RNA–Protein interactions for RNA: ENST00000432425.5

CLK1-204, Transcript of CDC like kinase 1, humanhuman

TSL 1 (best)

Gene CLK1, Length 1,682 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-204ENST00000432425 ZNF579Q8NAF0 562 aaKnown RBP10.32□□□□□ -0.76
CLK1-204ENST00000432425 DCAF8Q5TAQ9 597 aa10.28□□□□□ -0.76
CLK1-204ENST00000432425 PHF12Q96QT6 1004 aa10.27□□□□□ -0.77
CLK1-204ENST00000432425 CLCN6P51797 869 aa10.26□□□□□ -0.77
CLK1-204ENST00000432425 CCDC61Q9Y6R9 512 aa10.26□□□□□ -0.77
CLK1-204ENST00000432425 GABBR2O75899 941 aa10.25□□□□□ -0.77
CLK1-204ENST00000432425 GSE1Q14687 1217 aa10.25□□□□□ -0.77
CLK1-204ENST00000432425 LHX8Q68G74 356 aa10.22□□□□□ -0.77
CLK1-204ENST00000432425 CIZ1Q9ULV3 898 aaPredicted RBP10.22□□□□□ -0.77
CLK1-204ENST00000432425 KIF12Q96FN5 646 aa10.18□□□□□ -0.78
CLK1-204ENST00000432425 GALR2O43603 387 aaPredicted RBP10.15□□□□□ -0.78
CLK1-204ENST00000432425 PYGBP11216 843 aa10.15□□□□□ -0.78
CLK1-204ENST00000432425 MAP3K13O43283 966 aa10.15□□□□□ -0.79
CLK1-204ENST00000432425 MS4A3Q96HJ5 214 aa10.15□□□□□ -0.79
CLK1-204ENST00000432425 PCDHB13Q9Y5F0 798 aa10.12□□□□□ -0.79
CLK1-204ENST00000432425 SGIP1Q9BQI5 828 aa10.11□□□□□ -0.79
CLK1-204ENST00000432425 TRIM41Q8WV44 630 aa10.1□□□□□ -0.79
CLK1-204ENST00000432425 DCBLD2Q96PD2 775 aa10.1□□□□□ -0.79
CLK1-204ENST00000432425 CHRM1P11229 460 aaPredicted RBP10.08□□□□□ -0.8
CLK1-204ENST00000432425 IFNL1Q8IU54 200 aa10.06□□□□□ -0.8
CLK1-204ENST00000432425 ZNF467Q7Z7K2 595 aaPredicted RBP10.04□□□□□ -0.8
CLK1-204ENST00000432425 PCDHB8Q9UN66 801 aa10.02□□□□□ -0.8
CLK1-204ENST00000432425 TRPC6Q9Y210 931 aa10.01□□□□□ -0.81
CLK1-204ENST00000432425 TIE1P35590 1138 aa10□□□□□ -0.81
CLK1-204ENST00000432425 ECM2O94769 699 aaPredicted RBP9.99□□□□□ -0.81
CLK1-204ENST00000432425 POTEIP0CG38 1075 aa9.99□□□□□ -0.81
CLK1-204ENST00000432425 PKD2Q13563 968 aa9.98□□□□□ -0.81
CLK1-204ENST00000432425 ASTLQ6HA08 431 aaPredicted RBP9.97□□□□□ -0.81
CLK1-204ENST00000432425 BMP2KQ9NSY1 1161 aaPredicted RBP9.97□□□□□ -0.81
CLK1-204ENST00000432425 ATMINO43313 823 aaPredicted RBP9.96□□□□□ -0.81
CLK1-204ENST00000432425 TMEM106CQ9BVX2 250 aa9.96□□□□□ -0.82
CLK1-204ENST00000432425 TTLL13PA6NNM8 815 aa9.94□□□□□ -0.82
CLK1-204ENST00000432425 ATN1P54259 1190 aaPredicted RBP9.93□□□□□ -0.82
CLK1-204ENST00000432425 RIOK3O14730 519 aaKnown RBP9.93□□□□□ -0.82
CLK1-204ENST00000432425 PDAP1Q13442 181 aaKnown RBP9.93□□□□□ -0.82
CLK1-204ENST00000432425 PSEN1P49768 467 aa9.92□□□□□ -0.82
CLK1-204ENST00000432425 RNF25Q96BH1 459 aaPredicted RBP9.9□□□□□ -0.82
CLK1-204ENST00000432425 PELP1Q8IZL8 1130 aaKnown RBP9.9□□□□□ -0.83
CLK1-204ENST00000432425 TAOK2Q9UL54 1235 aa9.9□□□□□ -0.83
CLK1-204ENST00000432425 SLC39A7Q92504 469 aa9.89□□□□□ -0.83
CLK1-204ENST00000432425 TRIM35Q9UPQ4 493 aa9.89□□□□□ -0.83
CLK1-204ENST00000432425 VGFO15240 615 aaPredicted RBP9.88□□□□□ -0.83
CLK1-204ENST00000432425 RGL2O15211 777 aa9.87□□□□□ -0.83
CLK1-204ENST00000432425 GOLGA2Q08379 1002 aa9.86□□□□□ -0.83
CLK1-204ENST00000432425 C7P10643 843 aa9.85□□□□□ -0.83
CLK1-204ENST00000432425 AMER1Q5JTC6 1135 aaPredicted RBP9.85□□□□□ -0.83
CLK1-204ENST00000432425 METRNQ9UJH8 293 aa9.85□□□□□ -0.83
CLK1-204ENST00000432425 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP9.83□□□□□ -0.84
CLK1-204ENST00000432425 IER5LQ5T953 404 aa9.83□□□□□ -0.84
CLK1-204ENST00000432425 ZFP91Q96JP5 570 aaPredicted RBP9.83□□□□□ -0.84
CLK1-204ENST00000432425 CABP2Q9NPB3 220 aa9.8□□□□□ -0.84
CLK1-204ENST00000432425 SEC24BO95487 1268 aa9.8□□□□□ -0.84
CLK1-204ENST00000432425 MKRN3Q13064 507 aaKnown RBP9.8□□□□□ -0.84
CLK1-204ENST00000432425 PCDH10Q9P2E7 1040 aa9.79□□□□□ -0.84
CLK1-204ENST00000432425 STK25O00506 426 aa9.77□□□□□ -0.85
CLK1-204ENST00000432425 BCL11BQ9C0K0 894 aaPredicted RBP9.76□□□□□ -0.85
CLK1-204ENST00000432425 RTN4Q9NQC3 1192 aaKnown RBP9.76□□□□□ -0.85
CLK1-204ENST00000432425 STK24Q9Y6E0 443 aa9.76□□□□□ -0.85
CLK1-204ENST00000432425 PLCG2P16885 1265 aa9.75□□□□□ -0.85
CLK1-204ENST00000432425 DCAF8L2P0C7V8 631 aa9.74□□□□□ -0.85
CLK1-204ENST00000432425 POTEMA6NI47 508 aa9.74□□□□□ -0.85
CLK1-204ENST00000432425 IRX5P78411 483 aaPredicted RBP9.73□□□□□ -0.85
CLK1-204ENST00000432425 COLQQ9Y215 455 aaPredicted RBP9.73□□□□□ -0.85
CLK1-204ENST00000432425 EFCAB3Q8N7B9 438 aa9.72□□□□□ -0.85
CLK1-204ENST00000432425 OCEL1Q9H607 264 aa9.72□□□□□ -0.85
CLK1-204ENST00000432425 POTEFA5A3E0 1075 aa9.71□□□□□ -0.85
CLK1-204ENST00000432425 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP9.71□□□□□ -0.855e-10■■□□□ 13.8
CLK1-204ENST00000432425 CHGAP10645 457 aaKnown RBP9.69□□□□□ -0.86
CLK1-204ENST00000432425 POTEB2H3BUK9 544 aa9.67□□□□□ -0.86
CLK1-204ENST00000432425 HS6ST3Q8IZP7 471 aa9.67□□□□□ -0.86
CLK1-204ENST00000432425 SOX12O15370 315 aa9.67□□□□□ -0.86
CLK1-204ENST00000432425 PDCD7Q8N8D1 485 aaKnown RBP9.65□□□□□ -0.86
CLK1-204ENST00000432425 MAMSTRQ6ZN01 415 aa9.64□□□□□ -0.87
CLK1-204ENST00000432425 ILDR1Q86SU0 546 aaPredicted RBP9.63□□□□□ -0.87
CLK1-204ENST00000432425 NLRP6P59044 892 aa9.62□□□□□ -0.87
CLK1-204ENST00000432425 POTEGQ6S5H5 508 aa9.62□□□□□ -0.87
CLK1-204ENST00000432425 PHF8Q9UPP1 1060 aa9.62□□□□□ -0.87
CLK1-204ENST00000432425 SCUBE2Q9NQ36 999 aa9.61□□□□□ -0.87
CLK1-204ENST00000432425 L3MBTL3Q96JM7 780 aaPredicted RBP9.61□□□□□ -0.87
CLK1-204ENST00000432425 G3V3G9 751 aa9.6□□□□□ -0.87
CLK1-204ENST00000432425 POTEJP0CG39 1038 aa9.6□□□□□ -0.87
CLK1-204ENST00000432425 DPY19L2Q6NUT2 758 aa9.58□□□□□ -0.88
CLK1-204ENST00000432425 MFRPQ9BY79 579 aa9.58□□□□□ -0.88
CLK1-204ENST00000432425 OTUD5Q96G74 571 aa9.57□□□□□ -0.88
CLK1-204ENST00000432425 FBXO22Q8NEZ5 403 aa9.56□□□□□ -0.88
CLK1-204ENST00000432425 MS4A4AQ96JQ5 239 aa9.56□□□□□ -0.88
CLK1-204ENST00000432425 DNAJC5Q9H3Z4 198 aa9.56□□□□□ -0.88
CLK1-204ENST00000432425 BOLA1Q9Y3E2 137 aa9.55□□□□□ -0.88
CLK1-204ENST00000432425 C3orf67Q6ZVT6 689 aa9.54□□□□□ -0.88
CLK1-204ENST00000432425 EIF2AK3Q9NZJ5 1116 aaKnown RBP9.53□□□□□ -0.88
CLK1-204ENST00000432425 RYDENQ9NUL5 291 aaKnown RBP9.51□□□□□ -0.89
CLK1-204ENST00000432425 NKX1-1Q15270 411 aaPredicted RBP9.5□□□□□ -0.89
CLK1-204ENST00000432425 MICALL2Q8IY33 904 aa9.48□□□□□ -0.89
CLK1-204ENST00000432425 SLAIN1Q8ND83 568 aa9.48□□□□□ -0.89
CLK1-204ENST00000432425 BBXQ8WY36 941 aaPredicted RBP9.46□□□□□ -0.89
CLK1-204ENST00000432425 TMEM121BQ9BXQ6 578 aaPredicted RBP9.46□□□□□ -0.89
CLK1-204ENST00000432425 PPP1R37O75864 691 aa9.43□□□□□ -0.9
CLK1-204ENST00000432425 ZBTB4Q9P1Z0 1013 aaPredicted RBP9.42□□□□□ -0.9
CLK1-204ENST00000432425 GTPBP6O43824 516 aaPredicted RBP9.41□□□□□ -0.9
CLK1-204ENST00000432425 SNPHO15079 494 aa9.36□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms