RNA–Protein interactions for RNA: ENST00000384622.1

RNU6-540P-201, Transcript of RNA, U6 small nuclear 540, pseudogene, humanhuman

BASIC

Gene RNU6-540P, Length 101 nt, Biotype snRNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-540P-201ENST00000384622 KRTAP3-2Q9BYR7 98 aa4.72□□□□□ -1.65
RNU6-540P-201ENST00000384622 PAK3O75914 559 aaPredicted RBP4.71□□□□□ -1.66
RNU6-540P-201ENST00000384622 RNF166Q96A37 237 aaPredicted RBP4.71□□□□□ -1.66
RNU6-540P-201ENST00000384622 POTEFA5A3E0 1075 aa4.7□□□□□ -1.66
RNU6-540P-201ENST00000384622 SSUH2Q9Y2M2 353 aa4.68□□□□□ -1.66
RNU6-540P-201ENST00000384622 ATN1P54259 1190 aaPredicted RBP4.67□□□□□ -1.66
RNU6-540P-201ENST00000384622 SEC24BO95487 1268 aa4.64□□□□□ -1.67
RNU6-540P-201ENST00000384622 FBLN2P98095 1184 aa4.64□□□□□ -1.67
RNU6-540P-201ENST00000384622 MS4A3Q96HJ5 214 aa4.64□□□□□ -1.67
RNU6-540P-201ENST00000384622 SNPHO15079 494 aa4.63□□□□□ -1.67
RNU6-540P-201ENST00000384622 EMP3P54852 163 aa4.63□□□□□ -1.67
RNU6-540P-201ENST00000384622 HS3ST6Q96QI5 342 aa4.61□□□□□ -1.67
RNU6-540P-201ENST00000384622 PABPN1Q86U42 306 aaKnown RBP eCLIP4.6□□□□□ -1.67
RNU6-540P-201ENST00000384622 FAM205CA6NFA0 338 aa4.59□□□□□ -1.67
RNU6-540P-201ENST00000384622 MYT1LQ9UL68 1186 aa4.59□□□□□ -1.67
RNU6-540P-201ENST00000384622 COLQQ9Y215 455 aaPredicted RBP4.59□□□□□ -1.67
RNU6-540P-201ENST00000384622 POTEB3A0JP26 581 aa4.58□□□□□ -1.68
RNU6-540P-201ENST00000384622 POTEBQ6S5H4 581 aa4.58□□□□□ -1.68
RNU6-540P-201ENST00000384622 PLA2G2EQ9NZK7 142 aa4.53□□□□□ -1.68
RNU6-540P-201ENST00000384622 BMP2KQ9NSY1 1161 aaPredicted RBP4.51□□□□□ -1.69
RNU6-540P-201ENST00000384622 IRX2Q9BZI1 471 aaPredicted RBP4.5□□□□□ -1.69
RNU6-540P-201ENST00000384622 CREBZFQ9NS37 354 aa4.5□□□□□ -1.69
RNU6-540P-201ENST00000384622 NPM1P06748 294 aaKnown RBP eCLIP4.45□□□□□ -1.7
RNU6-540P-201ENST00000384622 LOC100996750A0A140TA64 210 aa4.44□□□□□ -1.7
RNU6-540P-201ENST00000384622 TIE1P35590 1138 aa4.44□□□□□ -1.7
RNU6-540P-201ENST00000384622 IER5LQ5T953 404 aa4.44□□□□□ -1.7
RNU6-540P-201ENST00000384622 KRTAP4-6Q9BYQ5 205 aa4.44□□□□□ -1.7
RNU6-540P-201ENST00000384622 EIF2AK3Q9NZJ5 1116 aaKnown RBP4.43□□□□□ -1.7
RNU6-540P-201ENST00000384622 PTGER2P43116 358 aa4.42□□□□□ -1.7
RNU6-540P-201ENST00000384622 MKRN4PQ13434 485 aaPredicted RBP4.42□□□□□ -1.7
RNU6-540P-201ENST00000384622 TRPC6Q9Y210 931 aa4.42□□□□□ -1.7
RNU6-540P-201ENST00000384622 TTLL13PA6NNM8 815 aa4.39□□□□□ -1.71
RNU6-540P-201ENST00000384622 PLCG2P16885 1265 aa4.39□□□□□ -1.71
RNU6-540P-201ENST00000384622 TRIM35Q9UPQ4 493 aa4.39□□□□□ -1.71
RNU6-540P-201ENST00000384622 Q6ZNB5 142 aa4.36□□□□□ -1.71
RNU6-540P-201ENST00000384622 KIF12Q96FN5 646 aa4.36□□□□□ -1.71
RNU6-540P-201ENST00000384622 ERBB3P21860 1342 aa4.35□□□□□ -1.71
RNU6-540P-201ENST00000384622 TSPYL2Q9H2G4 693 aaPredicted RBP4.34□□□□□ -1.71
RNU6-540P-201ENST00000384622 RGS20O76081 388 aa4.33□□□□□ -1.72
RNU6-540P-201ENST00000384622 HCSTQ9UBK5 93 aa4.32□□□□□ -1.72
RNU6-540P-201ENST00000384622 CCDC61Q9Y6R9 512 aa4.31□□□□□ -1.72
RNU6-540P-201ENST00000384622 MAP3K13O43283 966 aa4.29□□□□□ -1.72
RNU6-540P-201ENST00000384622 ANKRD13DQ6ZTN6 518 aa4.29□□□□□ -1.72
RNU6-540P-201ENST00000384622 STAG3Q9UJ98 1225 aa4.29□□□□□ -1.72
RNU6-540P-201ENST00000384622 MNX1P50219 401 aaPredicted RBP4.28□□□□□ -1.72
RNU6-540P-201ENST00000384622 IRX5P78411 483 aaPredicted RBP4.27□□□□□ -1.73
RNU6-540P-201ENST00000384622 VARS2Q5ST30 1063 aaKnown RBP4.27□□□□□ -1.73
RNU6-540P-201ENST00000384622 C3orf67Q6ZVT6 689 aa4.25□□□□□ -1.73
RNU6-540P-201ENST00000384622 OCEL1Q9H607 264 aa4.25□□□□□ -1.73
RNU6-540P-201ENST00000384622 HOXB1P14653 301 aaPredicted RBP4.24□□□□□ -1.73
RNU6-540P-201ENST00000384622 ZNF687Q8N1G0 1237 aa4.24□□□□□ -1.73
RNU6-540P-201ENST00000384622 ZNF710Q8N1W2 664 aa4.23□□□□□ -1.73
RNU6-540P-201ENST00000384622 FOXD4L1Q9NU39 408 aa4.19□□□□□ -1.74
RNU6-540P-201ENST00000384622 KCNA4P22459 653 aa4.18□□□□□ -1.74
RNU6-540P-201ENST00000384622 TRAF7Q6Q0C0 670 aa4.18□□□□□ -1.74
RNU6-540P-201ENST00000384622 ZNF775Q96BV0 537 aaPredicted RBP4.18□□□□□ -1.74
RNU6-540P-201ENST00000384622 TMEM106CQ9BVX2 250 aa4.18□□□□□ -1.74
RNU6-540P-201ENST00000384622 HOXB3P14651 431 aaPredicted RBP4.16□□□□□ -1.74
RNU6-540P-201ENST00000384622 ATXN8OSP0DMR3 200 aa4.15□□□□□ -1.75
RNU6-540P-201ENST00000384622 ZNF787Q6DD87 383 aa4.15□□□□□ -1.75
RNU6-540P-201ENST00000384622 LSM11P83369 360 aaKnown RBP eCLIP4.14□□□□□ -1.75
RNU6-540P-201ENST00000384622 PCDHB13Q9Y5F0 798 aa4.14□□□□□ -1.75
RNU6-540P-201ENST00000384622 LCE2BO14633 110 aa4.13□□□□□ -1.75
RNU6-540P-201ENST00000384622 L3MBTL3Q96JM7 780 aaPredicted RBP4.13□□□□□ -1.75
RNU6-540P-201ENST00000384622 SGIP1Q9BQI5 828 aa4.13□□□□□ -1.75
RNU6-540P-201ENST00000384622 DOK7Q18PE1 504 aa4.12□□□□□ -1.75
RNU6-540P-201ENST00000384622 A0A0G2JS52 829 aa4.11□□□□□ -1.75
RNU6-540P-201ENST00000384622 RIMBP2O15034 1052 aa4.11□□□□□ -1.75
RNU6-540P-201ENST00000384622 LAPTM4AQ15012 233 aa4.11□□□□□ -1.75
RNU6-540P-201ENST00000384622 SUZ12Q15022 739 aaKnown RBP4.09□□□□□ -1.75
RNU6-540P-201ENST00000384622 IFFO2Q5TF58 517 aa4.09□□□□□ -1.75
RNU6-540P-201ENST00000384622 IFNL1Q8IU54 200 aa4.06□□□□□ -1.76
RNU6-540P-201ENST00000384622 PDCD7Q8N8D1 485 aaKnown RBP4.04□□□□□ -1.76
RNU6-540P-201ENST00000384622 GFRA3O60609 400 aa4.03□□□□□ -1.76
RNU6-540P-201ENST00000384622 STK17AQ9UEE5 414 aa4.03□□□□□ -1.76
RNU6-540P-201ENST00000384622 ZSWIM6Q9HCJ5 1215 aa4.01□□□□□ -1.77
RNU6-540P-201ENST00000384622 KCTD12Q96CX2 325 aaKnown RBP4□□□□□ -1.77
RNU6-540P-201ENST00000384622 RASEFQ8IZ41 740 aa3.99□□□□□ -1.77
RNU6-540P-201ENST00000384622 PBX2P40425 430 aa3.98□□□□□ -1.77
RNU6-540P-201ENST00000384622 PTPN5P54829 565 aa3.97□□□□□ -1.77
RNU6-540P-201ENST00000384622 GPR153Q6NV75 609 aa3.97□□□□□ -1.77
RNU6-540P-201ENST00000384622 G3V3G9 751 aa3.96□□□□□ -1.78
RNU6-540P-201ENST00000384622 DCAF8Q5TAQ9 597 aa3.96□□□□□ -1.78
RNU6-540P-201ENST00000384622 ADGRD1Q6QNK2 874 aa3.96□□□□□ -1.78
RNU6-540P-201ENST00000384622 TREML4Q6UXN2 200 aa3.95□□□□□ -1.78
RNU6-540P-201ENST00000384622 AXIN2Q9Y2T1 843 aa3.95□□□□□ -1.78
RNU6-540P-201ENST00000384622 ZNF316A6NFI3 1004 aaPredicted RBP3.94□□□□□ -1.78
RNU6-540P-201ENST00000384622 MKRN3Q13064 507 aaKnown RBP3.94□□□□□ -1.78
RNU6-540P-201ENST00000384622 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP3.94□□□□□ -1.78
RNU6-540P-201ENST00000384622 GOLGA2Q08379 1002 aa3.93□□□□□ -1.78
RNU6-540P-201ENST00000384622 NRG2O14511 850 aaPredicted RBP3.92□□□□□ -1.78
RNU6-540P-201ENST00000384622 POTEEQ6S8J3 1075 aa3.92□□□□□ -1.78
RNU6-540P-201ENST00000384622 STAC3Q96MF2 364 aa3.92□□□□□ -1.78
RNU6-540P-201ENST00000384622 KRTAP4-8Q9BYQ9 185 aa3.92□□□□□ -1.78
RNU6-540P-201ENST00000384622 ARSIQ5FYB1 569 aa3.91□□□□□ -1.78
RNU6-540P-201ENST00000384622 INSM1Q01101 510 aaPredicted RBP3.9□□□□□ -1.79
RNU6-540P-201ENST00000384622 LCE2AQ5TA79 106 aaPredicted RBP3.9□□□□□ -1.79
RNU6-540P-201ENST00000384622 BOLA1Q9Y3E2 137 aa3.9□□□□□ -1.79
RNU6-540P-201ENST00000384622 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.88□□□□□ -1.79
RNU6-540P-201ENST00000384622 HRO43593 1189 aa3.87□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms