RNA–Protein interactions for RNA: ENST00000364739.1

RNU4-28P-201, Transcript of RNA, U4 small nuclear 28, pseudogene, humanhuman

BASIC

Gene RNU4-28P, Length 141 nt, Biotype snRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-28P-201ENST00000364739 PHF12Q96QT6 1004 aa13.83□□□□□ -0.2
RNU4-28P-201ENST00000364739 ZBTB47Q9UFB7 747 aaPredicted RBP13.75□□□□□ -0.21
RNU4-28P-201ENST00000364739 NUBP1P53384 320 aa13.71□□□□□ -0.21
RNU4-28P-201ENST00000364739 RASEFQ8IZ41 740 aa13.7□□□□□ -0.22
RNU4-28P-201ENST00000364739 TSPYL2Q9H2G4 693 aaPredicted RBP13.68□□□□□ -0.22
RNU4-28P-201ENST00000364739 MS4A3Q96HJ5 214 aa13.67□□□□□ -0.22
RNU4-28P-201ENST00000364739 SPOCK2Q92563 424 aa13.66□□□□□ -0.22
RNU4-28P-201ENST00000364739 ASTLQ6HA08 431 aaPredicted RBP13.64□□□□□ -0.23
RNU4-28P-201ENST00000364739 PELP1Q8IZL8 1130 aaKnown RBP13.62□□□□□ -0.23
RNU4-28P-201ENST00000364739 OTUD5Q96G74 571 aa13.62□□□□□ -0.23
RNU4-28P-201ENST00000364739 POTEB2H3BUK9 544 aa13.61□□□□□ -0.23
RNU4-28P-201ENST00000364739 CCDC61Q9Y6R9 512 aa13.61□□□□□ -0.23
RNU4-28P-201ENST00000364739 ATMINO43313 823 aaPredicted RBP13.59□□□□□ -0.23
RNU4-28P-201ENST00000364739 DCAF8Q5TAQ9 597 aa13.59□□□□□ -0.23
RNU4-28P-201ENST00000364739 SLC39A7Q92504 469 aa13.57□□□□□ -0.24
RNU4-28P-201ENST00000364739 C7P10643 843 aa13.56□□□□□ -0.24
RNU4-28P-201ENST00000364739 METRNQ9UJH8 293 aa13.55□□□□□ -0.24
RNU4-28P-201ENST00000364739 FAM212AQ96EL1 285 aa13.54□□□□□ -0.24
RNU4-28P-201ENST00000364739 KIF12Q96FN5 646 aa13.54□□□□□ -0.24
RNU4-28P-201ENST00000364739 CIZ1Q9ULV3 898 aaPredicted RBP13.54□□□□□ -0.24
RNU4-28P-201ENST00000364739 PYGBP11216 843 aa13.45□□□□□ -0.26
RNU4-28P-201ENST00000364739 ATN1P54259 1190 aaPredicted RBP13.45□□□□□ -0.26
RNU4-28P-201ENST00000364739 GSE1Q14687 1217 aa13.45□□□□□ -0.26
RNU4-28P-201ENST00000364739 MAP3K13O43283 966 aa13.43□□□□□ -0.26
RNU4-28P-201ENST00000364739 MAMSTRQ6ZN01 415 aa13.43□□□□□ -0.26
RNU4-28P-201ENST00000364739 TIE1P35590 1138 aa13.42□□□□□ -0.26
RNU4-28P-201ENST00000364739 BMP2KQ9NSY1 1161 aaPredicted RBP13.42□□□□□ -0.26
RNU4-28P-201ENST00000364739 POTEJP0CG39 1038 aa13.4□□□□□ -0.26
RNU4-28P-201ENST00000364739 TRPC6Q9Y210 931 aa13.38□□□□□ -0.27
RNU4-28P-201ENST00000364739 SGIP1Q9BQI5 828 aa13.37□□□□□ -0.27
RNU4-28P-201ENST00000364739 PKD2Q13563 968 aa13.36□□□□□ -0.27
RNU4-28P-201ENST00000364739 POTEMA6NI47 508 aa13.32□□□□□ -0.28
RNU4-28P-201ENST00000364739 SCUBE2Q9NQ36 999 aa13.32□□□□□ -0.28
RNU4-28P-201ENST00000364739 PLSCR2Q9NRY7 297 aa13.32□□□□□ -0.28
RNU4-28P-201ENST00000364739 TTLL13PA6NNM8 815 aa13.31□□□□□ -0.28
RNU4-28P-201ENST00000364739 PCDHB13Q9Y5F0 798 aa13.31□□□□□ -0.28
RNU4-28P-201ENST00000364739 POTEFA5A3E0 1075 aa13.3□□□□□ -0.28
RNU4-28P-201ENST00000364739 POTEGQ6S5H5 508 aa13.29□□□□□ -0.28
RNU4-28P-201ENST00000364739 ECM2O94769 699 aaPredicted RBP13.28□□□□□ -0.28
RNU4-28P-201ENST00000364739 IFNL1Q8IU54 200 aa13.28□□□□□ -0.28
RNU4-28P-201ENST00000364739 PCDHB8Q9UN66 801 aa13.28□□□□□ -0.28
RNU4-28P-201ENST00000364739 CHRM1P11229 460 aaPredicted RBP13.27□□□□□ -0.29
RNU4-28P-201ENST00000364739 IER5LQ5T953 404 aa13.25□□□□□ -0.29
RNU4-28P-201ENST00000364739 RTN4Q9NQC3 1192 aaKnown RBP13.24□□□□□ -0.29
RNU4-28P-201ENST00000364739 SEC24BO95487 1268 aa13.23□□□□□ -0.29
RNU4-28P-201ENST00000364739 TRIM35Q9UPQ4 493 aa13.22□□□□□ -0.29
RNU4-28P-201ENST00000364739 TRIM41Q8WV44 630 aa13.21□□□□□ -0.29
RNU4-28P-201ENST00000364739 RNF25Q96BH1 459 aaPredicted RBP13.21□□□□□ -0.29
RNU4-28P-201ENST00000364739 COLQQ9Y215 455 aaPredicted RBP13.21□□□□□ -0.29
RNU4-28P-201ENST00000364739 PCDH10Q9P2E7 1040 aa13.2□□□□□ -0.3
RNU4-28P-201ENST00000364739 RGL2O15211 777 aa13.19□□□□□ -0.3
RNU4-28P-201ENST00000364739 AMER1Q5JTC6 1135 aaPredicted RBP13.15□□□□□ -0.3
RNU4-28P-201ENST00000364739 LCE2DQ5TA82 110 aaPredicted RBP13.15□□□□□ -0.3
RNU4-28P-201ENST00000364739 ZNF467Q7Z7K2 595 aaPredicted RBP13.14□□□□□ -0.31
RNU4-28P-201ENST00000364739 FAM163AQ96GL9 167 aaPredicted RBP13.13□□□□□ -0.31
RNU4-28P-201ENST00000364739 TMEM106CQ9BVX2 250 aa13.13□□□□□ -0.31
RNU4-28P-201ENST00000364739 RIOK3O14730 519 aaKnown RBP13.11□□□□□ -0.31
RNU4-28P-201ENST00000364739 PSEN1P49768 467 aa13.08□□□□□ -0.32
RNU4-28P-201ENST00000364739 PLCG2P16885 1265 aa13.05□□□□□ -0.32
RNU4-28P-201ENST00000364739 PDAP1Q13442 181 aaKnown RBP13.05□□□□□ -0.32
RNU4-28P-201ENST00000364739 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.03□□□□□ -0.32
RNU4-28P-201ENST00000364739 ZFP91Q96JP5 570 aaPredicted RBP13.03□□□□□ -0.32
RNU4-28P-201ENST00000364739 IRX5P78411 483 aaPredicted RBP13.02□□□□□ -0.33
RNU4-28P-201ENST00000364739 VGFO15240 615 aaPredicted RBP13.01□□□□□ -0.33
RNU4-28P-201ENST00000364739 DCAF8L2P0C7V8 631 aa13□□□□□ -0.33
RNU4-28P-201ENST00000364739 SLAIN1Q8ND83 568 aa12.98□□□□□ -0.33
RNU4-28P-201ENST00000364739 OCEL1Q9H607 264 aa12.97□□□□□ -0.33
RNU4-28P-201ENST00000364739 CABP2Q9NPB3 220 aa12.95□□□□□ -0.34
RNU4-28P-201ENST00000364739 BCL11BQ9C0K0 894 aaPredicted RBP12.94□□□□□ -0.34
RNU4-28P-201ENST00000364739 STK25O00506 426 aa12.93□□□□□ -0.34
RNU4-28P-201ENST00000364739 STK24Q9Y6E0 443 aa12.92□□□□□ -0.34
RNU4-28P-201ENST00000364739 CHGAP10645 457 aaKnown RBP12.91□□□□□ -0.34
RNU4-28P-201ENST00000364739 TAOK2Q9UL54 1235 aa12.91□□□□□ -0.34
RNU4-28P-201ENST00000364739 GOLGA2Q08379 1002 aa12.88□□□□□ -0.35
RNU4-28P-201ENST00000364739 EFCAB3Q8N7B9 438 aa12.87□□□□□ -0.35
RNU4-28P-201ENST00000364739 ST18O60284 1047 aa12.86□□□□□ -0.35
RNU4-28P-201ENST00000364739 MKRN3Q13064 507 aaKnown RBP12.85□□□□□ -0.35
RNU4-28P-201ENST00000364739 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.84□□□□□ -0.35
RNU4-28P-201ENST00000364739 CDAN1Q8IWY9 1227 aa12.83□□□□□ -0.36
RNU4-28P-201ENST00000364739 SNPHO15079 494 aa12.81□□□□□ -0.36
RNU4-28P-201ENST00000364739 HS6ST3Q8IZP7 471 aa12.81□□□□□ -0.36
RNU4-28P-201ENST00000364739 PDCD7Q8N8D1 485 aaKnown RBP12.8□□□□□ -0.36
RNU4-28P-201ENST00000364739 TMEM121BQ9BXQ6 578 aaPredicted RBP12.79□□□□□ -0.36
RNU4-28P-201ENST00000364739 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.78□□□□□ -0.36
RNU4-28P-201ENST00000364739 L3MBTL3Q96JM7 780 aaPredicted RBP12.76□□□□□ -0.37
RNU4-28P-201ENST00000364739 PHF8Q9UPP1 1060 aa12.76□□□□□ -0.37
RNU4-28P-201ENST00000364739 DPY19L2Q6NUT2 758 aa12.74□□□□□ -0.37
RNU4-28P-201ENST00000364739 NKX1-1Q15270 411 aaPredicted RBP12.73□□□□□ -0.37
RNU4-28P-201ENST00000364739 C3orf67Q6ZVT6 689 aa12.73□□□□□ -0.37
RNU4-28P-201ENST00000364739 MFRPQ9BY79 579 aa12.72□□□□□ -0.37
RNU4-28P-201ENST00000364739 SOX12O15370 315 aa12.71□□□□□ -0.37
RNU4-28P-201ENST00000364739 ILDR1Q86SU0 546 aaPredicted RBP12.69□□□□□ -0.38
RNU4-28P-201ENST00000364739 MS4A4AQ96JQ5 239 aa12.68□□□□□ -0.38
RNU4-28P-201ENST00000364739 FBXO22Q8NEZ5 403 aa12.66□□□□□ -0.38
RNU4-28P-201ENST00000364739 NLRP6P59044 892 aa12.65□□□□□ -0.38
RNU4-28P-201ENST00000364739 DNAJC5Q9H3Z4 198 aa12.63□□□□□ -0.39
RNU4-28P-201ENST00000364739 MARVELD3Q96A59 401 aa12.61□□□□□ -0.39
RNU4-28P-201ENST00000364739 PPP1R37O75864 691 aa12.6□□□□□ -0.39
RNU4-28P-201ENST00000364739 BBXQ8WY36 941 aaPredicted RBP12.6□□□□□ -0.39
RNU4-28P-201ENST00000364739 GTPBP6O43824 516 aaPredicted RBP12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 9.4 ms