RNA–Protein interactions for RNA: ENST00000438629.2

LSM1P1-201, Transcript of LSM1 homolog, mRNA degradation associated pseudogene 1, humanhuman

BASIC

Gene LSM1P1, Length 273 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1P1-201ENST00000438629 TAOK2Q9UL54 1235 aa9.7□□□□□ -0.86
LSM1P1-201ENST00000438629 PAK3O75914 559 aaPredicted RBP9.68□□□□□ -0.86
LSM1P1-201ENST00000438629 RGL2O15211 777 aa9.67□□□□□ -0.86
LSM1P1-201ENST00000438629 TSPYL2Q9H2G4 693 aaPredicted RBP9.64□□□□□ -0.87
LSM1P1-201ENST00000438629 RIOK3O14730 519 aaKnown RBP9.61□□□□□ -0.87
LSM1P1-201ENST00000438629 SLC24A1O60721 1099 aa9.59□□□□□ -0.87
LSM1P1-201ENST00000438629 PYGBP11216 843 aa9.59□□□□□ -0.87
LSM1P1-201ENST00000438629 BBXQ8WY36 941 aaPredicted RBP9.59□□□□□ -0.87
LSM1P1-201ENST00000438629 ZBTB4Q9P1Z0 1013 aaPredicted RBP9.58□□□□□ -0.88
LSM1P1-201ENST00000438629 VGFO15240 615 aaPredicted RBP9.57□□□□□ -0.88
LSM1P1-201ENST00000438629 CHGAP10645 457 aaKnown RBP9.56□□□□□ -0.88
LSM1P1-201ENST00000438629 CCDC61Q9Y6R9 512 aa9.56□□□□□ -0.88
LSM1P1-201ENST00000438629 ZNF467Q7Z7K2 595 aaPredicted RBP9.55□□□□□ -0.88
LSM1P1-201ENST00000438629 RNF25Q96BH1 459 aaPredicted RBP9.55□□□□□ -0.88
LSM1P1-201ENST00000438629 CD44P16070 742 aaKnown RBP9.54□□□□□ -0.88
LSM1P1-201ENST00000438629 SGIP1Q9BQI5 828 aa9.53□□□□□ -0.88
LSM1P1-201ENST00000438629 PLCB2Q00722 1185 aa9.52□□□□□ -0.89
LSM1P1-201ENST00000438629 HS6ST3Q8IZP7 471 aa9.52□□□□□ -0.89
LSM1P1-201ENST00000438629 ZRANB1Q9UGI0 708 aa9.52□□□□□ -0.89
LSM1P1-201ENST00000438629 ZNF579Q8NAF0 562 aaKnown RBP9.49□□□□□ -0.89
LSM1P1-201ENST00000438629 C19orf67A6NJJ6 358 aa9.48□□□□□ -0.89
LSM1P1-201ENST00000438629 STK25O00506 426 aa9.47□□□□□ -0.89
LSM1P1-201ENST00000438629 DNAJC5Q9H3Z4 198 aa9.47□□□□□ -0.89
LSM1P1-201ENST00000438629 PCDHB13Q9Y5F0 798 aa9.47□□□□□ -0.89
LSM1P1-201ENST00000438629 KIF12Q96FN5 646 aa9.46□□□□□ -0.9
LSM1P1-201ENST00000438629 PDAP1Q13442 181 aaKnown RBP9.45□□□□□ -0.9
LSM1P1-201ENST00000438629 SPRYD3Q8NCJ5 442 aa9.45□□□□□ -0.9
LSM1P1-201ENST00000438629 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP9.44□□□□□ -0.9
LSM1P1-201ENST00000438629 MAP3K13O43283 966 aa9.44□□□□□ -0.9
LSM1P1-201ENST00000438629 ZFP91Q96JP5 570 aaPredicted RBP9.44□□□□□ -0.9
