RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 CASC1Q6TDU7 716 aa16.85■□□□□ 0.29
CCDC88C-204ENST00000389857 ZBTB7CA1YPR0 619 aa16.85■□□□□ 0.29
CCDC88C-204ENST00000389857 C14orf37Q86TY3 774 aa16.82■□□□□ 0.28
CCDC88C-204ENST00000389857 SCRIBQ14160 1630 aa16.82■□□□□ 0.28
CCDC88C-204ENST00000389857 TNNT2P45379 298 aaPredicted RBP16.81■□□□□ 0.28
CCDC88C-204ENST00000389857 MTUS2Q5JR59 1369 aa16.8■□□□□ 0.28
CCDC88C-204ENST00000389857 PPP1R15AO75807 674 aaPredicted RBP16.8■□□□□ 0.28
CCDC88C-204ENST00000389857 DCAF1Q9Y4B6 1507 aa16.78■□□□□ 0.28
CCDC88C-204ENST00000389857 PTMAP06454 111 aaKnown RBP16.76■□□□□ 0.27
CCDC88C-204ENST00000389857 CFAP53Q96M91 514 aa16.76■□□□□ 0.27
CCDC88C-204ENST00000389857 EIF4G2P78344 907 aaKnown RBP eCLIP16.75■□□□□ 0.271e-8■■■■■ 46.2
CCDC88C-204ENST00000389857 HAP1P54257 671 aaPredicted RBP16.73■□□□□ 0.27
CCDC88C-204ENST00000389857 CDCA8Q53HL2 280 aa16.7■□□□□ 0.26
CCDC88C-204ENST00000389857 IRX6P78412 446 aaPredicted RBP16.7■□□□□ 0.26
CCDC88C-204ENST00000389857 DNTTIP2Q5QJE6 756 aaKnown RBP16.69■□□□□ 0.26
CCDC88C-204ENST00000389857 CHMP7Q8WUX9 453 aaPredicted RBP16.69■□□□□ 0.26
CCDC88C-204ENST00000389857 PLEKHG5O94827 1062 aa16.69■□□□□ 0.26
CCDC88C-204ENST00000389857 FTSJ3Q8IY81 847 aaKnown RBP16.69■□□□□ 0.26
CCDC88C-204ENST00000389857 GOLGA6L6A8MZA4 724 aa16.68■□□□□ 0.26
CCDC88C-204ENST00000389857 RSF1Q96T23 1441 aaPredicted RBP16.66■□□□□ 0.26
CCDC88C-204ENST00000389857 TULP1O00294 542 aaPredicted RBP16.65■□□□□ 0.26
CCDC88C-204ENST00000389857 ZCCHC6Q5VYS8 1495 aaKnown RBP16.64■□□□□ 0.25
CCDC88C-204ENST00000389857 KNSTRNQ9Y448 316 aa16.64■□□□□ 0.25
CCDC88C-204ENST00000389857 CHMP4BQ9H444 224 aaKnown RBP16.62■□□□□ 0.25
CCDC88C-204ENST00000389857 MAPK8IP3Q9UPT6 1336 aa16.6■□□□□ 0.25
CCDC88C-204ENST00000389857 PPM1GO15355 546 aaPredicted RBP16.59■□□□□ 0.25
CCDC88C-204ENST00000389857 RRP7BPQ9NSQ0 103 aa16.59■□□□□ 0.25
CCDC88C-204ENST00000389857 NPHP1O15259 732 aa16.58■□□□□ 0.25
CCDC88C-204ENST00000389857 SENP3Q9H4L4 574 aaPredicted RBP16.58■□□□□ 0.24
CCDC88C-204ENST00000389857 TPRNQ4KMQ1 711 aa16.57■□□□□ 0.24
CCDC88C-204ENST00000389857 ERICH6BQ5W0A0 696 aa16.57■□□□□ 0.24
CCDC88C-204ENST00000389857 NRDCO43847 1150 aa16.56■□□□□ 0.24
CCDC88C-204ENST00000389857 NUDCQ9Y266 331 aa16.56■□□□□ 0.24
CCDC88C-204ENST00000389857 ARID4BQ4LE39 1312 aaPredicted RBP16.56■□□□□ 0.24
CCDC88C-204ENST00000389857 MIER1Q8N108 512 aa16.56■□□□□ 0.24
CCDC88C-204ENST00000389857 CLIP1P30622 1438 aa16.56■□□□□ 0.24
CCDC88C-204ENST00000389857 HIRIP3Q9BW71 556 aaPredicted RBP16.56■□□□□ 0.24
CCDC88C-204ENST00000389857 LAS1LQ9Y4W2 734 aaKnown RBP16.55■□□□□ 0.24
CCDC88C-204ENST00000389857 PLEKHD1A6NEE1 506 aa16.55■□□□□ 0.24
CCDC88C-204ENST00000389857 KCNH8Q96L42 1107 aa16.54■□□□□ 0.24
CCDC88C-204ENST00000389857 MS4A1P11836 297 aa16.54■□□□□ 0.24
CCDC88C-204ENST00000389857 PNNQ9H307 717 aaKnown RBP16.54■□□□□ 0.24
CCDC88C-204ENST00000389857 FGD1P98174 961 aa16.53■□□□□ 0.24
CCDC88C-204ENST00000389857 OS9Q13438 667 aaPredicted RBP16.53■□□□□ 0.24
CCDC88C-204ENST00000389857 HSP90AB1P08238 724 aaKnown RBP16.52■□□□□ 0.24
CCDC88C-204ENST00000389857 RGL3Q3MIN7 710 aa16.52■□□□□ 0.24
CCDC88C-204ENST00000389857 GOLGA2Q08379 1002 aa16.51■□□□□ 0.23
CCDC88C-204ENST00000389857 NAP1L5Q96NT1 182 aaPredicted RBP16.5■□□□□ 0.23
CCDC88C-204ENST00000389857 PLCB2Q00722 1185 aa16.5■□□□□ 0.23
CCDC88C-204ENST00000389857 CCDC180Q9P1Z9 1646 aa16.49■□□□□ 0.23
CCDC88C-204ENST00000389857 KCNJ4P48050 445 aa16.49■□□□□ 0.23
CCDC88C-204ENST00000389857 CARD11Q9BXL7 1154 aa16.48■□□□□ 0.23
CCDC88C-204ENST00000389857 POGKQ9P215 609 aa16.47■□□□□ 0.23
CCDC88C-204ENST00000389857 CHAF1AQ13111 956 aaPredicted RBP16.46■□□□□ 0.23
CCDC88C-204ENST00000389857 GOLGA3Q08378 1498 aa16.46■□□□□ 0.23
CCDC88C-204ENST00000389857 NAP1L2Q9ULW6 460 aaPredicted RBP16.46■□□□□ 0.22
CCDC88C-204ENST00000389857 TAOK2Q9UL54 1235 aa16.45■□□□□ 0.22
CCDC88C-204ENST00000389857 GOLGA6L4A6NEF3 574 aa16.44■□□□□ 0.22
CCDC88C-204ENST00000389857 NEUROD2Q15784 382 aa16.44■□□□□ 0.22
CCDC88C-204ENST00000389857 L1TD1Q5T7N2 865 aaKnown RBP16.44■□□□□ 0.22
CCDC88C-204ENST00000389857 LMOD2Q6P5Q4 547 aa16.43■□□□□ 0.22
CCDC88C-204ENST00000389857 MCCP23508 829 aa16.42■□□□□ 0.22
CCDC88C-204ENST00000389857 FRAT1Q92837 279 aaPredicted RBP16.42■□□□□ 0.22
CCDC88C-204ENST00000389857 SUPT16HQ9Y5B9 1047 aaKnown RBP16.42■□□□□ 0.22
CCDC88C-204ENST00000389857 CFAP44Q96MT7 982 aa16.42■□□□□ 0.22
CCDC88C-204ENST00000389857 CFDP1Q9UEE9 299 aaPredicted RBP16.42■□□□□ 0.22
CCDC88C-204ENST00000389857 EEA1Q15075 1411 aa16.41■□□□□ 0.22
CCDC88C-204ENST00000389857 PPP4R2Q9NY27 417 aa16.41■□□□□ 0.22
CCDC88C-204ENST00000389857 HSCBQ8IWL3 235 aa16.4■□□□□ 0.22
CCDC88C-204ENST00000389857 RGS3P49796 1198 aa16.4■□□□□ 0.22
CCDC88C-204ENST00000389857 CLSTN1O94985 981 aa16.39■□□□□ 0.21
CCDC88C-204ENST00000389857 NOP58Q9Y2X3 529 aaKnown RBP16.38■□□□□ 0.21
CCDC88C-204ENST00000389857 U2SURPO15042 1029 aaKnown RBP16.36■□□□□ 0.21
CCDC88C-204ENST00000389857 MSNP26038 577 aaKnown RBP16.35■□□□□ 0.21
CCDC88C-204ENST00000389857 DRC7Q8IY82 874 aa16.35■□□□□ 0.21
CCDC88C-204ENST00000389857 KANK1Q14678 1352 aa16.34■□□□□ 0.21
CCDC88C-204ENST00000389857 HDGFP51858 240 aaKnown RBP16.33■□□□□ 0.21
CCDC88C-204ENST00000389857 KIAA2012Q0VF49 1180 aa16.33■□□□□ 0.21
CCDC88C-204ENST00000389857 CC2D1BQ5T0F9 858 aaKnown RBP16.33■□□□□ 0.2
CCDC88C-204ENST00000389857 CEP162Q5TB80 1403 aa16.33■□□□□ 0.2
CCDC88C-204ENST00000389857 GNL2Q13823 731 aaKnown RBP16.32■□□□□ 0.2
CCDC88C-204ENST00000389857 SENP3-EIF4A1A0A087X0R7 540 aa16.31■□□□□ 0.2
CCDC88C-204ENST00000389857 TMF1P82094 1093 aa16.31■□□□□ 0.2
CCDC88C-204ENST00000389857 RB1CC1Q8TDY2 1594 aa16.3■□□□□ 0.2
CCDC88C-204ENST00000389857 PTMSP20962 102 aa16.3■□□□□ 0.2
CCDC88C-204ENST00000389857 ISY1Q9ULR0 285 aaKnown RBP16.28■□□□□ 0.2
CCDC88C-204ENST00000389857 NCBP3Q53F19 620 aaKnown RBP16.27■□□□□ 0.2
CCDC88C-204ENST00000389857 KIF27Q86VH2 1401 aa16.27■□□□□ 0.19
CCDC88C-204ENST00000389857 RTF1Q92541 710 aaKnown RBP16.27■□□□□ 0.19
CCDC88C-204ENST00000389857 KIAA1211Q6ZU35 1233 aa16.24■□□□□ 0.19
CCDC88C-204ENST00000389857 CEP164Q9UPV0 1460 aa16.24■□□□□ 0.19
CCDC88C-204ENST00000389857 RTN4Q9NQC3 1192 aaKnown RBP16.24■□□□□ 0.19
CCDC88C-204ENST00000389857 SRPK2P78362 688 aaKnown RBP16.22■□□□□ 0.19
CCDC88C-204ENST00000389857 HTATSF1O43719 755 aaKnown RBP16.22■□□□□ 0.19
CCDC88C-204ENST00000389857 NOC3LQ8WTT2 800 aaKnown RBP16.22■□□□□ 0.19
CCDC88C-204ENST00000389857 CCNB3Q8WWL7 1395 aa16.22■□□□□ 0.19
CCDC88C-204ENST00000389857 MORC1Q86VD1 984 aa16.21■□□□□ 0.19
CCDC88C-204ENST00000389857 ERCC6Q03468 1493 aa16.21■□□□□ 0.19
CCDC88C-204ENST00000389857 IPO8O15397 1037 aaKnown RBP16.21■□□□□ 0.18
CCDC88C-204ENST00000389857 CALD1Q05682 793 aaKnown RBP16.19■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms