RNA–Protein interactions for RNA: ENST00000438594.2

HMGB1P12-201, Transcript of high mobility group box 1 pseudogene 12, humanhuman

BASIC

Gene HMGB1P12, Length 598 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P12-201ENST00000438594 PLSCR2Q9NRY7 297 aa9.67□□□□□ -0.86
HMGB1P12-201ENST00000438594 METRNQ9UJH8 293 aa9.66□□□□□ -0.86
HMGB1P12-201ENST00000438594 ATMINO43313 823 aaPredicted RBP9.65□□□□□ -0.86
HMGB1P12-201ENST00000438594 ASTLQ6HA08 431 aaPredicted RBP9.64□□□□□ -0.87
HMGB1P12-201ENST00000438594 SLC39A7Q92504 469 aa9.64□□□□□ -0.87
HMGB1P12-201ENST00000438594 CCDC61Q9Y6R9 512 aa9.64□□□□□ -0.87
HMGB1P12-201ENST00000438594 PLCD3Q8N3E9 789 aa9.62□□□□□ -0.87
HMGB1P12-201ENST00000438594 C7P10643 843 aa9.61□□□□□ -0.87
HMGB1P12-201ENST00000438594 KIF12Q96FN5 646 aa9.6□□□□□ -0.87
HMGB1P12-201ENST00000438594 ATN1P54259 1190 aaPredicted RBP9.59□□□□□ -0.87
HMGB1P12-201ENST00000438594 RASEFQ8IZ41 740 aa9.58□□□□□ -0.88
HMGB1P12-201ENST00000438594 MAP3K13O43283 966 aa9.57□□□□□ -0.88
HMGB1P12-201ENST00000438594 TRPC6Q9Y210 931 aa9.55□□□□□ -0.88
HMGB1P12-201ENST00000438594 MAMSTRQ6ZN01 415 aa9.54□□□□□ -0.88
HMGB1P12-201ENST00000438594 BMP2KQ9NSY1 1161 aaPredicted RBP9.54□□□□□ -0.88
HMGB1P12-201ENST00000438594 POTEMA6NI47 508 aa9.53□□□□□ -0.88
HMGB1P12-201ENST00000438594 POTEJP0CG39 1038 aa9.51□□□□□ -0.89
HMGB1P12-201ENST00000438594 SCUBE2Q9NQ36 999 aa9.51□□□□□ -0.89
HMGB1P12-201ENST00000438594 FKBP8Q14318 412 aa9.5□□□□□ -0.89
HMGB1P12-201ENST00000438594 POTEGQ6S5H5 508 aa9.5□□□□□ -0.89
HMGB1P12-201ENST00000438594 ZBTB47Q9UFB7 747 aaPredicted RBP9.5□□□□□ -0.89
HMGB1P12-201ENST00000438594 TIE1P35590 1138 aa9.49□□□□□ -0.89
HMGB1P12-201ENST00000438594 SEC24BO95487 1268 aa9.48□□□□□ -0.89
HMGB1P12-201ENST00000438594 PCDHB13Q9Y5F0 798 aa9.48□□□□□ -0.89
HMGB1P12-201ENST00000438594 TTLL13PA6NNM8 815 aa9.46□□□□□ -0.9
HMGB1P12-201ENST00000438594 FAM163AQ96GL9 167 aaPredicted RBP9.46□□□□□ -0.9
HMGB1P12-201ENST00000438594 FAM212AQ96EL1 285 aa9.44□□□□□ -0.9
HMGB1P12-201ENST00000438594 POTEFA5A3E0 1075 aa9.43□□□□□ -0.9
HMGB1P12-201ENST00000438594 NUBP1P53384 320 aa9.42□□□□□ -0.9
HMGB1P12-201ENST00000438594 TRIM35Q9UPQ4 493 aa9.42□□□□□ -0.9
HMGB1P12-201ENST00000438594 COLQQ9Y215 455 aaPredicted RBP9.4□□□□□ -0.9
HMGB1P12-201ENST00000438594 IFNL1Q8IU54 200 aa9.39□□□□□ -0.91
HMGB1P12-201ENST00000438594 SGIP1Q9BQI5 828 aa9.39□□□□□ -0.91
HMGB1P12-201ENST00000438594 DCAF8Q5TAQ9 597 aa9.37□□□□□ -0.91
HMGB1P12-201ENST00000438594 TMEM106CQ9BVX2 250 aa9.37□□□□□ -0.91
HMGB1P12-201ENST00000438594 IER5LQ5T953 404 aa9.34□□□□□ -0.91
HMGB1P12-201ENST00000438594 PYGBP11216 843 aa9.33□□□□□ -0.92
HMGB1P12-201ENST00000438594 PLCG2P16885 1265 aa9.32□□□□□ -0.92
HMGB1P12-201ENST00000438594 LCE2DQ5TA82 110 aaPredicted RBP9.31□□□□□ -0.92
HMGB1P12-201ENST00000438594 PCDH10Q9P2E7 1040 aa9.31□□□□□ -0.92
HMGB1P12-201ENST00000438594 FBXO3Q9UK99 471 aa9.3□□□□□ -0.92
HMGB1P12-201ENST00000438594 KLHL34Q8N239 644 aa9.29□□□□□ -0.92
HMGB1P12-201ENST00000438594 SLAIN1Q8ND83 568 aa9.29□□□□□ -0.92
HMGB1P12-201ENST00000438594 PCDHB8Q9UN66 801 aa9.27□□□□□ -0.93
HMGB1P12-201ENST00000438594 IRX5P78411 483 aaPredicted RBP9.22□□□□□ -0.93
HMGB1P12-201ENST00000438594 OCEL1Q9H607 264 aa9.21□□□□□ -0.94
HMGB1P12-201ENST00000438594 VASPP50552 380 aaPredicted RBP9.19□□□□□ -0.94
HMGB1P12-201ENST00000438594 GOLGA2Q08379 1002 aa9.19□□□□□ -0.94
HMGB1P12-201ENST00000438594 GSE1Q14687 1217 aa9.19□□□□□ -0.94
HMGB1P12-201ENST00000438594 CDAN1Q8IWY9 1227 aa9.19□□□□□ -0.94
HMGB1P12-201ENST00000438594 ST18O60284 1047 aa9.18□□□□□ -0.94
HMGB1P12-201ENST00000438594 EIF2AK3Q9NZJ5 1116 aaKnown RBP9.16□□□□□ -0.94
HMGB1P12-201ENST00000438594 ZNF467Q7Z7K2 595 aaPredicted RBP9.15□□□□□ -0.94
HMGB1P12-201ENST00000438594 MKRN3Q13064 507 aaKnown RBP9.14□□□□□ -0.95
HMGB1P12-201ENST00000438594 C3orf67Q6ZVT6 689 aa9.11□□□□□ -0.95
HMGB1P12-201ENST00000438594 SNPHO15079 494 aa9.1□□□□□ -0.95
HMGB1P12-201ENST00000438594 PSEN1P49768 467 aa9.09□□□□□ -0.95
HMGB1P12-201ENST00000438594 CIZ1Q9ULV3 898 aaPredicted RBP9.09□□□□□ -0.95
HMGB1P12-201ENST00000438594 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP9.08□□□□□ -0.96
HMGB1P12-201ENST00000438594 L3MBTL3Q96JM7 780 aaPredicted RBP9.07□□□□□ -0.96
HMGB1P12-201ENST00000438594 PDCD7Q8N8D1 485 aaKnown RBP9.06□□□□□ -0.96
HMGB1P12-201ENST00000438594 MARVELD3Q96A59 401 aa9.06□□□□□ -0.96
HMGB1P12-201ENST00000438594 CHRM1P11229 460 aaPredicted RBP9.04□□□□□ -0.96
HMGB1P12-201ENST00000438594 SPOCK2Q92563 424 aa9.04□□□□□ -0.96
HMGB1P12-201ENST00000438594 TMEM121BQ9BXQ6 578 aaPredicted RBP9.04□□□□□ -0.96
HMGB1P12-201ENST00000438594 PDAP1Q13442 181 aaKnown RBP9.02□□□□□ -0.97
HMGB1P12-201ENST00000438594 G3V3G9 751 aa9.01□□□□□ -0.97
HMGB1P12-201ENST00000438594 CABP2Q9NPB3 220 aa9.01□□□□□ -0.97
HMGB1P12-201ENST00000438594 IFNLR1Q8IU57 520 aaPredicted RBP8.99□□□□□ -0.97
HMGB1P12-201ENST00000438594 EMP3P54852 163 aa8.98□□□□□ -0.97
HMGB1P12-201ENST00000438594 DPY19L2Q6NUT2 758 aa8.97□□□□□ -0.97
HMGB1P12-201ENST00000438594 SPNS2Q8IVW8 549 aa8.94□□□□□ -0.98
HMGB1P12-201ENST00000438594 FAM205CA6NFA0 338 aa8.93□□□□□ -0.98
HMGB1P12-201ENST00000438594 MMRN1Q13201 1228 aa8.93□□□□□ -0.98
HMGB1P12-201ENST00000438594 BOLA1Q9Y3E2 137 aa8.92□□□□□ -0.98
HMGB1P12-201ENST00000438594 HS3ST6Q96QI5 342 aa8.89□□□□□ -0.99
HMGB1P12-201ENST00000438594 ZNF710Q8N1W2 664 aa8.88□□□□□ -0.99
HMGB1P12-201ENST00000438594 ILDR1Q86SU0 546 aaPredicted RBP8.86□□□□□ -0.99
HMGB1P12-201ENST00000438594 EFCAB3Q8N7B9 438 aa8.86□□□□□ -0.99
HMGB1P12-201ENST00000438594 POTEB3A0JP26 581 aa8.84□□□□□ -0.99
HMGB1P12-201ENST00000438594 POTEBQ6S5H4 581 aa8.84□□□□□ -0.99
HMGB1P12-201ENST00000438594 TRIM41Q8WV44 630 aa8.84□□□□□ -0.99
HMGB1P12-201ENST00000438594 HOXB3P14651 431 aaPredicted RBP8.81□□□□□ -1
HMGB1P12-201ENST00000438594 DOK7Q18PE1 504 aa8.81□□□□□ -1
HMGB1P12-201ENST00000438594 KRTAP3-3Q9BYR6 98 aa8.81□□□□□ -1
HMGB1P12-201ENST00000438594 KRTAP3-2Q9BYR7 98 aa8.81□□□□□ -1
HMGB1P12-201ENST00000438594 ERBB3P21860 1342 aa8.8□□□□□ -1
HMGB1P12-201ENST00000438594 RIMBP2O15034 1052 aa8.79□□□□□ -1
HMGB1P12-201ENST00000438594 RIOK3O14730 519 aaKnown RBP8.77□□□□□ -1.01
HMGB1P12-201ENST00000438594 HOXB1P14653 301 aaPredicted RBP8.77□□□□□ -1.01
HMGB1P12-201ENST00000438594 MICALL2Q8IY33 904 aa8.76□□□□□ -1.01
HMGB1P12-201ENST00000438594 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP8.75□□□□□ -1.01
HMGB1P12-201ENST00000438594 ZFP91Q96JP5 570 aaPredicted RBP8.75□□□□□ -1.01
HMGB1P12-201ENST00000438594 SOX12O15370 315 aa8.73□□□□□ -1.01
HMGB1P12-201ENST00000438594 PHF8Q9UPP1 1060 aa8.73□□□□□ -1.01
HMGB1P12-201ENST00000438594 VGFO15240 615 aaPredicted RBP8.72□□□□□ -1.01
HMGB1P12-201ENST00000438594 VARS2Q5ST30 1063 aaKnown RBP8.72□□□□□ -1.01
HMGB1P12-201ENST00000438594 RNF25Q96BH1 459 aaPredicted RBP8.71□□□□□ -1.02
HMGB1P12-201ENST00000438594 TMEM92Q6UXU6 159 aa8.7□□□□□ -1.02
HMGB1P12-201ENST00000438594 MS4A4AQ96JQ5 239 aa8.69□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms