RNA–Protein interactions for RNA: ENST00000372246.7

ATG4A-204, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 1 (best)

Gene ATG4A, Length 2,501 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-204ENST00000372246 PABPN1Q86U42 306 aaKnown RBP eCLIP8.08□□□□□ -1.12
ATG4A-204ENST00000372246 BCANQ96GW7 911 aa8.07□□□□□ -1.12
ATG4A-204ENST00000372246 SPDYE4A6NLX3 237 aa8.06□□□□□ -1.12
ATG4A-204ENST00000372246 MROH2BQ7Z745 1585 aa8.06□□□□□ -1.12
ATG4A-204ENST00000372246 KCNH8Q96L42 1107 aa8.05□□□□□ -1.12
ATG4A-204ENST00000372246 ABCC8Q09428 1581 aa8.05□□□□□ -1.12
ATG4A-204ENST00000372246 SOGA1O94964 1423 aa8.05□□□□□ -1.12
ATG4A-204ENST00000372246 SPDYE1Q8NFV5 336 aaPredicted RBP8.05□□□□□ -1.12
ATG4A-204ENST00000372246 SUPT16HQ9Y5B9 1047 aaKnown RBP8.05□□□□□ -1.12
ATG4A-204ENST00000372246 CEP162Q5TB80 1403 aa8.05□□□□□ -1.12
ATG4A-204ENST00000372246 CCDC88BA6NC98 1476 aa8.04□□□□□ -1.12
ATG4A-204ENST00000372246 RUSC2Q8N2Y8 1516 aa8.04□□□□□ -1.12
ATG4A-204ENST00000372246 PIP4P2Q8N4L2 257 aa8.03□□□□□ -1.12
ATG4A-204ENST00000372246 FXR2P51116 673 aaKnown RBP eCLIP8.03□□□□□ -1.12
ATG4A-204ENST00000372246 ERICH6Q7L0X2 663 aa8.03□□□□□ -1.12
ATG4A-204ENST00000372246 WIZO95785 1651 aa8.03□□□□□ -1.12
ATG4A-204ENST00000372246 TSHZ2Q9NRE2 1034 aa8.02□□□□□ -1.13
ATG4A-204ENST00000372246 CLEC11AQ9Y240 323 aa8.01□□□□□ -1.13
ATG4A-204ENST00000372246 BCL11AQ9H165 835 aa7.98□□□□□ -1.13
ATG4A-204ENST00000372246 PROM2Q8N271 834 aa7.96□□□□□ -1.13
ATG4A-204ENST00000372246 ITGAEP38570 1179 aa7.94□□□□□ -1.14
ATG4A-204ENST00000372246 ANP32EQ9BTT0 268 aa7.93□□□□□ -1.14
ATG4A-204ENST00000372246 WRNQ14191 1432 aaPredicted RBP eCLIP7.93□□□□□ -1.14
ATG4A-204ENST00000372246 PRR29P0C7W0 189 aa7.91□□□□□ -1.14
ATG4A-204ENST00000372246 HIRIP3Q9BW71 556 aaPredicted RBP7.91□□□□□ -1.14
ATG4A-204ENST00000372246 PRKAR2AP13861 404 aaKnown RBP7.9□□□□□ -1.14
ATG4A-204ENST00000372246 TNIKQ9UKE5 1360 aa7.9□□□□□ -1.14
ATG4A-204ENST00000372246 FKBP8Q14318 412 aa7.89□□□□□ -1.15
ATG4A-204ENST00000372246 CHADLQ6NUI6 762 aa7.87□□□□□ -1.15
ATG4A-204ENST00000372246 STAG3Q9UJ98 1225 aa7.87□□□□□ -1.15
ATG4A-204ENST00000372246 EIF4G1Q04637 1599 aaKnown RBP7.86□□□□□ -1.15
ATG4A-204ENST00000372246 KANK4Q5T7N3 995 aaPredicted RBP7.85□□□□□ -1.15
ATG4A-204ENST00000372246 TRIM52Q96A61 297 aa7.85□□□□□ -1.15
ATG4A-204ENST00000372246 IRX6P78412 446 aaPredicted RBP7.84□□□□□ -1.15
ATG4A-204ENST00000372246 DDX10Q13206 875 aaKnown RBP7.83□□□□□ -1.16
ATG4A-204ENST00000372246 DAXXQ9UER7 740 aaPredicted RBP7.83□□□□□ -1.16
ATG4A-204ENST00000372246 DHX57Q6P158 1386 aaKnown RBP7.83□□□□□ -1.16
ATG4A-204ENST00000372246 CLIP1P30622 1438 aa7.82□□□□□ -1.16
ATG4A-204ENST00000372246 CREBZFQ9NS37 354 aa7.82□□□□□ -1.16
ATG4A-204ENST00000372246 RBM19Q9Y4C8 960 aaKnown RBP7.82□□□□□ -1.16
ATG4A-204ENST00000372246 BAZ1AQ9NRL2 1556 aaPredicted RBP7.8□□□□□ -1.16
ATG4A-204ENST00000372246 GOLGA3Q08378 1498 aa7.8□□□□□ -1.16
ATG4A-204ENST00000372246 EVX2Q03828 476 aa7.79□□□□□ -1.16
ATG4A-204ENST00000372246 NACADO15069 1562 aa7.79□□□□□ -1.16
ATG4A-204ENST00000372246 HAX1O00165 279 aa7.79□□□□□ -1.16
ATG4A-204ENST00000372246 SIN3AQ96ST3 1273 aa7.79□□□□□ -1.16
ATG4A-204ENST00000372246 FARP1Q9Y4F1 1045 aaPredicted RBP7.78□□□□□ -1.16
ATG4A-204ENST00000372246 RAPGEF2Q9Y4G8 1499 aa7.77□□□□□ -1.16
ATG4A-204ENST00000372246 SMARCA2P51531 1590 aa7.76□□□□□ -1.17
ATG4A-204ENST00000372246 C19orf67A6NJJ6 358 aa7.76□□□□□ -1.17
ATG4A-204ENST00000372246 VPS8Q8N3P4 1428 aa7.75□□□□□ -1.17
ATG4A-204ENST00000372246 MNX1P50219 401 aaPredicted RBP7.74□□□□□ -1.17
ATG4A-204ENST00000372246 SP7Q8TDD2 431 aaPredicted RBP7.73□□□□□ -1.17
ATG4A-204ENST00000372246 SENP3-EIF4A1A0A087X0R7 540 aa7.73□□□□□ -1.17
ATG4A-204ENST00000372246 TOP2AP11388 1531 aaKnown RBP7.72□□□□□ -1.17
ATG4A-204ENST00000372246 KIF21BO75037 1637 aa7.71□□□□□ -1.17
ATG4A-204ENST00000372246 SYNJ1O43426 1573 aa7.71□□□□□ -1.18
ATG4A-204ENST00000372246 CEP164Q9UPV0 1460 aa7.7□□□□□ -1.18
ATG4A-204ENST00000372246 NEFLP07196 543 aa7.68□□□□□ -1.18
ATG4A-204ENST00000372246 EEA1Q15075 1411 aa7.68□□□□□ -1.18
ATG4A-204ENST00000372246 CNGB1Q14028 1251 aaPredicted RBP7.68□□□□□ -1.18
ATG4A-204ENST00000372246 ATP1B4Q9UN42 357 aaPredicted RBP7.67□□□□□ -1.18
ATG4A-204ENST00000372246 CLSPNQ9HAW4 1339 aa7.67□□□□□ -1.18
ATG4A-204ENST00000372246 FAM50AQ14320 339 aaKnown RBP7.67□□□□□ -1.18
ATG4A-204ENST00000372246 RAB3GAP2Q9H2M9 1393 aa7.66□□□□□ -1.18
ATG4A-204ENST00000372246 SMARCA4P51532 1647 aa7.66□□□□□ -1.18
ATG4A-204ENST00000372246 BAZ1BQ9UIG0 1483 aaKnown RBP7.66□□□□□ -1.18
ATG4A-204ENST00000372246 CD44P16070 742 aaKnown RBP7.66□□□□□ -1.18
ATG4A-204ENST00000372246 WDR97A6NE52 1622 aa7.66□□□□□ -1.18
ATG4A-204ENST00000372246 PPP1R15AO75807 674 aaPredicted RBP7.66□□□□□ -1.18
ATG4A-204ENST00000372246 P3H3Q8IVL6 736 aa7.66□□□□□ -1.18
ATG4A-204ENST00000372246 ARAP1Q96P48 1450 aa7.65□□□□□ -1.18
ATG4A-204ENST00000372246 NBR1Q14596 966 aa7.65□□□□□ -1.18
ATG4A-204ENST00000372246 HNRNPUQ00839 825 aaKnown RBP eCLIP7.64□□□□□ -1.19
ATG4A-204ENST00000372246 CCDC184Q52MB2 194 aa7.63□□□□□ -1.19
ATG4A-204ENST00000372246 MAPKBP1O60336 1514 aa7.63□□□□□ -1.19
ATG4A-204ENST00000372246 CCNB3Q8WWL7 1395 aa7.62□□□□□ -1.19
ATG4A-204ENST00000372246 B4GALNT3Q6L9W6 998 aa7.62□□□□□ -1.19
ATG4A-204ENST00000372246 FBXO3Q9UK99 471 aa7.62□□□□□ -1.19
ATG4A-204ENST00000372246 ANP32CO43423 234 aa7.61□□□□□ -1.19
ATG4A-204ENST00000372246 NPM1P06748 294 aaKnown RBP eCLIP7.61□□□□□ -1.19
ATG4A-204ENST00000372246 PAK3O75914 559 aaPredicted RBP7.6□□□□□ -1.19
ATG4A-204ENST00000372246 DEKP35659 375 aaKnown RBP7.6□□□□□ -1.19
ATG4A-204ENST00000372246 PLCD3Q8N3E9 789 aa7.6□□□□□ -1.19
ATG4A-204ENST00000372246 ANO8Q9HCE9 1232 aaPredicted RBP7.59□□□□□ -1.19
ATG4A-204ENST00000372246 GABBR2O75899 941 aa7.58□□□□□ -1.2
ATG4A-204ENST00000372246 ZRANB1Q9UGI0 708 aa7.58□□□□□ -1.2
ATG4A-204ENST00000372246 ZNF579Q8NAF0 562 aaKnown RBP7.57□□□□□ -1.2
ATG4A-204ENST00000372246 RTN4Q9NQC3 1192 aaKnown RBP7.57□□□□□ -1.2
ATG4A-204ENST00000372246 CDK11AQ9UQ88 783 aaPredicted RBP7.57□□□□□ -1.2
ATG4A-204ENST00000372246 RRBP1Q9P2E9 1410 aaKnown RBP7.57□□□□□ -1.2
ATG4A-204ENST00000372246 PLEKHG5O94827 1062 aa7.57□□□□□ -1.2
ATG4A-204ENST00000372246 CCDC136Q96JN2 1154 aa7.57□□□□□ -1.2
ATG4A-204ENST00000372246 VASPP50552 380 aaPredicted RBP7.56□□□□□ -1.2
ATG4A-204ENST00000372246 FAM9BQ8IZU0 186 aa7.56□□□□□ -1.2
ATG4A-204ENST00000372246 PHLDB1Q86UU1 1377 aa7.56□□□□□ -1.2
ATG4A-204ENST00000372246 RASEFQ8IZ41 740 aa7.54□□□□□ -1.2
ATG4A-204ENST00000372246 SETD5Q9C0A6 1442 aa7.54□□□□□ -1.2
ATG4A-204ENST00000372246 ARHGAP35Q9NRY4 1499 aa7.53□□□□□ -1.2
ATG4A-204ENST00000372246 NUBP1P53384 320 aa7.53□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms