RNA–Protein interactions for RNA: ENST00000374730.2

USP48-202, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 570 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-202ENST00000374730 KLHL34Q8N239 644 aa12.27□□□□□ -0.45
USP48-202ENST00000374730 FAM212AQ96EL1 285 aa12.25□□□□□ -0.45
USP48-202ENST00000374730 IFNLR1Q8IU57 520 aaPredicted RBP12.24□□□□□ -0.45
USP48-202ENST00000374730 GALR2O43603 387 aaPredicted RBP12.2□□□□□ -0.46
USP48-202ENST00000374730 KIF12Q96FN5 646 aa12.18□□□□□ -0.46
USP48-202ENST00000374730 SPOCK2Q92563 424 aa12.17□□□□□ -0.46
USP48-202ENST00000374730 MS4A3Q96HJ5 214 aa12.16□□□□□ -0.46
USP48-202ENST00000374730 DCAF8Q5TAQ9 597 aa12.14□□□□□ -0.47
USP48-202ENST00000374730 GSE1Q14687 1217 aa12.13□□□□□ -0.47
USP48-202ENST00000374730 DCBLD2Q96PD2 775 aa12.13□□□□□ -0.47
USP48-202ENST00000374730 SGIP1Q9BQI5 828 aa12.12□□□□□ -0.47
USP48-202ENST00000374730 MAP3K13O43283 966 aa12.11□□□□□ -0.47
USP48-202ENST00000374730 POTEIP0CG38 1075 aa12.11□□□□□ -0.47
USP48-202ENST00000374730 PCDHB13Q9Y5F0 798 aa12.05□□□□□ -0.48
USP48-202ENST00000374730 PYGBP11216 843 aa12.03□□□□□ -0.48
USP48-202ENST00000374730 ASTLQ6HA08 431 aaPredicted RBP12.01□□□□□ -0.49
USP48-202ENST00000374730 CHRM1P11229 460 aaPredicted RBP12□□□□□ -0.49
USP48-202ENST00000374730 TIE1P35590 1138 aa12□□□□□ -0.49
USP48-202ENST00000374730 IFNL1Q8IU54 200 aa11.99□□□□□ -0.49
USP48-202ENST00000374730 CIZ1Q9ULV3 898 aaPredicted RBP11.99□□□□□ -0.49
USP48-202ENST00000374730 ATMINO43313 823 aaPredicted RBP11.98□□□□□ -0.49
USP48-202ENST00000374730 TRIM41Q8WV44 630 aa11.96□□□□□ -0.49
USP48-202ENST00000374730 BMP2KQ9NSY1 1161 aaPredicted RBP11.96□□□□□ -0.49
USP48-202ENST00000374730 TRPC6Q9Y210 931 aa11.96□□□□□ -0.49
USP48-202ENST00000374730 ZNF467Q7Z7K2 595 aaPredicted RBP11.93□□□□□ -0.5
USP48-202ENST00000374730 ATN1P54259 1190 aaPredicted RBP11.91□□□□□ -0.5
USP48-202ENST00000374730 PELP1Q8IZL8 1130 aaKnown RBP11.91□□□□□ -0.5
USP48-202ENST00000374730 TTLL13PA6NNM8 815 aa11.9□□□□□ -0.5
USP48-202ENST00000374730 SLC39A7Q92504 469 aa11.89□□□□□ -0.51
USP48-202ENST00000374730 PCDHB8Q9UN66 801 aa11.88□□□□□ -0.51
USP48-202ENST00000374730 C7P10643 843 aa11.86□□□□□ -0.51
USP48-202ENST00000374730 TMEM106CQ9BVX2 250 aa11.85□□□□□ -0.51
USP48-202ENST00000374730 LHX8Q68G74 356 aa11.84□□□□□ -0.51
USP48-202ENST00000374730 METRNQ9UJH8 293 aa11.84□□□□□ -0.51
USP48-202ENST00000374730 TRIM35Q9UPQ4 493 aa11.82□□□□□ -0.52
USP48-202ENST00000374730 IER5LQ5T953 404 aa11.8□□□□□ -0.52
USP48-202ENST00000374730 PDAP1Q13442 181 aaKnown RBP11.78□□□□□ -0.52
USP48-202ENST00000374730 PSEN1P49768 467 aa11.77□□□□□ -0.53
USP48-202ENST00000374730 RIOK3O14730 519 aaKnown RBP11.72□□□□□ -0.53
USP48-202ENST00000374730 RNF25Q96BH1 459 aaPredicted RBP11.72□□□□□ -0.53
USP48-202ENST00000374730 POTEB2H3BUK9 544 aa11.71□□□□□ -0.53
USP48-202ENST00000374730 PKD2Q13563 968 aa11.71□□□□□ -0.53
USP48-202ENST00000374730 POTEFA5A3E0 1075 aa11.7□□□□□ -0.54
USP48-202ENST00000374730 ECM2O94769 699 aaPredicted RBP11.69□□□□□ -0.54
USP48-202ENST00000374730 SEC24BO95487 1268 aa11.69□□□□□ -0.54
USP48-202ENST00000374730 VGFO15240 615 aaPredicted RBP11.67□□□□□ -0.54
USP48-202ENST00000374730 IRX5P78411 483 aaPredicted RBP11.67□□□□□ -0.54
USP48-202ENST00000374730 GOLGA2Q08379 1002 aa11.67□□□□□ -0.54
USP48-202ENST00000374730 COLQQ9Y215 455 aaPredicted RBP11.67□□□□□ -0.54
USP48-202ENST00000374730 TAOK2Q9UL54 1235 aa11.66□□□□□ -0.54
USP48-202ENST00000374730 PLCG2P16885 1265 aa11.64□□□□□ -0.55
USP48-202ENST00000374730 MKRN3Q13064 507 aaKnown RBP11.64□□□□□ -0.55
USP48-202ENST00000374730 OCEL1Q9H607 264 aa11.62□□□□□ -0.55
USP48-202ENST00000374730 MAMSTRQ6ZN01 415 aa11.61□□□□□ -0.55
USP48-202ENST00000374730 CABP2Q9NPB3 220 aa11.61□□□□□ -0.55
USP48-202ENST00000374730 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.6□□□□□ -0.55
USP48-202ENST00000374730 POTEJP0CG39 1038 aa11.6□□□□□ -0.55
USP48-202ENST00000374730 OTUD5Q96G74 571 aa11.6□□□□□ -0.55
USP48-202ENST00000374730 ZFP91Q96JP5 570 aaPredicted RBP11.6□□□□□ -0.55
USP48-202ENST00000374730 RGL2O15211 777 aa11.58□□□□□ -0.56
USP48-202ENST00000374730 ILDR1Q86SU0 546 aaPredicted RBP11.56□□□□□ -0.56
USP48-202ENST00000374730 SCUBE2Q9NQ36 999 aa11.56□□□□□ -0.56
USP48-202ENST00000374730 PDCD7Q8N8D1 485 aaKnown RBP11.55□□□□□ -0.56
USP48-202ENST00000374730 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.55□□□□□ -0.562e-7■■■■■ 27.4
USP48-202ENST00000374730 EFCAB3Q8N7B9 438 aa11.52□□□□□ -0.57
USP48-202ENST00000374730 BCL11BQ9C0K0 894 aaPredicted RBP11.51□□□□□ -0.57
USP48-202ENST00000374730 STK25O00506 426 aa11.48□□□□□ -0.57
USP48-202ENST00000374730 SOX12O15370 315 aa11.48□□□□□ -0.57
USP48-202ENST00000374730 L3MBTL3Q96JM7 780 aaPredicted RBP11.47□□□□□ -0.57
USP48-202ENST00000374730 STK24Q9Y6E0 443 aa11.47□□□□□ -0.57
USP48-202ENST00000374730 DPY19L2Q6NUT2 758 aa11.4□□□□□ -0.58
USP48-202ENST00000374730 HS6ST3Q8IZP7 471 aa11.39□□□□□ -0.59
USP48-202ENST00000374730 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.39□□□□□ -0.59
USP48-202ENST00000374730 PHF8Q9UPP1 1060 aa11.39□□□□□ -0.59
USP48-202ENST00000374730 NLRP6P59044 892 aa11.38□□□□□ -0.59
USP48-202ENST00000374730 C3orf67Q6ZVT6 689 aa11.38□□□□□ -0.59
USP48-202ENST00000374730 G3V3G9 751 aa11.37□□□□□ -0.59
USP48-202ENST00000374730 MS4A4AQ96JQ5 239 aa11.37□□□□□ -0.59
USP48-202ENST00000374730 BOLA1Q9Y3E2 137 aa11.37□□□□□ -0.59
USP48-202ENST00000374730 SLAIN1Q8ND83 568 aa11.36□□□□□ -0.59
USP48-202ENST00000374730 FBXO22Q8NEZ5 403 aa11.36□□□□□ -0.59
USP48-202ENST00000374730 MFRPQ9BY79 579 aa11.36□□□□□ -0.59
USP48-202ENST00000374730 AMER1Q5JTC6 1135 aaPredicted RBP11.34□□□□□ -0.59
USP48-202ENST00000374730 TMEM121BQ9BXQ6 578 aaPredicted RBP11.34□□□□□ -0.59
USP48-202ENST00000374730 DNAJC5Q9H3Z4 198 aa11.32□□□□□ -0.6
USP48-202ENST00000374730 CHGAP10645 457 aaKnown RBP11.31□□□□□ -0.6
USP48-202ENST00000374730 MICALL2Q8IY33 904 aa11.29□□□□□ -0.6
USP48-202ENST00000374730 SNPHO15079 494 aa11.23□□□□□ -0.61
USP48-202ENST00000374730 RTN4Q9NQC3 1192 aaKnown RBP11.22□□□□□ -0.61
USP48-202ENST00000374730 DCAF8L2P0C7V8 631 aa11.21□□□□□ -0.61
USP48-202ENST00000374730 RYDENQ9NUL5 291 aaKnown RBP11.2□□□□□ -0.62
USP48-202ENST00000374730 LCE2DQ5TA82 110 aaPredicted RBP11.19□□□□□ -0.62
USP48-202ENST00000374730 FAM163AQ96GL9 167 aaPredicted RBP11.19□□□□□ -0.62
USP48-202ENST00000374730 NKX1-1Q15270 411 aaPredicted RBP11.18□□□□□ -0.62
USP48-202ENST00000374730 TMEM92Q6UXU6 159 aa11.15□□□□□ -0.62
USP48-202ENST00000374730 PPP1R37O75864 691 aa11.14□□□□□ -0.63
USP48-202ENST00000374730 ST18O60284 1047 aa11.13□□□□□ -0.63
USP48-202ENST00000374730 POTEMA6NI47 508 aa11.12□□□□□ -0.63
USP48-202ENST00000374730 POTEGQ6S5H5 508 aa11.11□□□□□ -0.63
USP48-202ENST00000374730 HOXB3P14651 431 aaPredicted RBP11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms