RNA–Protein interactions for RNA: ENST00000410517.1

RNU6-1140P-201, Transcript of RNA, U6 small nuclear 1140, pseudogene, humanhuman

BASIC

Gene RNU6-1140P, Length 106 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-1140P-201ENST00000410517 LCE2DQ5TA82 110 aaPredicted RBP9.2□□□□□ -0.94
RNU6-1140P-201ENST00000410517 ASTLQ6HA08 431 aaPredicted RBP9.2□□□□□ -0.94
RNU6-1140P-201ENST00000410517 ATMINO43313 823 aaPredicted RBP9.19□□□□□ -0.94
RNU6-1140P-201ENST00000410517 NPM1P06748 294 aaKnown RBP eCLIP9.19□□□□□ -0.94
RNU6-1140P-201ENST00000410517 MS4A3Q96HJ5 214 aa9.18□□□□□ -0.94
RNU6-1140P-201ENST00000410517 SCUBE2Q9NQ36 999 aa9.17□□□□□ -0.94
RNU6-1140P-201ENST00000410517 MNX1P50219 401 aaPredicted RBP9.09□□□□□ -0.95
RNU6-1140P-201ENST00000410517 ATN1P54259 1190 aaPredicted RBP9.08□□□□□ -0.96
RNU6-1140P-201ENST00000410517 CDAN1Q8IWY9 1227 aa9.06□□□□□ -0.96
RNU6-1140P-201ENST00000410517 TSPYL2Q9H2G4 693 aaPredicted RBP9.03□□□□□ -0.96
RNU6-1140P-201ENST00000410517 SPDYE4A6NLX3 237 aa9.02□□□□□ -0.97
RNU6-1140P-201ENST00000410517 POTEFA5A3E0 1075 aa9.01□□□□□ -0.97
RNU6-1140P-201ENST00000410517 BMP2KQ9NSY1 1161 aaPredicted RBP8.98□□□□□ -0.97
RNU6-1140P-201ENST00000410517 KIF12Q96FN5 646 aa8.96□□□□□ -0.98
RNU6-1140P-201ENST00000410517 SEC24BO95487 1268 aa8.95□□□□□ -0.98
RNU6-1140P-201ENST00000410517 TRPC6Q9Y210 931 aa8.95□□□□□ -0.98
RNU6-1140P-201ENST00000410517 CCDC61Q9Y6R9 512 aa8.95□□□□□ -0.98
RNU6-1140P-201ENST00000410517 COLQQ9Y215 455 aaPredicted RBP8.93□□□□□ -0.98
RNU6-1140P-201ENST00000410517 TIE1P35590 1138 aa8.9□□□□□ -0.98
RNU6-1140P-201ENST00000410517 ST18O60284 1047 aa8.89□□□□□ -0.99
RNU6-1140P-201ENST00000410517 MAP3K13O43283 966 aa8.88□□□□□ -0.99
RNU6-1140P-201ENST00000410517 MMRN1Q13201 1228 aa8.88□□□□□ -0.99
RNU6-1140P-201ENST00000410517 SLAIN1Q8ND83 568 aa8.87□□□□□ -0.99
RNU6-1140P-201ENST00000410517 TTLL13PA6NNM8 815 aa8.86□□□□□ -0.99
RNU6-1140P-201ENST00000410517 SPNS2Q8IVW8 549 aa8.85□□□□□ -0.99
RNU6-1140P-201ENST00000410517 TRIM35Q9UPQ4 493 aa8.81□□□□□ -1
RNU6-1140P-201ENST00000410517 IER5LQ5T953 404 aa8.8□□□□□ -1
RNU6-1140P-201ENST00000410517 CSRNP3Q8WYN3 585 aa8.77□□□□□ -1.01
RNU6-1140P-201ENST00000410517 RASEFQ8IZ41 740 aa8.76□□□□□ -1.01
RNU6-1140P-201ENST00000410517 PLEKHG5O94827 1062 aa8.73□□□□□ -1.01
RNU6-1140P-201ENST00000410517 PLCG2P16885 1265 aa8.73□□□□□ -1.01
RNU6-1140P-201ENST00000410517 TMEM121BQ9BXQ6 578 aaPredicted RBP8.73□□□□□ -1.01
RNU6-1140P-201ENST00000410517 PCDHB13Q9Y5F0 798 aa8.73□□□□□ -1.01
RNU6-1140P-201ENST00000410517 MARVELD3Q96A59 401 aa8.72□□□□□ -1.01
RNU6-1140P-201ENST00000410517 MIER1Q8N108 512 aa8.71□□□□□ -1.02
RNU6-1140P-201ENST00000410517 SNPHO15079 494 aa8.69□□□□□ -1.02
RNU6-1140P-201ENST00000410517 SGIP1Q9BQI5 828 aa8.69□□□□□ -1.02
RNU6-1140P-201ENST00000410517 TMEM106CQ9BVX2 250 aa8.68□□□□□ -1.02
RNU6-1140P-201ENST00000410517 IFNL1Q8IU54 200 aa8.65□□□□□ -1.02
RNU6-1140P-201ENST00000410517 PROM2Q8N271 834 aa8.64□□□□□ -1.03
RNU6-1140P-201ENST00000410517 EIF2AK3Q9NZJ5 1116 aaKnown RBP8.64□□□□□ -1.03
RNU6-1140P-201ENST00000410517 IRX5P78411 483 aaPredicted RBP8.63□□□□□ -1.03
RNU6-1140P-201ENST00000410517 EMP3P54852 163 aa8.61□□□□□ -1.03
RNU6-1140P-201ENST00000410517 OCEL1Q9H607 264 aa8.61□□□□□ -1.03
RNU6-1140P-201ENST00000410517 PLCD3Q8N3E9 789 aa8.57□□□□□ -1.04
RNU6-1140P-201ENST00000410517 KRTAP3-3Q9BYR6 98 aa8.56□□□□□ -1.04
RNU6-1140P-201ENST00000410517 KRTAP3-2Q9BYR7 98 aa8.56□□□□□ -1.04
RNU6-1140P-201ENST00000410517 FAM205CA6NFA0 338 aa8.54□□□□□ -1.04
RNU6-1140P-201ENST00000410517 HS3ST6Q96QI5 342 aa8.54□□□□□ -1.04
RNU6-1140P-201ENST00000410517 POTEB3A0JP26 581 aa8.53□□□□□ -1.04
RNU6-1140P-201ENST00000410517 NUBP1P53384 320 aa8.53□□□□□ -1.04
RNU6-1140P-201ENST00000410517 POTEBQ6S5H4 581 aa8.53□□□□□ -1.04
RNU6-1140P-201ENST00000410517 FAM212AQ96EL1 285 aa8.52□□□□□ -1.05
RNU6-1140P-201ENST00000410517 C3orf67Q6ZVT6 689 aa8.51□□□□□ -1.05
RNU6-1140P-201ENST00000410517 ZBTB47Q9UFB7 747 aaPredicted RBP8.5□□□□□ -1.05
RNU6-1140P-201ENST00000410517 PCDHB8Q9UN66 801 aa8.44□□□□□ -1.06
RNU6-1140P-201ENST00000410517 PYGBP11216 843 aa8.43□□□□□ -1.06
RNU6-1140P-201ENST00000410517 L3MBTL3Q96JM7 780 aaPredicted RBP8.43□□□□□ -1.06
RNU6-1140P-201ENST00000410517 EHMT2Q96KQ7 1210 aa8.43□□□□□ -1.06
RNU6-1140P-201ENST00000410517 PDCD7Q8N8D1 485 aaKnown RBP8.42□□□□□ -1.06
RNU6-1140P-201ENST00000410517 DCAF8Q5TAQ9 597 aa8.41□□□□□ -1.06
RNU6-1140P-201ENST00000410517 RNF166Q96A37 237 aaPredicted RBP8.4□□□□□ -1.06
RNU6-1140P-201ENST00000410517 GOLGA2Q08379 1002 aa8.39□□□□□ -1.07
RNU6-1140P-201ENST00000410517 MKRN3Q13064 507 aaKnown RBP8.38□□□□□ -1.07
RNU6-1140P-201ENST00000410517 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP8.35□□□□□ -1.07
RNU6-1140P-201ENST00000410517 ERBB3P21860 1342 aa8.33□□□□□ -1.08
RNU6-1140P-201ENST00000410517 ZNF710Q8N1W2 664 aa8.32□□□□□ -1.08
RNU6-1140P-201ENST00000410517 MYT1LQ9UL68 1186 aa8.32□□□□□ -1.08
RNU6-1140P-201ENST00000410517 HOXB3P14651 431 aaPredicted RBP8.3□□□□□ -1.08
RNU6-1140P-201ENST00000410517 HOXB1P14653 301 aaPredicted RBP8.29□□□□□ -1.08
RNU6-1140P-201ENST00000410517 G3V3G9 751 aa8.27□□□□□ -1.09
RNU6-1140P-201ENST00000410517 DPY19L2Q6NUT2 758 aa8.27□□□□□ -1.09
RNU6-1140P-201ENST00000410517 VARS2Q5ST30 1063 aaKnown RBP8.26□□□□□ -1.09
RNU6-1140P-201ENST00000410517 ZNF467Q7Z7K2 595 aaPredicted RBP8.26□□□□□ -1.09
RNU6-1140P-201ENST00000410517 DOK7Q18PE1 504 aa8.24□□□□□ -1.09
RNU6-1140P-201ENST00000410517 PSEN1P49768 467 aa8.23□□□□□ -1.09
RNU6-1140P-201ENST00000410517 BOLA1Q9Y3E2 137 aa8.23□□□□□ -1.09
RNU6-1140P-201ENST00000410517 RIMBP2O15034 1052 aa8.2□□□□□ -1.1
RNU6-1140P-201ENST00000410517 ILDR1Q86SU0 546 aaPredicted RBP8.19□□□□□ -1.1
RNU6-1140P-201ENST00000410517 PTGER2P43116 358 aa8.17□□□□□ -1.1
RNU6-1140P-201ENST00000410517 ZNF687Q8N1G0 1237 aa8.17□□□□□ -1.1
RNU6-1140P-201ENST00000410517 GSE1Q14687 1217 aa8.16□□□□□ -1.1
RNU6-1140P-201ENST00000410517 ANKRD13DQ6ZTN6 518 aa8.16□□□□□ -1.1
RNU6-1140P-201ENST00000410517 CABP2Q9NPB3 220 aa8.14□□□□□ -1.11
RNU6-1140P-201ENST00000410517 CHRM1P11229 460 aaPredicted RBP8.13□□□□□ -1.11
RNU6-1140P-201ENST00000410517 PDAP1Q13442 181 aaKnown RBP8.13□□□□□ -1.11
RNU6-1140P-201ENST00000410517 KLHL34Q8N239 644 aa8.11□□□□□ -1.11
RNU6-1140P-201ENST00000410517 ZSWIM6Q9HCJ5 1215 aa8.09□□□□□ -1.11
RNU6-1140P-201ENST00000410517 PLA2G2EQ9NZK7 142 aa8.09□□□□□ -1.11
RNU6-1140P-201ENST00000410517 GPR153Q6NV75 609 aa8.07□□□□□ -1.12
RNU6-1140P-201ENST00000410517 LSM11P83369 360 aaKnown RBP eCLIP8.04□□□□□ -1.12
RNU6-1140P-201ENST00000410517 FKBP8Q14318 412 aa8.03□□□□□ -1.12
RNU6-1140P-201ENST00000410517 ARSIQ5FYB1 569 aa8.03□□□□□ -1.12
RNU6-1140P-201ENST00000410517 TMEM92Q6UXU6 159 aa8.02□□□□□ -1.13
RNU6-1140P-201ENST00000410517 FBXO3Q9UK99 471 aa8.01□□□□□ -1.13
RNU6-1140P-201ENST00000410517 ZNF316A6NFI3 1004 aaPredicted RBP7.99□□□□□ -1.13
RNU6-1140P-201ENST00000410517 MICALL2Q8IY33 904 aa7.99□□□□□ -1.13
RNU6-1140P-201ENST00000410517 HCSTQ9UBK5 93 aa7.99□□□□□ -1.13
RNU6-1140P-201ENST00000410517 KHSRPQ92945 711 aaKnown RBP eCLIP7.98□□□□□ -1.13
RNU6-1140P-201ENST00000410517 EFCAB3Q8N7B9 438 aa7.97□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms