RNA–Protein interactions for RNA: ENST00000412061.3

BRCA1-204, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,312 nt, Biotype non stop decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-204ENST00000412061 ZNF579Q8NAF0 562 aaKnown RBP10.22□□□□□ -0.77
BRCA1-204ENST00000412061 ZRANB1Q9UGI0 708 aa10.22□□□□□ -0.77
BRCA1-204ENST00000412061 CLCN6P51797 869 aa10.18□□□□□ -0.78
BRCA1-204ENST00000412061 CIZ1Q9ULV3 898 aaPredicted RBP10.18□□□□□ -0.78
BRCA1-204ENST00000412061 PLCB2Q00722 1185 aa10.17□□□□□ -0.78
BRCA1-204ENST00000412061 DCBLD2Q96PD2 775 aa10.16□□□□□ -0.78
BRCA1-204ENST00000412061 GALR2O43603 387 aaPredicted RBP10.14□□□□□ -0.79
BRCA1-204ENST00000412061 TRIM41Q8WV44 630 aa10.13□□□□□ -0.79
BRCA1-204ENST00000412061 RGL2O15211 777 aa10.12□□□□□ -0.79
BRCA1-204ENST00000412061 GSE1Q14687 1217 aa10.1□□□□□ -0.79
BRCA1-204ENST00000412061 PHF12Q96QT6 1004 aa10.1□□□□□ -0.79
BRCA1-204ENST00000412061 MNX1P50219 401 aaPredicted RBP10.09□□□□□ -0.79
BRCA1-204ENST00000412061 NUBP1P53384 320 aa10.08□□□□□ -0.8
BRCA1-204ENST00000412061 BBXQ8WY36 941 aaPredicted RBP10.07□□□□□ -0.8
BRCA1-204ENST00000412061 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.07□□□□□ -0.8
BRCA1-204ENST00000412061 DCAF8Q5TAQ9 597 aa10.05□□□□□ -0.8
BRCA1-204ENST00000412061 NPM1P06748 294 aaKnown RBP eCLIP10.04□□□□□ -0.8
BRCA1-204ENST00000412061 HAP1P54257 671 aaPredicted RBP10.04□□□□□ -0.8
BRCA1-204ENST00000412061 PAK3O75914 559 aaPredicted RBP10.03□□□□□ -0.8
BRCA1-204ENST00000412061 FAM212AQ96EL1 285 aa10.03□□□□□ -0.8
BRCA1-204ENST00000412061 POTEB2H3BUK9 544 aa10.02□□□□□ -0.81
BRCA1-204ENST00000412061 PELP1Q8IZL8 1130 aaKnown RBP9.99□□□□□ -0.81
BRCA1-204ENST00000412061 CHGAP10645 457 aaKnown RBP9.98□□□□□ -0.81
BRCA1-204ENST00000412061 OTUD5Q96G74 571 aa9.98□□□□□ -0.81
BRCA1-204ENST00000412061 PAXIP1Q6ZW49 1069 aaPredicted RBP9.96□□□□□ -0.82
BRCA1-204ENST00000412061 RASEFQ8IZ41 740 aa9.95□□□□□ -0.82
BRCA1-204ENST00000412061 TAOK2Q9UL54 1235 aa9.95□□□□□ -0.82
BRCA1-204ENST00000412061 RNF25Q96BH1 459 aaPredicted RBP9.94□□□□□ -0.82
BRCA1-204ENST00000412061 MS4A3Q96HJ5 214 aa9.94□□□□□ -0.82
BRCA1-204ENST00000412061 CFAP44Q96MT7 982 aa9.94□□□□□ -0.82
BRCA1-204ENST00000412061 RIOK3O14730 519 aaKnown RBP9.92□□□□□ -0.82
BRCA1-204ENST00000412061 HS6ST3Q8IZP7 471 aa9.92□□□□□ -0.82
BRCA1-204ENST00000412061 CHRM1P11229 460 aaPredicted RBP9.91□□□□□ -0.82
BRCA1-204ENST00000412061 SPRYD3Q8NCJ5 442 aa9.91□□□□□ -0.82
BRCA1-204ENST00000412061 VSIG10Q8N0Z9 540 aa9.9□□□□□ -0.82
BRCA1-204ENST00000412061 ASTLQ6HA08 431 aaPredicted RBP9.88□□□□□ -0.83
BRCA1-204ENST00000412061 TSPYL2Q9H2G4 693 aaPredicted RBP9.88□□□□□ -0.83
BRCA1-204ENST00000412061 ATMINO43313 823 aaPredicted RBP9.87□□□□□ -0.83
BRCA1-204ENST00000412061 VGFO15240 615 aaPredicted RBP9.86□□□□□ -0.83
BRCA1-204ENST00000412061 DNAJC5Q9H3Z4 198 aa9.85□□□□□ -0.83
BRCA1-204ENST00000412061 PLSCR2Q9NRY7 297 aa9.85□□□□□ -0.83
BRCA1-204ENST00000412061 METRNQ9UJH8 293 aa9.85□□□□□ -0.83
BRCA1-204ENST00000412061 CCDC61Q9Y6R9 512 aa9.85□□□□□ -0.83
BRCA1-204ENST00000412061 POTEJP0CG39 1038 aa9.84□□□□□ -0.83
BRCA1-204ENST00000412061 PYGBP11216 843 aa9.84□□□□□ -0.83
BRCA1-204ENST00000412061 STK25O00506 426 aa9.82□□□□□ -0.84
BRCA1-204ENST00000412061 SLC39A7Q92504 469 aa9.81□□□□□ -0.84
BRCA1-204ENST00000412061 KIF12Q96FN5 646 aa9.81□□□□□ -0.84
BRCA1-204ENST00000412061 SGIP1Q9BQI5 828 aa9.81□□□□□ -0.84
BRCA1-204ENST00000412061 C7P10643 843 aa9.8□□□□□ -0.84
BRCA1-204ENST00000412061 ATN1P54259 1190 aaPredicted RBP9.8□□□□□ -0.84
BRCA1-204ENST00000412061 TRPC6Q9Y210 931 aa9.8□□□□□ -0.84
BRCA1-204ENST00000412061 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP9.77□□□□□ -0.85
BRCA1-204ENST00000412061 POTEMA6NI47 508 aa9.77□□□□□ -0.85
BRCA1-204ENST00000412061 ZFP91Q96JP5 570 aaPredicted RBP9.77□□□□□ -0.85
BRCA1-204ENST00000412061 TSHZ2Q9NRE2 1034 aa9.77□□□□□ -0.85
BRCA1-204ENST00000412061 KDM2AQ9Y2K7 1162 aa9.76□□□□□ -0.85
BRCA1-204ENST00000412061 STK24Q9Y6E0 443 aa9.76□□□□□ -0.85
BRCA1-204ENST00000412061 NKX1-1Q15270 411 aaPredicted RBP9.75□□□□□ -0.85
BRCA1-204ENST00000412061 ZNF467Q7Z7K2 595 aaPredicted RBP9.75□□□□□ -0.85
BRCA1-204ENST00000412061 BCL11BQ9C0K0 894 aaPredicted RBP9.75□□□□□ -0.85
BRCA1-204ENST00000412061 BMP2KQ9NSY1 1161 aaPredicted RBP9.75□□□□□ -0.85
BRCA1-204ENST00000412061 POTEFA5A3E0 1075 aa9.74□□□□□ -0.85
BRCA1-204ENST00000412061 MAP3K13O43283 966 aa9.74□□□□□ -0.85
BRCA1-204ENST00000412061 POTEGQ6S5H5 508 aa9.74□□□□□ -0.85
BRCA1-204ENST00000412061 BCANQ96GW7 911 aa9.73□□□□□ -0.85
BRCA1-204ENST00000412061 GTPBP6O43824 516 aaPredicted RBP9.7□□□□□ -0.86
BRCA1-204ENST00000412061 LCE2DQ5TA82 110 aaPredicted RBP9.69□□□□□ -0.86
BRCA1-204ENST00000412061 RYDENQ9NUL5 291 aaKnown RBP9.69□□□□□ -0.86
BRCA1-204ENST00000412061 PDAP1Q13442 181 aaKnown RBP9.68□□□□□ -0.86
BRCA1-204ENST00000412061 MAMSTRQ6ZN01 415 aa9.68□□□□□ -0.86
BRCA1-204ENST00000412061 TIE1P35590 1138 aa9.67□□□□□ -0.86
BRCA1-204ENST00000412061 PCDHB8Q9UN66 801 aa9.66□□□□□ -0.86
BRCA1-204ENST00000412061 PCDHB13Q9Y5F0 798 aa9.66□□□□□ -0.86
BRCA1-204ENST00000412061 TTLL13PA6NNM8 815 aa9.65□□□□□ -0.86
BRCA1-204ENST00000412061 SCUBE2Q9NQ36 999 aa9.64□□□□□ -0.87
BRCA1-204ENST00000412061 COLQQ9Y215 455 aaPredicted RBP9.64□□□□□ -0.87
BRCA1-204ENST00000412061 PSEN1P49768 467 aa9.62□□□□□ -0.87
BRCA1-204ENST00000412061 FAM163AQ96GL9 167 aaPredicted RBP9.61□□□□□ -0.87
BRCA1-204ENST00000412061 IFNL1Q8IU54 200 aa9.58□□□□□ -0.88
BRCA1-204ENST00000412061 TRIM35Q9UPQ4 493 aa9.58□□□□□ -0.88
BRCA1-204ENST00000412061 SEC24BO95487 1268 aa9.56□□□□□ -0.88
BRCA1-204ENST00000412061 PCDH10Q9P2E7 1040 aa9.53□□□□□ -0.88
BRCA1-204ENST00000412061 IER5LQ5T953 404 aa9.52□□□□□ -0.89
BRCA1-204ENST00000412061 TMEM106CQ9BVX2 250 aa9.51□□□□□ -0.89
BRCA1-204ENST00000412061 MFRPQ9BY79 579 aa9.5□□□□□ -0.89
BRCA1-204ENST00000412061 CABP2Q9NPB3 220 aa9.5□□□□□ -0.89
BRCA1-204ENST00000412061 NBR1Q14596 966 aa9.49□□□□□ -0.89
BRCA1-204ENST00000412061 SOX12O15370 315 aa9.48□□□□□ -0.89
BRCA1-204ENST00000412061 EFCAB3Q8N7B9 438 aa9.48□□□□□ -0.89
BRCA1-204ENST00000412061 NLRP6P59044 892 aa9.47□□□□□ -0.89
BRCA1-204ENST00000412061 IRX5P78411 483 aaPredicted RBP9.44□□□□□ -0.9
BRCA1-204ENST00000412061 PLCG2P16885 1265 aa9.43□□□□□ -0.9
BRCA1-204ENST00000412061 SLAIN1Q8ND83 568 aa9.43□□□□□ -0.9
BRCA1-204ENST00000412061 FBXO22Q8NEZ5 403 aa9.43□□□□□ -0.9
BRCA1-204ENST00000412061 PHF8Q9UPP1 1060 aa9.43□□□□□ -0.9
BRCA1-204ENST00000412061 GOLGA2Q08379 1002 aa9.41□□□□□ -0.9
BRCA1-204ENST00000412061 CADPS2Q86UW7 1296 aa9.41□□□□□ -0.9
BRCA1-204ENST00000412061 WDR70Q9NW82 654 aa9.41□□□□□ -0.9
BRCA1-204ENST00000412061 ST18O60284 1047 aa9.39□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 56.8 ms