RNA–Protein interactions for RNA: ENST00000368841.6

SNX27-202, Transcript of sorting nexin family member 27, humanhuman

TSL 1 (best)

Gene SNX27, Length 7,070 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX27-202ENST00000368841 MYH16Q9H6N6 1097 aa24.2■■□□□ 1.46
SNX27-202ENST00000368841 KCNH8Q96L42 1107 aa24.17■■□□□ 1.46
SNX27-202ENST00000368841 PPM1GO15355 546 aaPredicted RBP24.16■■□□□ 1.46
SNX27-202ENST00000368841 RRP7BPQ9NSQ0 103 aa24.15■■□□□ 1.46
SNX27-202ENST00000368841 NCLP19338 710 aaKnown RBP24.14■■□□□ 1.46
SNX27-202ENST00000368841 PPP1R15AO75807 674 aaPredicted RBP24.13■■□□□ 1.45
SNX27-202ENST00000368841 HAP1P54257 671 aaPredicted RBP24.12■■□□□ 1.45
SNX27-202ENST00000368841 RGL3Q3MIN7 710 aa24.11■■□□□ 1.45
SNX27-202ENST00000368841 LAS1LQ9Y4W2 734 aaKnown RBP24.09■■□□□ 1.45
SNX27-202ENST00000368841 MIER1Q8N108 512 aa24.08■■□□□ 1.45
SNX27-202ENST00000368841 ARID4BQ4LE39 1312 aaPredicted RBP24.03■■□□□ 1.44
SNX27-202ENST00000368841 GLIPR1L2Q4G1C9 344 aa24.03■■□□□ 1.44
SNX27-202ENST00000368841 TSPY4P0CV99 314 aa24.02■■□□□ 1.44
SNX27-202ENST00000368841 TSPY10P0CW01 314 aa24.02■■□□□ 1.44
SNX27-202ENST00000368841 NEUROD2Q15784 382 aa24.01■■□□□ 1.43
SNX27-202ENST00000368841 LMOD2Q6P5Q4 547 aa23.99■■□□□ 1.43
SNX27-202ENST00000368841 CHMP7Q8WUX9 453 aaPredicted RBP23.98■■□□□ 1.43
SNX27-202ENST00000368841 TNNT2P45379 298 aaPredicted RBP23.97■■□□□ 1.43
SNX27-202ENST00000368841 MTUS2Q5JR59 1369 aa23.95■■□□□ 1.42
SNX27-202ENST00000368841 NCBP3Q53F19 620 aaKnown RBP23.94■■□□□ 1.42
SNX27-202ENST00000368841 RTN4Q9NQC3 1192 aaKnown RBP23.91■■□□□ 1.42
SNX27-202ENST00000368841 TRIM44Q96DX7 344 aaPredicted RBP23.91■■□□□ 1.42
SNX27-202ENST00000368841 NPHP1O15259 732 aa23.89■■□□□ 1.42
SNX27-202ENST00000368841 PTMAP06454 111 aaKnown RBP23.88■■□□□ 1.41
SNX27-202ENST00000368841 PLCB2Q00722 1185 aa23.85■■□□□ 1.41
SNX27-202ENST00000368841 FTSJ3Q8IY81 847 aaKnown RBP23.83■■□□□ 1.41
SNX27-202ENST00000368841 DNTTIP2Q5QJE6 756 aaKnown RBP23.83■■□□□ 1.41
SNX27-202ENST00000368841 BECN1Q14457 450 aa23.83■■□□□ 1.41
SNX27-202ENST00000368841 EIF4G2P78344 907 aaKnown RBP eCLIP23.83■■□□□ 1.41
SNX27-202ENST00000368841 NAP1L2Q9ULW6 460 aaPredicted RBP23.82■■□□□ 1.4
SNX27-202ENST00000368841 SOX12O15370 315 aa23.81■■□□□ 1.4
SNX27-202ENST00000368841 ZRSR1Q15695 479 aaKnown RBP23.8■■□□□ 1.4
SNX27-202ENST00000368841 FRAT1Q92837 279 aaPredicted RBP23.78■■□□□ 1.4
SNX27-202ENST00000368841 SUPT16HQ9Y5B9 1047 aaKnown RBP23.78■■□□□ 1.4
SNX27-202ENST00000368841 CC2D1BQ5T0F9 858 aaKnown RBP23.78■■□□□ 1.4
SNX27-202ENST00000368841 RGS3P49796 1198 aa23.77■■□□□ 1.4
SNX27-202ENST00000368841 DDRGK1Q96HY6 314 aa23.75■■□□□ 1.39
SNX27-202ENST00000368841 CASC1Q6TDU7 716 aa23.73■■□□□ 1.39
SNX27-202ENST00000368841 GOLGA6L22H0YM25 854 aa23.72■■□□□ 1.39
SNX27-202ENST00000368841 SPRYD3Q8NCJ5 442 aa23.72■■□□□ 1.39
SNX27-202ENST00000368841 AMER1Q5JTC6 1135 aaPredicted RBP23.71■■□□□ 1.39
SNX27-202ENST00000368841 KNSTRNQ9Y448 316 aa23.71■■□□□ 1.39
SNX27-202ENST00000368841 OS9Q13438 667 aaPredicted RBP23.71■■□□□ 1.39
SNX27-202ENST00000368841 CFAP53Q96M91 514 aa23.69■■□□□ 1.38
SNX27-202ENST00000368841 CLSTN1O94985 981 aa23.68■■□□□ 1.38
SNX27-202ENST00000368841 U2SURPO15042 1029 aaKnown RBP23.66■■□□□ 1.38
SNX27-202ENST00000368841 CARD11Q9BXL7 1154 aa23.66■■□□□ 1.38
SNX27-202ENST00000368841 NAP1L5Q96NT1 182 aaPredicted RBP23.65■■□□□ 1.38
SNX27-202ENST00000368841 MAPK8IP3Q9UPT6 1336 aa23.64■■□□□ 1.38
SNX27-202ENST00000368841 POGKQ9P215 609 aa23.64■■□□□ 1.37
SNX27-202ENST00000368841 ZCCHC6Q5VYS8 1495 aaKnown RBP23.63■■□□□ 1.37
SNX27-202ENST00000368841 MLECQ14165 292 aa23.62■■□□□ 1.37
SNX27-202ENST00000368841 SAFB2Q14151 953 aaKnown RBP eCLIP23.61■■□□□ 1.37
SNX27-202ENST00000368841 FGD1P98174 961 aa23.6■■□□□ 1.37
SNX27-202ENST00000368841 HSP90AB1P08238 724 aaKnown RBP23.59■■□□□ 1.37
SNX27-202ENST00000368841 CLIP1P30622 1438 aa23.58■■□□□ 1.37
SNX27-202ENST00000368841 ISY1Q9ULR0 285 aaKnown RBP23.58■■□□□ 1.37
SNX27-202ENST00000368841 PLEKHD1A6NEE1 506 aa23.58■■□□□ 1.36
SNX27-202ENST00000368841 KCNJ4P48050 445 aa23.56■■□□□ 1.36
SNX27-202ENST00000368841 SIN3AQ96ST3 1273 aa23.56■■□□□ 1.36
SNX27-202ENST00000368841 GOLGA2Q08379 1002 aa23.56■■□□□ 1.36
SNX27-202ENST00000368841 DCAF1Q9Y4B6 1507 aa23.55■■□□□ 1.36
SNX27-202ENST00000368841 APBB1O00213 710 aa23.52■■□□□ 1.36
SNX27-202ENST00000368841 CFDP1Q9UEE9 299 aaPredicted RBP23.51■■□□□ 1.35
SNX27-202ENST00000368841 B4GALNT3Q6L9W6 998 aa23.5■■□□□ 1.35
SNX27-202ENST00000368841 TRHP20396 242 aaPredicted RBP23.48■■□□□ 1.35
SNX27-202ENST00000368841 ARID3AQ99856 593 aa23.43■■□□□ 1.34
SNX27-202ENST00000368841 ZNF330Q9Y3S2 320 aaPredicted RBP23.43■■□□□ 1.34
SNX27-202ENST00000368841 ERICH6BQ5W0A0 696 aa23.42■■□□□ 1.34
SNX27-202ENST00000368841 NUDCQ9Y266 331 aa23.42■■□□□ 1.34
SNX27-202ENST00000368841 MYO15BQ96JP2 1530 aa23.41■■□□□ 1.34
SNX27-202ENST00000368841 STK26Q9P289 416 aa23.39■■□□□ 1.34
SNX27-202ENST00000368841 SRPK2P78362 688 aaKnown RBP23.37■■□□□ 1.33
SNX27-202ENST00000368841 CDCA8Q53HL2 280 aa23.37■■□□□ 1.33
SNX27-202ENST00000368841 DRC7Q8IY82 874 aa23.36■■□□□ 1.33
SNX27-202ENST00000368841 RSF1Q96T23 1441 aaPredicted RBP23.36■■□□□ 1.33
SNX27-202ENST00000368841 ANP32EQ9BTT0 268 aa23.36■■□□□ 1.33
SNX27-202ENST00000368841 NOP58Q9Y2X3 529 aaKnown RBP23.35■■□□□ 1.33
SNX27-202ENST00000368841 DCAF11Q8TEB1 546 aa23.34■■□□□ 1.33
SNX27-202ENST00000368841 ANO8Q9HCE9 1232 aaPredicted RBP23.34■■□□□ 1.33
SNX27-202ENST00000368841 CEP162Q5TB80 1403 aa23.33■■□□□ 1.33
SNX27-202ENST00000368841 GOLGA6L6A8MZA4 724 aa23.33■■□□□ 1.32
SNX27-202ENST00000368841 PAK3O75914 559 aaPredicted RBP23.33■■□□□ 1.32
SNX27-202ENST00000368841 PDE4CQ08493 712 aa23.32■■□□□ 1.32
SNX27-202ENST00000368841 EIF4G1Q04637 1599 aaKnown RBP23.32■■□□□ 1.32
SNX27-202ENST00000368841 GOLGA6L4A6NEF3 574 aa23.32■■□□□ 1.32
SNX27-202ENST00000368841 HSCBQ8IWL3 235 aa23.28■■□□□ 1.32
SNX27-202ENST00000368841 FOXD1Q16676 465 aa23.27■■□□□ 1.32
SNX27-202ENST00000368841 GNL2Q13823 731 aaKnown RBP23.26■■□□□ 1.31
SNX27-202ENST00000368841 PPP4R2Q9NY27 417 aa23.26■■□□□ 1.31
SNX27-202ENST00000368841 ZBTB4Q9P1Z0 1013 aaPredicted RBP23.26■■□□□ 1.31
SNX27-202ENST00000368841 GOLGA3Q08378 1498 aa23.25■■□□□ 1.31
SNX27-202ENST00000368841 ERCC6Q03468 1493 aa23.23■■□□□ 1.31
SNX27-202ENST00000368841 MORC1Q86VD1 984 aa23.22■■□□□ 1.31
SNX27-202ENST00000368841 GZF1Q9H116 711 aaPredicted RBP23.22■■□□□ 1.31
SNX27-202ENST00000368841 RTF1Q92541 710 aaKnown RBP23.19■■□□□ 1.3
SNX27-202ENST00000368841 NUTM2DQ5VT03 806 aaPredicted RBP23.18■■□□□ 1.3
SNX27-202ENST00000368841 TMF1P82094 1093 aa23.17■■□□□ 1.3
SNX27-202ENST00000368841 CCDC9Q9Y3X0 531 aaKnown RBP23.17■■□□□ 1.3
SNX27-202ENST00000368841 CSB-PGBD3P0DP91 1061 aa23.16■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 10 ms