1.1
HMGB3P21-201ENST00000452483 SOX12O15370 315 aa8.17□□□□□ -1.1
HMGB3P21-201ENST00000452483 POTEJP0CG39 1038 aa8.16□□□□□ -1.1
HMGB3P21-201ENST00000452483 PHF8Q9UPP1 1060 aa8.16□□□□□ -1.1
HMGB3P21-201ENST00000452483 TULP1O00294 542 aaPredicted RBP8.15□□□□□ -1.1
HMGB3P21-201ENST00000452483 MFRPQ9BY79 579 aa8.14□□□□□ -1.11
HMGB3P21-201ENST00000452483 NLRP6P59044 892 aa8.13□□□□□ -1.11
HMGB3P21-201ENST00000452483 MS4A4AQ96JQ5 239 aa8.13□□□□□ -1.11
HMGB3P21-201ENST00000452483 DPY19L2Q6NUT2 758 aa8.12□□□□□ -1.11
HMGB3P21-201ENST00000452483 MAMSTRQ6ZN01 415 aa8.12□□□□□ -1.11
HMGB3P21-201ENST00000452483 FBXO22Q8NEZ5 403 aa8.12□□□□□ -1.11
HMGB3P21-201ENST00000452483 DNAJC5Q9H3Z4 198 aa8.12□□□□□ -1.11
HMGB3P21-201ENST00000452483 SCUBE2Q9NQ36 999 aa8.12□□□□□ -1.11
HMGB3P21-201ENST00000452483 HOMEZQ8IX15 550 aa8.1□□□□□ -1.11
HMGB3P21-201ENST00000452483 L3MBTL3Q96JM7 780 aaPredicted RBP8.1□□□□□ -1.11
HMGB3P21-201ENST00000452483 G3V3G9 751 aa8.08□□□□□ -1.12
HMGB3P21-201ENST00000452483 NKX1-1Q15270 411 aaPredicted RBP8.08□□□□□ -1.12
HMGB3P21-201ENST00000452483 BOLA1Q9Y3E2 137 aa8.08□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 73.5 ms