RNA–Protein interactions for RNA: ENST00000396464.7

GABPB1-204, Transcript of GA binding protein transcription factor subunit beta 1, humanhuman

TSL 1 (best) BASIC

Gene GABPB1, Length 1,401 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GABPB1-204ENST00000396464 MS4A3Q96HJ5 214 aa11.42□□□□□ -0.58
GABPB1-204ENST00000396464 CCDC61Q9Y6R9 512 aa11.4□□□□□ -0.58
GABPB1-204ENST00000396464 RASEFQ8IZ41 740 aa11.39□□□□□ -0.59
GABPB1-204ENST00000396464 KIF12Q96FN5 646 aa11.35□□□□□ -0.59
GABPB1-204ENST00000396464 FAM212AQ96EL1 285 aa11.32□□□□□ -0.6
GABPB1-204ENST00000396464 MAP3K13O43283 966 aa11.3□□□□□ -0.6
GABPB1-204ENST00000396464 SLC24A1O60721 1099 aa11.3□□□□□ -0.6
GABPB1-204ENST00000396464 ASTLQ6HA08 431 aaPredicted RBP11.3□□□□□ -0.6
GABPB1-204ENST00000396464 ATMINO43313 823 aaPredicted RBP11.29□□□□□ -0.6
GABPB1-204ENST00000396464 NUBP1P53384 320 aa11.28□□□□□ -0.6
GABPB1-204ENST00000396464 SLC39A7Q92504 469 aa11.28□□□□□ -0.6
GABPB1-204ENST00000396464 PELP1Q8IZL8 1130 aaKnown RBP11.27□□□□□ -0.6
GABPB1-204ENST00000396464 C7P10643 843 aa11.26□□□□□ -0.61
GABPB1-204ENST00000396464 KLHL34Q8N239 644 aa11.26□□□□□ -0.61
GABPB1-204ENST00000396464 METRNQ9UJH8 293 aa11.26□□□□□ -0.61
GABPB1-204ENST00000396464 DCAF8Q5TAQ9 597 aa11.24□□□□□ -0.61
GABPB1-204ENST00000396464 PCDHB13Q9Y5F0 798 aa11.24□□□□□ -0.61
GABPB1-204ENST00000396464 TIE1P35590 1138 aa11.21□□□□□ -0.61
GABPB1-204ENST00000396464 VASPP50552 380 aaPredicted RBP11.21□□□□□ -0.61
GABPB1-204ENST00000396464 ATN1P54259 1190 aaPredicted RBP11.21□□□□□ -0.61
GABPB1-204ENST00000396464 SGIP1Q9BQI5 828 aa11.21□□□□□ -0.61
GABPB1-204ENST00000396464 BMP2KQ9NSY1 1161 aaPredicted RBP11.2□□□□□ -0.62
GABPB1-204ENST00000396464 TRPC6Q9Y210 931 aa11.18□□□□□ -0.62
GABPB1-204ENST00000396464 POTEB2H3BUK9 544 aa11.16□□□□□ -0.62
GABPB1-204ENST00000396464 TTLL13PA6NNM8 815 aa11.14□□□□□ -0.63
GABPB1-204ENST00000396464 SEC24BO95487 1268 aa11.14□□□□□ -0.63
GABPB1-204ENST00000396464 MAMSTRQ6ZN01 415 aa11.14□□□□□ -0.63
GABPB1-204ENST00000396464 OTUD5Q96G74 571 aa11.14□□□□□ -0.63
GABPB1-204ENST00000396464 IFNL1Q8IU54 200 aa11.12□□□□□ -0.63
GABPB1-204ENST00000396464 PYGBP11216 843 aa11.11□□□□□ -0.63
GABPB1-204ENST00000396464 GSE1Q14687 1217 aa11.11□□□□□ -0.63
GABPB1-204ENST00000396464 TRIM35Q9UPQ4 493 aa11.09□□□□□ -0.63
GABPB1-204ENST00000396464 TMEM106CQ9BVX2 250 aa11.09□□□□□ -0.63
GABPB1-204ENST00000396464 SCUBE2Q9NQ36 999 aa11.09□□□□□ -0.63
GABPB1-204ENST00000396464 IER5LQ5T953 404 aa11.05□□□□□ -0.64
GABPB1-204ENST00000396464 SPOCK2Q92563 424 aa11.01□□□□□ -0.65
GABPB1-204ENST00000396464 PCDHB8Q9UN66 801 aa11.01□□□□□ -0.65
GABPB1-204ENST00000396464 POTEJP0CG39 1038 aa11□□□□□ -0.65
GABPB1-204ENST00000396464 PLCG2P16885 1265 aa11□□□□□ -0.65
GABPB1-204ENST00000396464 ZNF467Q7Z7K2 595 aaPredicted RBP11□□□□□ -0.65
GABPB1-204ENST00000396464 COLQQ9Y215 455 aaPredicted RBP11□□□□□ -0.65
GABPB1-204ENST00000396464 POTEFA5A3E0 1075 aa10.99□□□□□ -0.65
GABPB1-204ENST00000396464 CIZ1Q9ULV3 898 aaPredicted RBP10.99□□□□□ -0.65
GABPB1-204ENST00000396464 IFNLR1Q8IU57 520 aaPredicted RBP10.97□□□□□ -0.65
GABPB1-204ENST00000396464 GOLGA2Q08379 1002 aa10.96□□□□□ -0.65
GABPB1-204ENST00000396464 CHRM1P11229 460 aaPredicted RBP10.92□□□□□ -0.66
GABPB1-204ENST00000396464 FAM163AQ96GL9 167 aaPredicted RBP10.89□□□□□ -0.67
GABPB1-204ENST00000396464 OCEL1Q9H607 264 aa10.89□□□□□ -0.67
GABPB1-204ENST00000396464 MKRN3Q13064 507 aaKnown RBP10.88□□□□□ -0.67
GABPB1-204ENST00000396464 POTEMA6NI47 508 aa10.87□□□□□ -0.67
GABPB1-204ENST00000396464 PSEN1P49768 467 aa10.87□□□□□ -0.67
GABPB1-204ENST00000396464 IRX5P78411 483 aaPredicted RBP10.87□□□□□ -0.67
GABPB1-204ENST00000396464 POTEGQ6S5H5 508 aa10.85□□□□□ -0.67
GABPB1-204ENST00000396464 PDAP1Q13442 181 aaKnown RBP10.84□□□□□ -0.67
GABPB1-204ENST00000396464 SLAIN1Q8ND83 568 aa10.84□□□□□ -0.67
GABPB1-204ENST00000396464 PLSCR2Q9NRY7 297 aa10.82□□□□□ -0.68
GABPB1-204ENST00000396464 TRIM41Q8WV44 630 aa10.81□□□□□ -0.68
GABPB1-204ENST00000396464 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.79□□□□□ -0.68
GABPB1-204ENST00000396464 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.78□□□□□ -0.68
GABPB1-204ENST00000396464 L3MBTL3Q96JM7 780 aaPredicted RBP10.75□□□□□ -0.69
GABPB1-204ENST00000396464 CABP2Q9NPB3 220 aa10.75□□□□□ -0.69
GABPB1-204ENST00000396464 C3orf67Q6ZVT6 689 aa10.75□□□□□ -0.69
GABPB1-204ENST00000396464 G3V3G9 751 aa10.73□□□□□ -0.69
GABPB1-204ENST00000396464 PCDH10Q9P2E7 1040 aa10.72□□□□□ -0.69
GABPB1-204ENST00000396464 PDCD7Q8N8D1 485 aaKnown RBP10.71□□□□□ -0.69
GABPB1-204ENST00000396464 SNPHO15079 494 aa10.69□□□□□ -0.7
GABPB1-204ENST00000396464 LCE2DQ5TA82 110 aaPredicted RBP10.68□□□□□ -0.7
GABPB1-204ENST00000396464 RIOK3O14730 519 aaKnown RBP10.65□□□□□ -0.7
GABPB1-204ENST00000396464 ST18O60284 1047 aa10.63□□□□□ -0.71
GABPB1-204ENST00000396464 RTN4Q9NQC3 1192 aaKnown RBP10.62□□□□□ -0.71
GABPB1-204ENST00000396464 EFCAB3Q8N7B9 438 aa10.6□□□□□ -0.71
GABPB1-204ENST00000396464 BOLA1Q9Y3E2 137 aa10.6□□□□□ -0.71
GABPB1-204ENST00000396464 VGFO15240 615 aaPredicted RBP10.59□□□□□ -0.71
GABPB1-204ENST00000396464 DPY19L2Q6NUT2 758 aa10.59□□□□□ -0.71
GABPB1-204ENST00000396464 TAOK2Q9UL54 1235 aa10.59□□□□□ -0.71
GABPB1-204ENST00000396464 ILDR1Q86SU0 546 aaPredicted RBP10.58□□□□□ -0.72
GABPB1-204ENST00000396464 TMEM121BQ9BXQ6 578 aaPredicted RBP10.58□□□□□ -0.72
GABPB1-204ENST00000396464 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.56□□□□□ -0.72
GABPB1-204ENST00000396464 CDAN1Q8IWY9 1227 aa10.56□□□□□ -0.72
GABPB1-204ENST00000396464 ZFP91Q96JP5 570 aaPredicted RBP10.56□□□□□ -0.72
GABPB1-204ENST00000396464 RNF25Q96BH1 459 aaPredicted RBP10.54□□□□□ -0.72
GABPB1-204ENST00000396464 SOX12O15370 315 aa10.52□□□□□ -0.73
GABPB1-204ENST00000396464 AMER1Q5JTC6 1135 aaPredicted RBP10.52□□□□□ -0.73
GABPB1-204ENST00000396464 ECM2O94769 699 aaPredicted RBP10.5□□□□□ -0.73
GABPB1-204ENST00000396464 MARVELD3Q96A59 401 aa10.5□□□□□ -0.73
GABPB1-204ENST00000396464 EMP3P54852 163 aa10.48□□□□□ -0.73
GABPB1-204ENST00000396464 BCL11BQ9C0K0 894 aaPredicted RBP10.47□□□□□ -0.73
GABPB1-204ENST00000396464 STK24Q9Y6E0 443 aa10.47□□□□□ -0.73
GABPB1-204ENST00000396464 ZNF710Q8N1W2 664 aa10.46□□□□□ -0.74
GABPB1-204ENST00000396464 PHF8Q9UPP1 1060 aa10.45□□□□□ -0.74
GABPB1-204ENST00000396464 STK25O00506 426 aa10.44□□□□□ -0.74
GABPB1-204ENST00000396464 NLRP6P59044 892 aa10.43□□□□□ -0.74
GABPB1-204ENST00000396464 MICALL2Q8IY33 904 aa10.43□□□□□ -0.74
GABPB1-204ENST00000396464 DOK7Q18PE1 504 aa10.42□□□□□ -0.74
GABPB1-204ENST00000396464 RIMBP2O15034 1052 aa10.41□□□□□ -0.74
GABPB1-204ENST00000396464 FAM205CA6NFA0 338 aa10.38□□□□□ -0.75
GABPB1-204ENST00000396464 MS4A4AQ96JQ5 239 aa10.38□□□□□ -0.75
GABPB1-204ENST00000396464 PKD2Q13563 968 aa10.36□□□□□ -0.75
GABPB1-204ENST00000396464 HOXB3P14651 431 aaPredicted RBP10.35□□□□□ -0.75
GABPB1-204ENST00000396464 RGL2O15211 777 aa10.34□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 57.2 ms