RNA–Protein interactions for RNA: ENST00000380494.9

COL4A3BP-203, Transcript of collagen type IV alpha 3 binding protein, humanhuman

TSL 2 BASIC

Gene COL4A3BP, Length 5,651 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3BP-203ENST00000380494 NAP1L5Q96NT1 182 aaPredicted RBP22.47■■□□□ 1.19
COL4A3BP-203ENST00000380494 GOLGA3Q08378 1498 aa22.42■■□□□ 1.18
COL4A3BP-203ENST00000380494 ARID3CA6NKF2 412 aa22.41■■□□□ 1.18
COL4A3BP-203ENST00000380494 CEP162Q5TB80 1403 aa22.41■■□□□ 1.18
COL4A3BP-203ENST00000380494 DEKP35659 375 aaKnown RBP22.4■■□□□ 1.18
COL4A3BP-203ENST00000380494 PTMAP06454 111 aaKnown RBP22.37■■□□□ 1.17
COL4A3BP-203ENST00000380494 FBLN2P98095 1184 aa22.36■■□□□ 1.17
COL4A3BP-203ENST00000380494 SCRIBQ14160 1630 aa22.36■■□□□ 1.17
COL4A3BP-203ENST00000380494 RTN4Q9NQC3 1192 aaKnown RBP22.35■■□□□ 1.17
COL4A3BP-203ENST00000380494 LAS1LQ9Y4W2 734 aaKnown RBP22.35■■□□□ 1.17
COL4A3BP-203ENST00000380494 L1TD1Q5T7N2 865 aaKnown RBP22.33■■□□□ 1.17
COL4A3BP-203ENST00000380494 MTUS2Q5JR59 1369 aa22.33■■□□□ 1.17
COL4A3BP-203ENST00000380494 HIRIP3Q9BW71 556 aaPredicted RBP22.33■■□□□ 1.16
COL4A3BP-203ENST00000380494 CHIC2Q9UKJ5 165 aa22.32■■□□□ 1.16
COL4A3BP-203ENST00000380494 DNTTIP2Q5QJE6 756 aaKnown RBP22.3■■□□□ 1.16
COL4A3BP-203ENST00000380494 RBM19Q9Y4C8 960 aaKnown RBP22.3■■□□□ 1.16
COL4A3BP-203ENST00000380494 CASC1Q6TDU7 716 aa22.26■■□□□ 1.15
COL4A3BP-203ENST00000380494 CCER2I3L3R5 266 aa22.26■■□□□ 1.15
COL4A3BP-203ENST00000380494 RSF1Q96T23 1441 aaPredicted RBP22.25■■□□□ 1.15
COL4A3BP-203ENST00000380494 TNIKQ9UKE5 1360 aa22.25■■□□□ 1.15
COL4A3BP-203ENST00000380494 KDM2AQ9Y2K7 1162 aa22.22■■□□□ 1.15
COL4A3BP-203ENST00000380494 CHGAP10645 457 aaKnown RBP22.21■■□□□ 1.15
COL4A3BP-203ENST00000380494 TSPY4P0CV99 314 aa22.18■■□□□ 1.14
COL4A3BP-203ENST00000380494 TSPY10P0CW01 314 aa22.18■■□□□ 1.14
COL4A3BP-203ENST00000380494 CDK11BP21127 795 aaKnown RBP22.18■■□□□ 1.14
COL4A3BP-203ENST00000380494 CDCA8Q53HL2 280 aa22.16■■□□□ 1.14
COL4A3BP-203ENST00000380494 TIMELESSQ9UNS1 1208 aa22.15■■□□□ 1.14
COL4A3BP-203ENST00000380494 ZRSR1Q15695 479 aaKnown RBP22.13■■□□□ 1.13
COL4A3BP-203ENST00000380494 B4GALNT3Q6L9W6 998 aa22.13■■□□□ 1.13
COL4A3BP-203ENST00000380494 STAG3Q9UJ98 1225 aa22.12■■□□□ 1.13
COL4A3BP-203ENST00000380494 CEP164Q9UPV0 1460 aa22.12■■□□□ 1.13
COL4A3BP-203ENST00000380494 CFAP53Q96M91 514 aa22.12■■□□□ 1.13
COL4A3BP-203ENST00000380494 FTSJ3Q8IY81 847 aaKnown RBP22.11■■□□□ 1.13
COL4A3BP-203ENST00000380494 CHMP4BQ9H444 224 aaKnown RBP22.11■■□□□ 1.13
COL4A3BP-203ENST00000380494 MSNP26038 577 aaKnown RBP22.1■■□□□ 1.13
COL4A3BP-203ENST00000380494 GOLGA6L6A8MZA4 724 aa22.1■■□□□ 1.13
COL4A3BP-203ENST00000380494 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.1■■□□□ 1.132e-6■■■■□ 20.7
COL4A3BP-203ENST00000380494 MS4A1P11836 297 aa22.09■■□□□ 1.13
COL4A3BP-203ENST00000380494 HSP90AB1P08238 724 aaKnown RBP22.09■■□□□ 1.13
COL4A3BP-203ENST00000380494 PTMSP20962 102 aa22.08■■□□□ 1.13
COL4A3BP-203ENST00000380494 CHAF1AQ13111 956 aaPredicted RBP22.07■■□□□ 1.12
COL4A3BP-203ENST00000380494 KNSTRNQ9Y448 316 aa22.07■■□□□ 1.12
COL4A3BP-203ENST00000380494 RRP7BPQ9NSQ0 103 aa22.07■■□□□ 1.12
COL4A3BP-203ENST00000380494 TSHZ2Q9NRE2 1034 aa22.07■■□□□ 1.12
COL4A3BP-203ENST00000380494 RGS3P49796 1198 aa22.06■■□□□ 1.12
COL4A3BP-203ENST00000380494 HSCBQ8IWL3 235 aa22.05■■□□□ 1.12
COL4A3BP-203ENST00000380494 ESF1Q9H501 851 aaKnown RBP22.03■■□□□ 1.12
COL4A3BP-203ENST00000380494 CARD11Q9BXL7 1154 aa21.99■■□□□ 1.11
COL4A3BP-203ENST00000380494 NRDCO43847 1150 aa21.99■■□□□ 1.11
COL4A3BP-203ENST00000380494 CFAP44Q96MT7 982 aa21.98■■□□□ 1.11
COL4A3BP-203ENST00000380494 TCERG1O14776 1098 aaKnown RBP21.97■■□□□ 1.11
COL4A3BP-203ENST00000380494 IPO9Q96P70 1041 aaKnown RBP21.92■■□□□ 1.1
COL4A3BP-203ENST00000380494 PNNQ9H307 717 aaKnown RBP21.92■■□□□ 1.1
COL4A3BP-203ENST00000380494 WRNQ14191 1432 aaPredicted RBP eCLIP21.92■■□□□ 1.1
COL4A3BP-203ENST00000380494 CCNB3Q8WWL7 1395 aa21.91■■□□□ 1.1
COL4A3BP-203ENST00000380494 SIN3AQ96ST3 1273 aa21.91■■□□□ 1.1
COL4A3BP-203ENST00000380494 PLCB2Q00722 1185 aa21.89■■□□□ 1.09
COL4A3BP-203ENST00000380494 MAPK8IP3Q9UPT6 1336 aa21.88■■□□□ 1.09
COL4A3BP-203ENST00000380494 GBP4Q96PP9 640 aa21.88■■□□□ 1.09
COL4A3BP-203ENST00000380494 USP35Q9P2H5 1018 aa21.87■■□□□ 1.09
COL4A3BP-203ENST00000380494 NUDCQ9Y266 331 aa21.86■■□□□ 1.09
COL4A3BP-203ENST00000380494 FRAT1Q92837 279 aaPredicted RBP21.86■■□□□ 1.09
COL4A3BP-203ENST00000380494 RB1CC1Q8TDY2 1594 aa21.86■■□□□ 1.09
COL4A3BP-203ENST00000380494 RSPH6AQ9H0K4 717 aa21.84■■□□□ 1.09
COL4A3BP-203ENST00000380494 KIF27Q86VH2 1401 aa21.83■■□□□ 1.08
COL4A3BP-203ENST00000380494 GOLGA6L3A6NEY3 463 aa21.81■■□□□ 1.08
COL4A3BP-203ENST00000380494 SETD5Q9C0A6 1442 aa21.81■■□□□ 1.08
COL4A3BP-203ENST00000380494 SENP3-EIF4A1A0A087X0R7 540 aa21.8■■□□□ 1.08
COL4A3BP-203ENST00000380494 MCCP23508 829 aa21.79■■□□□ 1.08
COL4A3BP-203ENST00000380494 KIAA2012Q0VF49 1180 aa21.78■■□□□ 1.08
COL4A3BP-203ENST00000380494 ZBTB4Q9P1Z0 1013 aaPredicted RBP21.78■■□□□ 1.08
COL4A3BP-203ENST00000380494 FHAD1B1AJZ9 1412 aa21.77■■□□□ 1.08
COL4A3BP-203ENST00000380494 TPRNQ4KMQ1 711 aa21.77■■□□□ 1.08
COL4A3BP-203ENST00000380494 NPM1P06748 294 aaKnown RBP eCLIP21.76■■□□□ 1.07
COL4A3BP-203ENST00000380494 GOLGA6L4A6NEF3 574 aa21.76■■□□□ 1.07
COL4A3BP-203ENST00000380494 RGL3Q3MIN7 710 aa21.75■■□□□ 1.07
COL4A3BP-203ENST00000380494 CC2D1BQ5T0F9 858 aaKnown RBP21.74■■□□□ 1.07
COL4A3BP-203ENST00000380494 TMF1P82094 1093 aa21.74■■□□□ 1.07
COL4A3BP-203ENST00000380494 RCAN3Q9UKA8 241 aa21.74■■□□□ 1.07
COL4A3BP-203ENST00000380494 NEUROD2Q15784 382 aa21.73■■□□□ 1.07
COL4A3BP-203ENST00000380494 HSPA5P11021 654 aaKnown RBP21.72■■□□□ 1.07
COL4A3BP-203ENST00000380494 ARID4BQ4LE39 1312 aaPredicted RBP21.72■■□□□ 1.07
COL4A3BP-203ENST00000380494 KTN1Q86UP2 1357 aaKnown RBP21.71■■□□□ 1.07
COL4A3BP-203ENST00000380494 DRC7Q8IY82 874 aa21.71■■□□□ 1.07
COL4A3BP-203ENST00000380494 PLEKHD1A6NEE1 506 aa21.7■■□□□ 1.06
COL4A3BP-203ENST00000380494 SYAP1Q96A49 352 aaPredicted RBP21.7■■□□□ 1.06
COL4A3BP-203ENST00000380494 CFDP1Q9UEE9 299 aaPredicted RBP21.7■■□□□ 1.06
COL4A3BP-203ENST00000380494 VPS8Q8N3P4 1428 aa21.7■■□□□ 1.06
COL4A3BP-203ENST00000380494 FANCIQ9NVI1 1328 aa21.69■■□□□ 1.06
COL4A3BP-203ENST00000380494 RALBP1Q15311 655 aa21.68■■□□□ 1.06
COL4A3BP-203ENST00000380494 SPRYD3Q8NCJ5 442 aa21.68■■□□□ 1.06
COL4A3BP-203ENST00000380494 PRKCSHP14314 528 aaPredicted RBP21.67■■□□□ 1.06
COL4A3BP-203ENST00000380494 HSP90AA2PQ14568 343 aaPredicted RBP21.66■■□□□ 1.06
COL4A3BP-203ENST00000380494 RWDD1Q9H446 243 aaPredicted RBP21.66■■□□□ 1.06
COL4A3BP-203ENST00000380494 PMFBP1Q8TBY8 1022 aa21.64■■□□□ 1.05
COL4A3BP-203ENST00000380494 FGD1P98174 961 aa21.62■■□□□ 1.05
COL4A3BP-203ENST00000380494 KCNJ4P48050 445 aa21.61■■□□□ 1.05
COL4A3BP-203ENST00000380494 GZF1Q9H116 711 aaPredicted RBP21.61■■□□□ 1.05
COL4A3BP-203ENST00000380494 HAP1P54257 671 aaPredicted RBP21.61■■□□□ 1.05
COL4A3BP-203ENST00000380494 SLKQ9H2G2 1235 aaPredicted RBP21.61■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms