RNA–Protein interactions for RNA: ENST00000375023.3

NOTCH4-201, Transcript of notch 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NOTCH4, Length 6,745 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NOTCH4-201ENST00000375023 TPRNQ4KMQ1 711 aa19.84■□□□□ 0.77
NOTCH4-201ENST00000375023 UPF2Q9HAU5 1272 aaKnown RBP19.83■□□□□ 0.77
NOTCH4-201ENST00000375023 TMC1Q8TDI8 760 aa19.81■□□□□ 0.76
NOTCH4-201ENST00000375023 ZBTB4Q9P1Z0 1013 aaPredicted RBP19.8■□□□□ 0.76
NOTCH4-201ENST00000375023 CCDC136Q96JN2 1154 aa19.78■□□□□ 0.76
NOTCH4-201ENST00000375023 WDR43Q15061 677 aaKnown RBP eCLIP19.76■□□□□ 0.75
NOTCH4-201ENST00000375023 MLECQ14165 292 aa19.74■□□□□ 0.75
NOTCH4-201ENST00000375023 MRS2Q9HD23 443 aa19.69■□□□□ 0.74
NOTCH4-201ENST00000375023 CDK11BP21127 795 aaKnown RBP19.66■□□□□ 0.74
NOTCH4-201ENST00000375023 GOLGA6L2Q8N9W4 650 aaPredicted RBP19.65■□□□□ 0.74
NOTCH4-201ENST00000375023 CHMP7Q8WUX9 453 aaPredicted RBP19.64■□□□□ 0.73
NOTCH4-201ENST00000375023 RRP7BPQ9NSQ0 103 aa19.63■□□□□ 0.73
NOTCH4-201ENST00000375023 PPM1GO15355 546 aaPredicted RBP19.62■□□□□ 0.73
NOTCH4-201ENST00000375023 PHF23Q9BUL5 403 aaPredicted RBP19.62■□□□□ 0.73
NOTCH4-201ENST00000375023 SCRIBQ14160 1630 aa19.62■□□□□ 0.73
NOTCH4-201ENST00000375023 RGL3Q3MIN7 710 aa19.61■□□□□ 0.73
NOTCH4-201ENST00000375023 CCDC9Q9Y3X0 531 aaKnown RBP19.6■□□□□ 0.73
NOTCH4-201ENST00000375023 AMER1Q5JTC6 1135 aaPredicted RBP19.58■□□□□ 0.72
NOTCH4-201ENST00000375023 MYH16Q9H6N6 1097 aa19.56■□□□□ 0.72
NOTCH4-201ENST00000375023 SOX12O15370 315 aa19.55■□□□□ 0.72
NOTCH4-201ENST00000375023 MIER1Q8N108 512 aa19.54■□□□□ 0.72
NOTCH4-201ENST00000375023 CLSTN1O94985 981 aa19.54■□□□□ 0.72
NOTCH4-201ENST00000375023 TSPY4P0CV99 314 aa19.53■□□□□ 0.72
NOTCH4-201ENST00000375023 TSPY10P0CW01 314 aa19.53■□□□□ 0.72
NOTCH4-201ENST00000375023 LAS1LQ9Y4W2 734 aaKnown RBP19.53■□□□□ 0.72
NOTCH4-201ENST00000375023 NCLP19338 710 aaKnown RBP19.51■□□□□ 0.71
NOTCH4-201ENST00000375023 NEUROD2Q15784 382 aa19.51■□□□□ 0.71
NOTCH4-201ENST00000375023 ISY1Q9ULR0 285 aaKnown RBP19.5■□□□□ 0.71
NOTCH4-201ENST00000375023 TNNT2P45379 298 aaPredicted RBP19.47■□□□□ 0.71
NOTCH4-201ENST00000375023 MTUS2Q5JR59 1369 aa19.44■□□□□ 0.7
NOTCH4-201ENST00000375023 KLHL34Q8N239 644 aa19.41■□□□□ 0.7
NOTCH4-201ENST00000375023 ZNF330Q9Y3S2 320 aaPredicted RBP19.35■□□□□ 0.69
NOTCH4-201ENST00000375023 EIF4G2P78344 907 aaKnown RBP eCLIP19.34■□□□□ 0.69
NOTCH4-201ENST00000375023 RTN4Q9NQC3 1192 aaKnown RBP19.33■□□□□ 0.69
NOTCH4-201ENST00000375023 GLIPR1L2Q4G1C9 344 aa19.31■□□□□ 0.68
NOTCH4-201ENST00000375023 GOLGA2Q08379 1002 aa19.3■□□□□ 0.68
NOTCH4-201ENST00000375023 PLCB2Q00722 1185 aa19.3■□□□□ 0.68
NOTCH4-201ENST00000375023 TRIM44Q96DX7 344 aaPredicted RBP19.3■□□□□ 0.68
NOTCH4-201ENST00000375023 FTSJ3Q8IY81 847 aaKnown RBP19.29■□□□□ 0.68
NOTCH4-201ENST00000375023 SUPT16HQ9Y5B9 1047 aaKnown RBP19.29■□□□□ 0.68
NOTCH4-201ENST00000375023 FRAT1Q92837 279 aaPredicted RBP19.29■□□□□ 0.68
NOTCH4-201ENST00000375023 CC2D1BQ5T0F9 858 aaKnown RBP19.28■□□□□ 0.68
NOTCH4-201ENST00000375023 PTMAP06454 111 aaKnown RBP19.28■□□□□ 0.68
NOTCH4-201ENST00000375023 NAP1L2Q9ULW6 460 aaPredicted RBP19.28■□□□□ 0.68
NOTCH4-201ENST00000375023 RGS3P49796 1198 aa19.27■□□□□ 0.68
NOTCH4-201ENST00000375023 ERCC6Q03468 1493 aa19.25■□□□□ 0.67
NOTCH4-201ENST00000375023 DNTTIP2Q5QJE6 756 aaKnown RBP19.25■□□□□ 0.67
NOTCH4-201ENST00000375023 ANO8Q9HCE9 1232 aaPredicted RBP19.25■□□□□ 0.67
NOTCH4-201ENST00000375023 PRM3Q9NNZ6 103 aa19.25■□□□□ 0.67
NOTCH4-201ENST00000375023 BECN1Q14457 450 aa19.24■□□□□ 0.67
NOTCH4-201ENST00000375023 MSH5O43196 834 aa19.24■□□□□ 0.67
NOTCH4-201ENST00000375023 KNSTRNQ9Y448 316 aa19.23■□□□□ 0.67
NOTCH4-201ENST00000375023 ZRSR1Q15695 479 aaKnown RBP19.22■□□□□ 0.67
NOTCH4-201ENST00000375023 PAK3O75914 559 aaPredicted RBP19.21■□□□□ 0.67
NOTCH4-201ENST00000375023 U2SURPO15042 1029 aaKnown RBP19.2■□□□□ 0.66
NOTCH4-201ENST00000375023 SAFB2Q14151 953 aaKnown RBP eCLIP19.2■□□□□ 0.66
NOTCH4-201ENST00000375023 MEX3CQ5U5Q3 659 aaKnown RBP19.2■□□□□ 0.66
NOTCH4-201ENST00000375023 CARD11Q9BXL7 1154 aa19.2■□□□□ 0.66
NOTCH4-201ENST00000375023 SPRYD3Q8NCJ5 442 aa19.2■□□□□ 0.66
NOTCH4-201ENST00000375023 POGKQ9P215 609 aa19.19■□□□□ 0.66
NOTCH4-201ENST00000375023 OS9Q13438 667 aaPredicted RBP19.19■□□□□ 0.66
NOTCH4-201ENST00000375023 CFAP53Q96M91 514 aa19.19■□□□□ 0.66
NOTCH4-201ENST00000375023 PLEKHD1A6NEE1 506 aa19.18■□□□□ 0.66
NOTCH4-201ENST00000375023 GOLGA6L22H0YM25 854 aa19.16■□□□□ 0.66
NOTCH4-201ENST00000375023 SIN3AQ96ST3 1273 aa19.16■□□□□ 0.66
NOTCH4-201ENST00000375023 KRI1Q8N9T8 703 aaKnown RBP19.16■□□□□ 0.66
NOTCH4-201ENST00000375023 ZCCHC6Q5VYS8 1495 aaKnown RBP19.16■□□□□ 0.66
NOTCH4-201ENST00000375023 DDRGK1Q96HY6 314 aa19.15■□□□□ 0.66
NOTCH4-201ENST00000375023 CASC1Q6TDU7 716 aa19.15■□□□□ 0.66
NOTCH4-201ENST00000375023 MAPK8IP3Q9UPT6 1336 aa19.15■□□□□ 0.66
NOTCH4-201ENST00000375023 CLIP1P30622 1438 aa19.14■□□□□ 0.65
NOTCH4-201ENST00000375023 CSB-PGBD3P0DP91 1061 aa19.12■□□□□ 0.65
NOTCH4-201ENST00000375023 FGD1P98174 961 aa19.11■□□□□ 0.65
NOTCH4-201ENST00000375023 CFDP1Q9UEE9 299 aaPredicted RBP19.11■□□□□ 0.65
NOTCH4-201ENST00000375023 G3V3G9 751 aa19.1■□□□□ 0.65
NOTCH4-201ENST00000375023 DCAF8Q5TAQ9 597 aa19.1■□□□□ 0.65
NOTCH4-201ENST00000375023 KCNJ4P48050 445 aa19.08■□□□□ 0.65
NOTCH4-201ENST00000375023 APBB1O00213 710 aa19.08■□□□□ 0.64
NOTCH4-201ENST00000375023 NAP1L5Q96NT1 182 aaPredicted RBP19.08■□□□□ 0.64
NOTCH4-201ENST00000375023 TMX4Q9H1E5 349 aaPredicted RBP19.07■□□□□ 0.64
NOTCH4-201ENST00000375023 B4GALNT3Q6L9W6 998 aa19.07■□□□□ 0.64
NOTCH4-201ENST00000375023 HSP90AB1P08238 724 aaKnown RBP19.06■□□□□ 0.64
NOTCH4-201ENST00000375023 DCAF1Q9Y4B6 1507 aa19.04■□□□□ 0.64
NOTCH4-201ENST00000375023 DCAF8L1A6NGE4 600 aa19.03■□□□□ 0.64
NOTCH4-201ENST00000375023 PDE4CQ08493 712 aa19.01■□□□□ 0.63
NOTCH4-201ENST00000375023 STK26Q9P289 416 aa19.01■□□□□ 0.63
NOTCH4-201ENST00000375023 NUDCQ9Y266 331 aa18.98■□□□□ 0.63
NOTCH4-201ENST00000375023 MYO15BQ96JP2 1530 aa18.98■□□□□ 0.63
NOTCH4-201ENST00000375023 SRPK2P78362 688 aaKnown RBP18.98■□□□□ 0.63
NOTCH4-201ENST00000375023 DCAF11Q8TEB1 546 aa18.97■□□□□ 0.63
NOTCH4-201ENST00000375023 PPP1R1BQ9UD71 204 aaPredicted RBP18.95■□□□□ 0.62
NOTCH4-201ENST00000375023 ERICH6BQ5W0A0 696 aa18.94■□□□□ 0.62
NOTCH4-201ENST00000375023 CDCA8Q53HL2 280 aa18.93■□□□□ 0.62
NOTCH4-201ENST00000375023 ARID3AQ99856 593 aa18.93■□□□□ 0.62
NOTCH4-201ENST00000375023 FOXD1Q16676 465 aa18.93■□□□□ 0.62
NOTCH4-201ENST00000375023 NUTM2FA1L443 756 aa18.92■□□□□ 0.62
NOTCH4-201ENST00000375023 CEP162Q5TB80 1403 aa18.92■□□□□ 0.62
NOTCH4-201ENST00000375023 RSF1Q96T23 1441 aaPredicted RBP18.92■□□□□ 0.62
NOTCH4-201ENST00000375023 GGT6Q6P531 493 aa18.91■□□□□ 0.62
NOTCH4-201ENST00000375023 FBXO3Q9UK99 471 aa18.91■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 79.2 ms