RNA–Protein interactions for RNA: ENST00000361138.6

SMC5-201, Transcript of structural maintenance of chromosomes 5, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMC5, Length 5,980 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC5-201ENST00000361138 CHIC2Q9UKJ5 165 aa18.62■□□□□ 0.57
SMC5-201ENST00000361138 ZNF777Q9ULD5 760 aaPredicted RBP18.6■□□□□ 0.57
SMC5-201ENST00000361138 WRNQ14191 1432 aaPredicted RBP eCLIP18.59■□□□□ 0.57
SMC5-201ENST00000361138 PPM1GO15355 546 aaPredicted RBP18.58■□□□□ 0.57
SMC5-201ENST00000361138 HSP90AA1P07900 732 aaKnown RBP18.58■□□□□ 0.56
SMC5-201ENST00000361138 ARXQ96QS3 562 aa18.58■□□□□ 0.56
SMC5-201ENST00000361138 CCER2I3L3R5 266 aa18.56■□□□□ 0.56
SMC5-201ENST00000361138 RTN4Q9NQC3 1192 aaKnown RBP18.55■□□□□ 0.56
SMC5-201ENST00000361138 MTUS2Q5JR59 1369 aa18.54■□□□□ 0.56
SMC5-201ENST00000361138 NEFMP07197 916 aa18.54■□□□□ 0.56
SMC5-201ENST00000361138 SIN3AQ96ST3 1273 aa18.53■□□□□ 0.56
SMC5-201ENST00000361138 LAS1LQ9Y4W2 734 aaKnown RBP18.51■□□□□ 0.55
SMC5-201ENST00000361138 B4GALNT3Q6L9W6 998 aa18.51■□□□□ 0.55
SMC5-201ENST00000361138 WDR43Q15061 677 aaKnown RBP eCLIP18.5■□□□□ 0.55
SMC5-201ENST00000361138 SOGA1O94964 1423 aa18.49■□□□□ 0.55
SMC5-201ENST00000361138 BECN1Q14457 450 aa18.48■□□□□ 0.55
SMC5-201ENST00000361138 CCNB3Q8WWL7 1395 aa18.47■□□□□ 0.55
SMC5-201ENST00000361138 RRP7BPQ9NSQ0 103 aa18.45■□□□□ 0.54
SMC5-201ENST00000361138 VPS8Q8N3P4 1428 aa18.43■□□□□ 0.54
SMC5-201ENST00000361138 BAZ1BQ9UIG0 1483 aaKnown RBP18.42■□□□□ 0.54
SMC5-201ENST00000361138 ERICH6BQ5W0A0 696 aa18.41■□□□□ 0.54
SMC5-201ENST00000361138 TIMELESSQ9UNS1 1208 aa18.41■□□□□ 0.54
SMC5-201ENST00000361138 KDM2AQ9Y2K7 1162 aa18.4■□□□□ 0.54
SMC5-201ENST00000361138 SENP3-EIF4A1A0A087X0R7 540 aa18.37■□□□□ 0.53
SMC5-201ENST00000361138 TRIM44Q96DX7 344 aaPredicted RBP18.37■□□□□ 0.53
SMC5-201ENST00000361138 BAZ1AQ9NRL2 1556 aaPredicted RBP18.36■□□□□ 0.53
SMC5-201ENST00000361138 SETD5Q9C0A6 1442 aa18.35■□□□□ 0.53
SMC5-201ENST00000361138 ABCC8Q09428 1581 aa18.35■□□□□ 0.53
SMC5-201ENST00000361138 CECR2Q9BXF3 1484 aa18.35■□□□□ 0.53
SMC5-201ENST00000361138 KIF27Q86VH2 1401 aa18.34■□□□□ 0.53
SMC5-201ENST00000361138 CCDC88BA6NC98 1476 aa18.31■□□□□ 0.52
SMC5-201ENST00000361138 NAP1L5Q96NT1 182 aaPredicted RBP18.3■□□□□ 0.52
SMC5-201ENST00000361138 RAB3GAP2Q9H2M9 1393 aa18.25■□□□□ 0.51
SMC5-201ENST00000361138 MROH2BQ7Z745 1585 aa18.24■□□□□ 0.51
SMC5-201ENST00000361138 KANK4Q5T7N3 995 aaPredicted RBP18.24■□□□□ 0.51
SMC5-201ENST00000361138 HSPA5P11021 654 aaKnown RBP18.23■□□□□ 0.51
SMC5-201ENST00000361138 SLC24A1O60721 1099 aa18.22■□□□□ 0.51
SMC5-201ENST00000361138 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.22■□□□□ 0.513e-7■■■■□ 19.9
SMC5-201ENST00000361138 ERCC6Q03468 1493 aa18.22■□□□□ 0.51
SMC5-201ENST00000361138 IPO9Q96P70 1041 aaKnown RBP18.22■□□□□ 0.51
SMC5-201ENST00000361138 GOLGA6L22H0YM25 854 aa18.21■□□□□ 0.51
SMC5-201ENST00000361138 CARD11Q9BXL7 1154 aa18.2■□□□□ 0.5
SMC5-201ENST00000361138 KCNH8Q96L42 1107 aa18.2■□□□□ 0.5
SMC5-201ENST00000361138 DHX57Q6P158 1386 aaKnown RBP18.19■□□□□ 0.5
SMC5-201ENST00000361138 RGS3P49796 1198 aa18.19■□□□□ 0.5
SMC5-201ENST00000361138 FHAD1B1AJZ9 1412 aa18.19■□□□□ 0.5
SMC5-201ENST00000361138 TSPY4P0CV99 314 aa18.19■□□□□ 0.5
SMC5-201ENST00000361138 TSPY10P0CW01 314 aa18.19■□□□□ 0.5
SMC5-201ENST00000361138 CHMP7Q8WUX9 453 aaPredicted RBP18.17■□□□□ 0.5
SMC5-201ENST00000361138 FANCIQ9NVI1 1328 aa18.17■□□□□ 0.5
SMC5-201ENST00000361138 L1TD1Q5T7N2 865 aaKnown RBP18.17■□□□□ 0.5
SMC5-201ENST00000361138 ZBTB4Q9P1Z0 1013 aaPredicted RBP18.15■□□□□ 0.5
SMC5-201ENST00000361138 ARHGAP35Q9NRY4 1499 aa18.14■□□□□ 0.5
SMC5-201ENST00000361138 TCERG1O14776 1098 aaKnown RBP18.14■□□□□ 0.49
SMC5-201ENST00000361138 MYH16Q9H6N6 1097 aa18.13■□□□□ 0.49
SMC5-201ENST00000361138 WIZO95785 1651 aa18.12■□□□□ 0.49
SMC5-201ENST00000361138 CHGAP10645 457 aaKnown RBP18.12■□□□□ 0.49
SMC5-201ENST00000361138 PPP1R15AO75807 674 aaPredicted RBP18.12■□□□□ 0.49
SMC5-201ENST00000361138 KNSTRNQ9Y448 316 aa18.11■□□□□ 0.49
SMC5-201ENST00000361138 NCLP19338 710 aaKnown RBP18.1■□□□□ 0.49
SMC5-201ENST00000361138 TNNT2P45379 298 aaPredicted RBP18.08■□□□□ 0.49
SMC5-201ENST00000361138 NUDCQ9Y266 331 aa18.07■□□□□ 0.48
SMC5-201ENST00000361138 CC2D1BQ5T0F9 858 aaKnown RBP18.06■□□□□ 0.48
SMC5-201ENST00000361138 TOP2AP11388 1531 aaKnown RBP18.06■□□□□ 0.48
SMC5-201ENST00000361138 NPM1P06748 294 aaKnown RBP eCLIP18.05■□□□□ 0.48
SMC5-201ENST00000361138 RGL3Q3MIN7 710 aa18.04■□□□□ 0.48
SMC5-201ENST00000361138 CDCA8Q53HL2 280 aa18.04■□□□□ 0.48
SMC5-201ENST00000361138 RCAN3Q9UKA8 241 aa18.04■□□□□ 0.48
SMC5-201ENST00000361138 PTMAP06454 111 aaKnown RBP18.04■□□□□ 0.48
SMC5-201ENST00000361138 FTSJ3Q8IY81 847 aaKnown RBP18.04■□□□□ 0.48
SMC5-201ENST00000361138 USP35Q9P2H5 1018 aa18.01■□□□□ 0.47
SMC5-201ENST00000361138 DNTTIP2Q5QJE6 756 aaKnown RBP18■□□□□ 0.47
SMC5-201ENST00000361138 HSP90AB1P08238 724 aaKnown RBP18■□□□□ 0.47
SMC5-201ENST00000361138 CARMIL1Q5VZK9 1371 aa17.99■□□□□ 0.47
SMC5-201ENST00000361138 FRAT1Q92837 279 aaPredicted RBP17.99■□□□□ 0.47
SMC5-201ENST00000361138 SMARCA2P51531 1590 aa17.99■□□□□ 0.47
SMC5-201ENST00000361138 CFDP1Q9UEE9 299 aaPredicted RBP17.98■□□□□ 0.47
SMC5-201ENST00000361138 HSCBQ8IWL3 235 aa17.97■□□□□ 0.47
SMC5-201ENST00000361138 CFAP53Q96M91 514 aa17.97■□□□□ 0.47
SMC5-201ENST00000361138 RAPGEF2Q9Y4G8 1499 aa17.96■□□□□ 0.47
SMC5-201ENST00000361138 CUX2O14529 1486 aa17.96■□□□□ 0.47
SMC5-201ENST00000361138 KTN1Q86UP2 1357 aaKnown RBP17.95■□□□□ 0.46
SMC5-201ENST00000361138 CASC1Q6TDU7 716 aa17.95■□□□□ 0.46
SMC5-201ENST00000361138 RALBP1Q15311 655 aa17.94■□□□□ 0.46
SMC5-201ENST00000361138 SPRYD3Q8NCJ5 442 aa17.93■□□□□ 0.46
SMC5-201ENST00000361138 RUSC2Q8N2Y8 1516 aa17.93■□□□□ 0.46
SMC5-201ENST00000361138 MSNP26038 577 aaKnown RBP17.93■□□□□ 0.46
SMC5-201ENST00000361138 NEUROD2Q15784 382 aa17.92■□□□□ 0.46
SMC5-201ENST00000361138 ZBED9Q6R2W3 1325 aa17.91■□□□□ 0.46
SMC5-201ENST00000361138 TMF1P82094 1093 aa17.91■□□□□ 0.46
SMC5-201ENST00000361138 FOXD1Q16676 465 aa17.91■□□□□ 0.46
SMC5-201ENST00000361138 FMN1Q68DA7 1419 aa17.9■□□□□ 0.46
SMC5-201ENST00000361138 MPHOSPH9Q99550 1183 aa17.9■□□□□ 0.46
SMC5-201ENST00000361138 MS4A1P11836 297 aa17.89■□□□□ 0.46
SMC5-201ENST00000361138 DCAF11Q8TEB1 546 aa17.89■□□□□ 0.46
SMC5-201ENST00000361138 PNNQ9H307 717 aaKnown RBP17.89■□□□□ 0.46
SMC5-201ENST00000361138 RSPH6AQ9H0K4 717 aa17.89■□□□□ 0.45
SMC5-201ENST00000361138 PLEKHD1A6NEE1 506 aa17.88■□□□□ 0.45
SMC5-201ENST00000361138 GSE1Q14687 1217 aa17.88■□□□□ 0.45
SMC5-201ENST00000361138 GOLGA6L3A6NEY3 463 aa17.87■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 60.7 ms