LSM1P1-201ENST00000438629 PCDHB8Q9UN66 801 aa9.43□□□□□ -0.9
LSM1P1-201ENST00000438629 HAX1O00165 279 aa9.42□□□□□ -0.9
LSM1P1-201ENST00000438629 CLCN6P51797 869 aa9.42□□□□□ -0.9
LSM1P1-201ENST00000438629 PAXIP1Q6ZW49 1069 aaPredicted RBP9.42□□□□□ -0.9
LSM1P1-201ENST00000438629 BCL11BQ9C0K0 894 aaPredicted RBP9.42□□□□□ -0.9
LSM1P1-201ENST00000438629 STK24Q9Y6E0 443 aa9.42□□□□□ -0.9
LSM1P1-201ENST00000438629 CFAP44Q96MT7 982 aa9.41□□□□□ -0.9
LSM1P1-201ENST00000438629 PSEN1P49768 467 aa9.4□□□□□ -0.9
LSM1P1-201ENST00000438629 IFNL1Q8IU54 200 aa9.4□□□□□ -0.9
LSM1P1-201ENST00000438629 RYDENQ9NUL5 291 aaKnown RBP9.4□□□□□ -0.9
LSM1P1-201ENST00000438629 PHF12Q96QT6 1004 aa9.39□□□□□ -0.91
LSM1P1-201ENST00000438629 HAP1P54257 671 aaPredicted RBP9.38□□□□□ -0.91
LSM1P1-201ENST00000438629 NKX1-1Q15270 411 aaPredicted RBP9.31□□□□□ -0.92
LSM1P1-201ENST00000438629 POTEHQ6S545 545 aa9.3□□□□□ -0.92
LSM1P1-201ENST00000438629 VSIG10Q8N0Z9 540 aa9.3□□□□□ -0.92
LSM1P1-201ENST00000438629 MS4A3Q96HJ5 214 aa9.3□□□□□ -0.92
LSM1P1-201ENST00000438629 GTPBP6O43824 516 aaPredicted RBP9.29□□□□□ -0.92
LSM1P1-201ENST00000438629 GOLGA2Q08379 1002 aa9.28□□□□□ -0.92
LSM1P1-201ENST00000438629 SOX12O15370 315 aa9.27□□□□□ -0.93
LSM1P1-201ENST00000438629 TIE1P35590 1138 aa9.27□□□□□ -0.93
LSM1P1-201ENST00000438629 TMEM106CQ9BVX2 250 aa9.26□□□□□ -0.93
LSM1P1-201ENST00000438629 CABP2Q9NPB3 220 aa9.26□□□□□ -0.93
LSM1P1-201ENST00000438629 EVX2Q03828 476 aa9.25□□□□□ -0.93
LSM1P1-201ENST00000438629 NLRP6P59044 892 aa9.23□□□□□ -0.93
LSM1P1-201ENST00000438629 EFCAB3Q8N7B9 438 aa9.23□□□□□ -0.93
LSM1P1-201ENST00000438629 TSHZ2Q9NRE2 1034 aa9.22□□□□□ -0.93
LSM1P1-201ENST00000438629 GALR2O43603 387 aaPredicted RBP9.21□□□□□ -0.94
LSM1P1-201ENST00000438629 MKRN3Q13064 507 aaKnown RBP9.21□□□□□ -0.94
LSM1P1-201ENST00000438629 TTLL13PA6NNM8 815 aa9.19□□□□□ -0.94
LSM1P1-201ENST00000438629 MFRPQ9BY79 579 aa9.19□□□□□ -0.94
LSM1P1-201ENST00000438629 TRPC6Q9Y210 931 aa9.19□□□□□ -0.94
LSM1P1-201ENST00000438629 BMP2KQ9NSY1 1161 aaPredicted RBP9.17□□□□□ -0.94
LSM1P1-201ENST00000438629 GABBR2O75899 941 aa9.16□□□□□ -0.94
LSM1P1-201ENST00000438629 PHF8Q9UPP1 1060 aa9.15□□□□□ -0.94
LSM1P1-201ENST00000438629 FBXO22Q8NEZ5 403 aa9.14□□□□□ -0.95
LSM1P1-201ENST00000438629 TRIM35Q9UPQ4 493 aa9.13□□□□□ -0.95
LSM1P1-201ENST00000438629 ASTLQ6HA08 431 aaPredicted RBP9.12□□□□□ -0.95
LSM1P1-201ENST00000438629 DCBLD2Q96PD2 775 aa9.12□□□□□ -0.95
LSM1P1-201ENST00000438629 KDM2AQ9Y2K7 1162 aa9.12□□□□□ -0.95
LSM1P1-201ENST00000438629 ATMINO43313 823 aaPredicted RBP9.11□□□□□ -0.95
LSM1P1-201ENST00000438629 IER5LQ5T953 404 aa9.1□□□□□ -0.95
LSM1P1-201ENST00000438629 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP9.1□□□□□ -0.95
LSM1P1-201ENST00000438629 ATN1P54259 1190 aaPredicted RBP9.09□□□□□ -0.95
LSM1P1-201ENST00000438629 ILDR1Q86SU0 546 aaPredicted RBP9.07□□□□□ -0.96
LSM1P1-201ENST00000438629 SP7Q8TDD2 431 aaPredicted RBP9.07□□□□□ -0.96
LSM1P1-201ENST00000438629 PPP1R37O75864 691 aa9.06□□□□□ -0.96
LSM1P1-201ENST00000438629 MS4A4AQ96JQ5 239 aa9.05□□□□□ -0.96
LSM1P1-201ENST00000438629 OCEL1Q9H607 264 aa9.05□□□□□ -0.96
LSM1P1-201ENST00000438629 WDR70Q9NW82 654 aa9.05□□□□□ -0.96
LSM1P1-201ENST00000438629 BCANQ96GW7 911 aa9.02□□□□□ -0.97
LSM1P1-201ENST00000438629 IRX5P78411 483 aaPredicted RBP9.01□□□□□ -0.97
LSM1P1-201ENST00000438629 SLC39A7Q92504 469 aa9.01□□□□□ -0.97
LSM1P1-201ENST00000438629 G3V3G9 751 aa9□□□□□ -0.97
LSM1P1-201ENST00000438629 SEC24BO95487 1268 aa9□□□□□ -0.97
LSM1P1-201ENST00000438629 C7P10643 843 aa9□□□□□ -0.97
LSM1P1-201ENST00000438629 PLCG2P16885 1265 aa9□□□□□ -0.97
LSM1P1-201ENST00000438629 PDE4AP27815 886 aa8.99□□□□□ -0.97
LSM1P1-201ENST00000438629 CADPS2Q86UW7 1296 aa8.98□□□□□ -0.97
LSM1P1-201ENST00000438629 L3MBTL3Q96JM7 780 aaPredicted RBP8.98□□□□□ -0.97
LSM1P1-201ENST00000438629 PDCD7Q8N8D1 485 aaKnown RBP8.97□□□□□ -0.97
LSM1P1-201ENST00000438629 P3H3Q8IVL6 736 aa8.96□□□□□ -0.98
LSM1P1-201ENST00000438629 PELP1Q8IZL8 1130 aaKnown RBP8.95□□□□□ -0.98
LSM1P1-201ENST00000438629 DPY19L2Q6NUT2 758 aa8.94□□□□□ -0.98
LSM1P1-201ENST00000438629 BOLA1Q9Y3E2 137 aa8.94□□□□□ -0.98
LSM1P1-201ENST00000438629 MICALL2Q8IY33 904 aa8.92□□□□□ -0.98
LSM1P1-201ENST00000438629 LARP6Q9BRS8 491 aaKnown RBP8.92□□□□□ -0.98
LSM1P1-201ENST00000438629 POTEIP0CG38 1075 aa8.91□□□□□ -0.98
LSM1P1-201ENST00000438629 NBR1Q14596 966 aa8.91□□□□□ -0.98
LSM1P1-201ENST00000438629 TMEM121BQ9BXQ6 578 aaPredicted RBP8.91□□□□□ -0.98
LSM1P1-201ENST00000438629 CRISPLD2Q9H0B8 497 aa8.91□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 308 ms