RNA–Protein interactions for RNA: ENST00000443503.6

CTDSPL-206, Transcript of CTD small phosphatase like, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene CTDSPL, Length 4,640 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDSPL-206ENST00000443503 NEFMP07197 916 aa30.46■■■□□ 2.47
CTDSPL-206ENST00000443503 PLEKHD1A6NEE1 506 aa30.44■■■□□ 2.46
CTDSPL-206ENST00000443503 BCL11AQ9H165 835 aa30.43■■■□□ 2.46
CTDSPL-206ENST00000443503 CARMIL1Q5VZK9 1371 aa30.41■■■□□ 2.46
CTDSPL-206ENST00000443503 CUX2O14529 1486 aa30.41■■■□□ 2.46
CTDSPL-206ENST00000443503 SIN3AQ96ST3 1273 aa30.4■■■□□ 2.46
CTDSPL-206ENST00000443503 ZBTB47Q9UFB7 747 aaPredicted RBP30.38■■■□□ 2.45
CTDSPL-206ENST00000443503 KCNH8Q96L42 1107 aa30.38■■■□□ 2.45
CTDSPL-206ENST00000443503 CFDP1Q9UEE9 299 aaPredicted RBP30.36■■■□□ 2.45
CTDSPL-206ENST00000443503 STAG3Q9UJ98 1225 aa30.35■■■□□ 2.45
CTDSPL-206ENST00000443503 CCNB3Q8WWL7 1395 aa30.34■■■□□ 2.45
CTDSPL-206ENST00000443503 ESF1Q9H501 851 aaKnown RBP30.34■■■□□ 2.45
CTDSPL-206ENST00000443503 SLC24A1O60721 1099 aa30.33■■■□□ 2.45
CTDSPL-206ENST00000443503 WIZO95785 1651 aa30.32■■■□□ 2.44
CTDSPL-206ENST00000443503 ANP32AP39687 249 aaKnown RBP30.32■■■□□ 2.44
CTDSPL-206ENST00000443503 NPM2Q86SE8 214 aaKnown RBP30.31■■■□□ 2.44
CTDSPL-206ENST00000443503 VPS8Q8N3P4 1428 aa30.3■■■□□ 2.44
CTDSPL-206ENST00000443503 IRX6P78412 446 aaPredicted RBP30.27■■■□□ 2.44
CTDSPL-206ENST00000443503 KANK4Q5T7N3 995 aaPredicted RBP30.26■■■□□ 2.43
CTDSPL-206ENST00000443503 RGL3Q3MIN7 710 aa30.24■■■□□ 2.43
CTDSPL-206ENST00000443503 FHAD1B1AJZ9 1412 aa30.24■■■□□ 2.43
CTDSPL-206ENST00000443503 CCDC136Q96JN2 1154 aa30.2■■■□□ 2.43
CTDSPL-206ENST00000443503 TOP2AP11388 1531 aaKnown RBP30.17■■■□□ 2.42
CTDSPL-206ENST00000443503 SMARCA2P51531 1590 aa30.17■■■□□ 2.42
CTDSPL-206ENST00000443503 WDR43Q15061 677 aaKnown RBP eCLIP30.13■■■□□ 2.41
CTDSPL-206ENST00000443503 PLPPR3Q6T4P5 718 aa30.13■■■□□ 2.41
CTDSPL-206ENST00000443503 SENP3-EIF4A1A0A087X0R7 540 aa30.08■■■□□ 2.41
CTDSPL-206ENST00000443503 ERCC6Q03468 1493 aa30.03■■■□□ 2.4
CTDSPL-206ENST00000443503 SENP3Q9H4L4 574 aaPredicted RBP30.02■■■□□ 2.4
CTDSPL-206ENST00000443503 CARD11Q9BXL7 1154 aa30.02■■■□□ 2.4
CTDSPL-206ENST00000443503 EIF4G1Q04637 1599 aaKnown RBP30■■■□□ 2.39
CTDSPL-206ENST00000443503 TDRD9Q8NDG6 1382 aaKnown RBP30■■■□□ 2.39
CTDSPL-206ENST00000443503 SETD5Q9C0A6 1442 aa29.94■■■□□ 2.38
CTDSPL-206ENST00000443503 GOLGA6L2Q8N9W4 650 aaPredicted RBP29.94■■■□□ 2.38
CTDSPL-206ENST00000443503 ATAD2BQ9ULI0 1458 aa29.93■■■□□ 2.38
CTDSPL-206ENST00000443503 RUSC2Q8N2Y8 1516 aa29.91■■■□□ 2.38
CTDSPL-206ENST00000443503 SUPT16HQ9Y5B9 1047 aaKnown RBP29.9■■■□□ 2.38
CTDSPL-206ENST00000443503 TIMELESSQ9UNS1 1208 aa29.9■■■□□ 2.38
CTDSPL-206ENST00000443503 RAPGEF2Q9Y4G8 1499 aa29.89■■■□□ 2.38
CTDSPL-206ENST00000443503 SMARCA4P51532 1647 aa29.86■■■□□ 2.37
CTDSPL-206ENST00000443503 ARHGAP35Q9NRY4 1499 aa29.86■■■□□ 2.37
CTDSPL-206ENST00000443503 CADPSQ9ULU8 1353 aa29.85■■■□□ 2.37
CTDSPL-206ENST00000443503 RAB3GAP2Q9H2M9 1393 aa29.84■■■□□ 2.37
CTDSPL-206ENST00000443503 PDS5BQ9NTI5 1447 aa29.8■■■□□ 2.36
CTDSPL-206ENST00000443503 UPF2Q9HAU5 1272 aaKnown RBP29.79■■■□□ 2.36
CTDSPL-206ENST00000443503 KNSTRNQ9Y448 316 aa29.77■■■□□ 2.36
CTDSPL-206ENST00000443503 FOXD1Q16676 465 aa29.77■■■□□ 2.36
CTDSPL-206ENST00000443503 DCAF11Q8TEB1 546 aa29.74■■■□□ 2.35
CTDSPL-206ENST00000443503 FMN1Q68DA7 1419 aa29.74■■■□□ 2.35
CTDSPL-206ENST00000443503 CDCA8Q53HL2 280 aa29.73■■■□□ 2.35
CTDSPL-206ENST00000443503 FHOD3Q2V2M9 1422 aa29.7■■■□□ 2.35
CTDSPL-206ENST00000443503 PPP1R15AO75807 674 aaPredicted RBP29.69■■■□□ 2.34
CTDSPL-206ENST00000443503 HSP90AA1P07900 732 aaKnown RBP29.68■■■□□ 2.34
CTDSPL-206ENST00000443503 NBR1Q14596 966 aa29.68■■■□□ 2.34
CTDSPL-206ENST00000443503 HSPA5P11021 654 aaKnown RBP29.67■■■□□ 2.34
CTDSPL-206ENST00000443503 PKD2Q13563 968 aa29.65■■■□□ 2.34
CTDSPL-206ENST00000443503 MPHOSPH9Q99550 1183 aa29.6■■■□□ 2.33
CTDSPL-206ENST00000443503 CC2D1BQ5T0F9 858 aaKnown RBP29.58■■■□□ 2.33
CTDSPL-206ENST00000443503 CCER2I3L3R5 266 aa29.57■■■□□ 2.32
CTDSPL-206ENST00000443503 CARMIL2Q6F5E8 1435 aa29.54■■■□□ 2.32
CTDSPL-206ENST00000443503 NEUROD2Q15784 382 aa29.54■■■□□ 2.32
CTDSPL-206ENST00000443503 CFAP53Q96M91 514 aa29.54■■■□□ 2.32
CTDSPL-206ENST00000443503 PPP4R2Q9NY27 417 aa29.5■■■□□ 2.31
CTDSPL-206ENST00000443503 PPM1GO15355 546 aaPredicted RBP29.48■■■□□ 2.31
CTDSPL-206ENST00000443503 TNNT2P45379 298 aaPredicted RBP29.47■■■□□ 2.31
CTDSPL-206ENST00000443503 TMF1P82094 1093 aa29.47■■■□□ 2.31
CTDSPL-206ENST00000443503 DHX57Q6P158 1386 aaKnown RBP29.45■■■□□ 2.31
CTDSPL-206ENST00000443503 NUP155O75694 1391 aa29.45■■■□□ 2.3
CTDSPL-206ENST00000443503 L3MBTL2Q969R5 705 aa29.44■■■□□ 2.3
CTDSPL-206ENST00000443503 PLEKHG5O94827 1062 aa29.43■■■□□ 2.3
CTDSPL-206ENST00000443503 B4GALNT3Q6L9W6 998 aa29.43■■■□□ 2.3
CTDSPL-206ENST00000443503 ARID4BQ4LE39 1312 aaPredicted RBP29.42■■■□□ 2.3
CTDSPL-206ENST00000443503 FANCD2Q9BXW9 1451 aa29.41■■■□□ 2.3
CTDSPL-206ENST00000443503 POGKQ9P215 609 aa29.4■■■□□ 2.3
CTDSPL-206ENST00000443503 C14orf37Q86TY3 774 aa29.38■■■□□ 2.29
CTDSPL-206ENST00000443503 ANKRD30AQ9BXX3 1397 aa29.36■■■□□ 2.29
CTDSPL-206ENST00000443503 MYH16Q9H6N6 1097 aa29.36■■■□□ 2.29
CTDSPL-206ENST00000443503 IGF1RP08069 1367 aa29.35■■■□□ 2.29
CTDSPL-206ENST00000443503 KANK1Q14678 1352 aa29.34■■■□□ 2.29
CTDSPL-206ENST00000443503 JPH4Q96JJ6 628 aa29.34■■■□□ 2.29
CTDSPL-206ENST00000443503 ZBTB7CA1YPR0 619 aa29.33■■■□□ 2.29
CTDSPL-206ENST00000443503 GGT6Q6P531 493 aa29.32■■■□□ 2.28
CTDSPL-206ENST00000443503 HNRNPMP52272 730 aaKnown RBP eCLIP29.32■■■□□ 2.287e-7■■■■□ 19.6
CTDSPL-206ENST00000443503 EFCAB2Q5VUJ9 269 aa29.32■■■□□ 2.28
CTDSPL-206ENST00000443503 ARXQ96QS3 562 aa29.29■■■□□ 2.28
CTDSPL-206ENST00000443503 NUDCQ9Y266 331 aa29.29■■■□□ 2.28
CTDSPL-206ENST00000443503 MAPK8IP3Q9UPT6 1336 aa29.28■■■□□ 2.28
CTDSPL-206ENST00000443503 FRAT1Q92837 279 aaPredicted RBP29.27■■■□□ 2.28
CTDSPL-206ENST00000443503 ANP32BQ92688 251 aaKnown RBP29.27■■■□□ 2.28
CTDSPL-206ENST00000443503 FTSJ3Q8IY81 847 aaKnown RBP29.25■■■□□ 2.27
CTDSPL-206ENST00000443503 CCDC18Q5T9S5 1454 aa29.25■■■□□ 2.27
CTDSPL-206ENST00000443503 FGD5Q6ZNL6 1462 aa29.24■■■□□ 2.27
CTDSPL-206ENST00000443503 U2SURPO15042 1029 aaKnown RBP29.24■■■□□ 2.27
CTDSPL-206ENST00000443503 RGS3P49796 1198 aa29.24■■■□□ 2.27
CTDSPL-206ENST00000443503 SAFB2Q14151 953 aaKnown RBP eCLIP29.23■■■□□ 2.27
CTDSPL-206ENST00000443503 LAS1LQ9Y4W2 734 aaKnown RBP29.22■■■□□ 2.27
CTDSPL-206ENST00000443503 ROCK2O75116 1388 aaKnown RBP29.22■■■□□ 2.27
CTDSPL-206ENST00000443503 DDRGK1Q96HY6 314 aa29.21■■■□□ 2.27
CTDSPL-206ENST00000443503 MLECQ14165 292 aa29.19■■■□□ 2.26
CTDSPL-206ENST00000443503 KTN1Q86UP2 1357 aaKnown RBP29.17■■■□□ 2.26
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms