RNA–Protein interactions for RNA: ENST00000371142.8

TM9SF3-201, Transcript of transmembrane 9 superfamily member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TM9SF3, Length 6,141 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3-201ENST00000371142 RRP7BPQ9NSQ0 103 aa29.42■■■□□ 2.3
TM9SF3-201ENST00000371142 CHMP7Q8WUX9 453 aaPredicted RBP29.39■■■□□ 2.3
TM9SF3-201ENST00000371142 C14orf37Q86TY3 774 aa29.37■■■□□ 2.29
TM9SF3-201ENST00000371142 EIF4G2P78344 907 aaKnown RBP eCLIP29.35■■■□□ 2.29
TM9SF3-201ENST00000371142 SENP3-EIF4A1A0A087X0R7 540 aa29.31■■■□□ 2.28
TM9SF3-201ENST00000371142 KCNH8Q96L42 1107 aa29.29■■■□□ 2.28
TM9SF3-201ENST00000371142 PPP1R15AO75807 674 aaPredicted RBP29.28■■■□□ 2.28
TM9SF3-201ENST00000371142 GLIPR1L2Q4G1C9 344 aa29.27■■■□□ 2.28
TM9SF3-201ENST00000371142 CLIP1P30622 1438 aa29.27■■■□□ 2.28
TM9SF3-201ENST00000371142 RGL3Q3MIN7 710 aa29.24■■■□□ 2.27
TM9SF3-201ENST00000371142 CDK11BP21127 795 aaKnown RBP29.17■■■□□ 2.26
TM9SF3-201ENST00000371142 BECN1Q14457 450 aa29.15■■■□□ 2.26
TM9SF3-201ENST00000371142 ZCCHC6Q5VYS8 1495 aaKnown RBP29.13■■■□□ 2.25
TM9SF3-201ENST00000371142 DDRGK1Q96HY6 314 aa29.12■■■□□ 2.25
TM9SF3-201ENST00000371142 NCLP19338 710 aaKnown RBP29.11■■■□□ 2.25
TM9SF3-201ENST00000371142 PPM1GO15355 546 aaPredicted RBP29.1■■■□□ 2.25
TM9SF3-201ENST00000371142 PLEKHD1A6NEE1 506 aa29.07■■■□□ 2.24
TM9SF3-201ENST00000371142 CFAP53Q96M91 514 aa29.05■■■□□ 2.24
TM9SF3-201ENST00000371142 RSF1Q96T23 1441 aaPredicted RBP29.03■■■□□ 2.24
TM9SF3-201ENST00000371142 TPRNQ4KMQ1 711 aa29.03■■■□□ 2.24
TM9SF3-201ENST00000371142 KNSTRNQ9Y448 316 aa29.02■■■□□ 2.24
TM9SF3-201ENST00000371142 TRIM44Q96DX7 344 aaPredicted RBP29.02■■■□□ 2.24
TM9SF3-201ENST00000371142 HAP1P54257 671 aaPredicted RBP29.01■■■□□ 2.23
TM9SF3-201ENST00000371142 GOLGA6L22H0YM25 854 aa28.99■■■□□ 2.23
TM9SF3-201ENST00000371142 NEUROD2Q15784 382 aa28.99■■■□□ 2.23
TM9SF3-201ENST00000371142 LAS1LQ9Y4W2 734 aaKnown RBP28.98■■■□□ 2.23
TM9SF3-201ENST00000371142 ARID4BQ4LE39 1312 aaPredicted RBP28.98■■■□□ 2.23
TM9SF3-201ENST00000371142 FTSJ3Q8IY81 847 aaKnown RBP28.97■■■□□ 2.23
TM9SF3-201ENST00000371142 SUPT16HQ9Y5B9 1047 aaKnown RBP28.96■■■□□ 2.23
TM9SF3-201ENST00000371142 CARD11Q9BXL7 1154 aa28.96■■■□□ 2.23
TM9SF3-201ENST00000371142 CEP162Q5TB80 1403 aa28.95■■■□□ 2.22
TM9SF3-201ENST00000371142 GOLGA3Q08378 1498 aa28.95■■■□□ 2.22
TM9SF3-201ENST00000371142 CFDP1Q9UEE9 299 aaPredicted RBP28.93■■■□□ 2.22
TM9SF3-201ENST00000371142 CDCA8Q53HL2 280 aa28.91■■■□□ 2.22
TM9SF3-201ENST00000371142 CASC1Q6TDU7 716 aa28.91■■■□□ 2.22
TM9SF3-201ENST00000371142 PTMAP06454 111 aaKnown RBP28.86■■■□□ 2.21
TM9SF3-201ENST00000371142 MAPK8IP3Q9UPT6 1336 aa28.86■■■□□ 2.21
TM9SF3-201ENST00000371142 ZRSR1Q15695 479 aaKnown RBP28.86■■■□□ 2.21
TM9SF3-201ENST00000371142 ANP32EQ9BTT0 268 aa28.85■■■□□ 2.21
TM9SF3-201ENST00000371142 TNNT2P45379 298 aaPredicted RBP28.85■■■□□ 2.21
TM9SF3-201ENST00000371142 TULP1O00294 542 aaPredicted RBP28.82■■■□□ 2.2
TM9SF3-201ENST00000371142 MYO15BQ96JP2 1530 aa28.82■■■□□ 2.2
TM9SF3-201ENST00000371142 LMOD2Q6P5Q4 547 aa28.81■■■□□ 2.2
TM9SF3-201ENST00000371142 FRAT1Q92837 279 aaPredicted RBP28.81■■■□□ 2.2
TM9SF3-201ENST00000371142 TAOK2Q9UL54 1235 aa28.8■■■□□ 2.2
TM9SF3-201ENST00000371142 RGS3P49796 1198 aa28.8■■■□□ 2.2
TM9SF3-201ENST00000371142 CC2D1BQ5T0F9 858 aaKnown RBP28.78■■■□□ 2.2
TM9SF3-201ENST00000371142 SIN3AQ96ST3 1273 aa28.78■■■□□ 2.2
TM9SF3-201ENST00000371142 POGKQ9P215 609 aa28.78■■■□□ 2.2
TM9SF3-201ENST00000371142 NUDCQ9Y266 331 aa28.75■■■□□ 2.19
TM9SF3-201ENST00000371142 DNTTIP2Q5QJE6 756 aaKnown RBP28.74■■■□□ 2.19
TM9SF3-201ENST00000371142 EEA1Q15075 1411 aa28.73■■■□□ 2.19
TM9SF3-201ENST00000371142 WRNQ14191 1432 aaPredicted RBP eCLIP28.69■■■□□ 2.18
TM9SF3-201ENST00000371142 U2SURPO15042 1029 aaKnown RBP28.69■■■□□ 2.18
TM9SF3-201ENST00000371142 OS9Q13438 667 aaPredicted RBP28.65■■■□□ 2.18
TM9SF3-201ENST00000371142 PPP4R2Q9NY27 417 aa28.65■■■□□ 2.18
TM9SF3-201ENST00000371142 PLCB2Q00722 1185 aa28.65■■■□□ 2.18
TM9SF3-201ENST00000371142 KIF27Q86VH2 1401 aa28.64■■■□□ 2.18
TM9SF3-201ENST00000371142 NPHP1O15259 732 aa28.62■■■□□ 2.17
TM9SF3-201ENST00000371142 HSP90AB1P08238 724 aaKnown RBP28.6■■■□□ 2.17
TM9SF3-201ENST00000371142 RB1CC1Q8TDY2 1594 aa28.57■■■□□ 2.16
TM9SF3-201ENST00000371142 BAZ1BQ9UIG0 1483 aaKnown RBP28.57■■■□□ 2.16
TM9SF3-201ENST00000371142 FGD1P98174 961 aa28.56■■■□□ 2.16
TM9SF3-201ENST00000371142 NAP1L2Q9ULW6 460 aaPredicted RBP28.56■■■□□ 2.16
TM9SF3-201ENST00000371142 CEP164Q9UPV0 1460 aa28.56■■■□□ 2.16
TM9SF3-201ENST00000371142 B4GALNT3Q6L9W6 998 aa28.56■■■□□ 2.16
TM9SF3-201ENST00000371142 RTN4Q9NQC3 1192 aaKnown RBP28.56■■■□□ 2.16
TM9SF3-201ENST00000371142 TNIKQ9UKE5 1360 aa28.55■■■□□ 2.16
TM9SF3-201ENST00000371142 KCNJ4P48050 445 aa28.53■■■□□ 2.16
TM9SF3-201ENST00000371142 DCAF11Q8TEB1 546 aa28.53■■■□□ 2.16
TM9SF3-201ENST00000371142 SOX12O15370 315 aa28.53■■■□□ 2.16
TM9SF3-201ENST00000371142 NAP1L5Q96NT1 182 aaPredicted RBP28.53■■■□□ 2.16
TM9SF3-201ENST00000371142 NOP58Q9Y2X3 529 aaKnown RBP28.52■■■□□ 2.16
TM9SF3-201ENST00000371142 CHMP4BQ9H444 224 aaKnown RBP28.5■■■□□ 2.15
TM9SF3-201ENST00000371142 TMF1P82094 1093 aa28.49■■■□□ 2.15
TM9SF3-201ENST00000371142 CCNB3Q8WWL7 1395 aa28.48■■■□□ 2.15
TM9SF3-201ENST00000371142 CCDC180Q9P1Z9 1646 aa28.48■■■□□ 2.15
TM9SF3-201ENST00000371142 MS4A1P11836 297 aa28.47■■■□□ 2.15
TM9SF3-201ENST00000371142 ERICH6BQ5W0A0 696 aa28.47■■■□□ 2.15
TM9SF3-201ENST00000371142 PNNQ9H307 717 aaKnown RBP28.46■■■□□ 2.15
TM9SF3-201ENST00000371142 SAFB2Q14151 953 aaKnown RBP eCLIP28.44■■■□□ 2.14
TM9SF3-201ENST00000371142 SRPK2P78362 688 aaKnown RBP28.43■■■□□ 2.14
TM9SF3-201ENST00000371142 GOLGA2Q08379 1002 aa28.43■■■□□ 2.14
TM9SF3-201ENST00000371142 MLECQ14165 292 aa28.42■■■□□ 2.14
TM9SF3-201ENST00000371142 ERCC6Q03468 1493 aa28.42■■■□□ 2.14
TM9SF3-201ENST00000371142 EIF4G1Q04637 1599 aaKnown RBP28.4■■■□□ 2.14
TM9SF3-201ENST00000371142 SPRYD3Q8NCJ5 442 aa28.4■■■□□ 2.14
TM9SF3-201ENST00000371142 GOLGA6L6A8MZA4 724 aa28.39■■■□□ 2.13
TM9SF3-201ENST00000371142 HSCBQ8IWL3 235 aa28.38■■■□□ 2.13
TM9SF3-201ENST00000371142 MORC1Q86VD1 984 aa28.37■■■□□ 2.13
TM9SF3-201ENST00000371142 KANK1Q14678 1352 aa28.36■■■□□ 2.13
TM9SF3-201ENST00000371142 GOLGA6L4A6NEF3 574 aa28.33■■■□□ 2.13
TM9SF3-201ENST00000371142 STK26Q9P289 416 aa28.28■■■□□ 2.12
TM9SF3-201ENST00000371142 APBB1O00213 710 aa28.27■■■□□ 2.12
TM9SF3-201ENST00000371142 HSPA5P11021 654 aaKnown RBP28.26■■■□□ 2.12
TM9SF3-201ENST00000371142 FHAD1B1AJZ9 1412 aa28.26■■■□□ 2.11
TM9SF3-201ENST00000371142 MCCP23508 829 aa28.25■■■□□ 2.11
TM9SF3-201ENST00000371142 RTF1Q92541 710 aaKnown RBP28.24■■■□□ 2.11
TM9SF3-201ENST00000371142 NRDCO43847 1150 aa28.23■■■□□ 2.11
TM9SF3-201ENST00000371142 FOXD1Q16676 465 aa28.23■■■□□ 2.11
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms