RNA–Protein interactions for RNA: ENST00000348165.9

UBE3C-201, Transcript of ubiquitin protein ligase E3C, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UBE3C, Length 5,229 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3C-201ENST00000348165 EEA1Q15075 1411 aa25.03■■□□□ 1.6
UBE3C-201ENST00000348165 MYO15BQ96JP2 1530 aa25.01■■□□□ 1.59
UBE3C-201ENST00000348165 EIF4G2P78344 907 aaKnown RBP eCLIP25.01■■□□□ 1.59
UBE3C-201ENST00000348165 MIER1Q8N108 512 aa24.99■■□□□ 1.59
UBE3C-201ENST00000348165 NACADO15069 1562 aa24.98■■□□□ 1.59
UBE3C-201ENST00000348165 CFDP1Q9UEE9 299 aaPredicted RBP24.98■■□□□ 1.59
UBE3C-201ENST00000348165 KIF27Q86VH2 1401 aa24.96■■□□□ 1.59
UBE3C-201ENST00000348165 SCAF1Q9H7N4 1312 aaKnown RBP24.96■■□□□ 1.59
UBE3C-201ENST00000348165 GLIPR1L2Q4G1C9 344 aa24.95■■□□□ 1.59
UBE3C-201ENST00000348165 PLEKHG5O94827 1062 aa24.95■■□□□ 1.58
UBE3C-201ENST00000348165 CCDC136Q96JN2 1154 aa24.93■■□□□ 1.58
UBE3C-201ENST00000348165 PPP1R15AO75807 674 aaPredicted RBP24.93■■□□□ 1.58
UBE3C-201ENST00000348165 HSP90AA1P07900 732 aaKnown RBP24.91■■□□□ 1.58
UBE3C-201ENST00000348165 GOLGA6L2Q8N9W4 650 aaPredicted RBP24.87■■□□□ 1.57
UBE3C-201ENST00000348165 UPF2Q9HAU5 1272 aaKnown RBP24.87■■□□□ 1.57
UBE3C-201ENST00000348165 IRX6P78412 446 aaPredicted RBP24.86■■□□□ 1.57
UBE3C-201ENST00000348165 TNIKQ9UKE5 1360 aa24.84■■□□□ 1.57
UBE3C-201ENST00000348165 CECR2Q9BXF3 1484 aa24.83■■□□□ 1.57
UBE3C-201ENST00000348165 C14orf37Q86TY3 774 aa24.82■■□□□ 1.56
UBE3C-201ENST00000348165 ZBTB7CA1YPR0 619 aa24.82■■□□□ 1.56
UBE3C-201ENST00000348165 SENP3-EIF4A1A0A087X0R7 540 aa24.81■■□□□ 1.56
UBE3C-201ENST00000348165 ARID4BQ4LE39 1312 aaPredicted RBP24.81■■□□□ 1.56
UBE3C-201ENST00000348165 CEP164Q9UPV0 1460 aa24.8■■□□□ 1.56
UBE3C-201ENST00000348165 A0A0G2JS52 829 aa24.79■■□□□ 1.56
UBE3C-201ENST00000348165 ERCC6Q03468 1493 aa24.77■■□□□ 1.56
UBE3C-201ENST00000348165 SIN3AQ96ST3 1273 aa24.73■■□□□ 1.55
UBE3C-201ENST00000348165 BAZ1AQ9NRL2 1556 aaPredicted RBP24.72■■□□□ 1.55
UBE3C-201ENST00000348165 CARD11Q9BXL7 1154 aa24.71■■□□□ 1.55
UBE3C-201ENST00000348165 PPM1GO15355 546 aaPredicted RBP24.65■■□□□ 1.54
UBE3C-201ENST00000348165 KNSTRNQ9Y448 316 aa24.64■■□□□ 1.54
UBE3C-201ENST00000348165 CARMIL1Q5VZK9 1371 aa24.63■■□□□ 1.53
UBE3C-201ENST00000348165 SOGA1O94964 1423 aa24.61■■□□□ 1.53
UBE3C-201ENST00000348165 CUX2O14529 1486 aa24.6■■□□□ 1.53
UBE3C-201ENST00000348165 CDCA8Q53HL2 280 aa24.6■■□□□ 1.53
UBE3C-201ENST00000348165 ANP32BQ92688 251 aaKnown RBP24.59■■□□□ 1.53
UBE3C-201ENST00000348165 MYH16Q9H6N6 1097 aa24.58■■□□□ 1.53
UBE3C-201ENST00000348165 CCNB3Q8WWL7 1395 aa24.57■■□□□ 1.52
UBE3C-201ENST00000348165 CFAP53Q96M91 514 aa24.57■■□□□ 1.52
UBE3C-201ENST00000348165 ANP32EQ9BTT0 268 aa24.56■■□□□ 1.52
UBE3C-201ENST00000348165 NEUROD2Q15784 382 aa24.54■■□□□ 1.52
UBE3C-201ENST00000348165 POGKQ9P215 609 aa24.52■■□□□ 1.52
UBE3C-201ENST00000348165 NBR1Q14596 966 aa24.51■■□□□ 1.51
UBE3C-201ENST00000348165 HAP1P54257 671 aaPredicted RBP24.51■■□□□ 1.51
UBE3C-201ENST00000348165 EIF4G1Q04637 1599 aaKnown RBP24.51■■□□□ 1.51
UBE3C-201ENST00000348165 FHAD1B1AJZ9 1412 aa24.49■■□□□ 1.51
UBE3C-201ENST00000348165 TNNT2P45379 298 aaPredicted RBP24.48■■□□□ 1.51
UBE3C-201ENST00000348165 ARXQ96QS3 562 aa24.47■■□□□ 1.51
UBE3C-201ENST00000348165 LMOD2Q6P5Q4 547 aa24.47■■□□□ 1.51
UBE3C-201ENST00000348165 DCAF11Q8TEB1 546 aa24.46■■□□□ 1.51
UBE3C-201ENST00000348165 MLECQ14165 292 aa24.45■■□□□ 1.5
UBE3C-201ENST00000348165 SUPT16HQ9Y5B9 1047 aaKnown RBP24.43■■□□□ 1.5
UBE3C-201ENST00000348165 CC2D1BQ5T0F9 858 aaKnown RBP24.41■■□□□ 1.5
UBE3C-201ENST00000348165 MROH2BQ7Z745 1585 aa24.41■■□□□ 1.5
UBE3C-201ENST00000348165 LAS1LQ9Y4W2 734 aaKnown RBP24.4■■□□□ 1.5
UBE3C-201ENST00000348165 CCDC88BA6NC98 1476 aa24.39■■□□□ 1.49
UBE3C-201ENST00000348165 TRHP20396 242 aaPredicted RBP24.38■■□□□ 1.49
UBE3C-201ENST00000348165 TDRD9Q8NDG6 1382 aaKnown RBP24.38■■□□□ 1.49
UBE3C-201ENST00000348165 KANK4Q5T7N3 995 aaPredicted RBP24.37■■□□□ 1.49
UBE3C-201ENST00000348165 MAPK8IP3Q9UPT6 1336 aa24.36■■□□□ 1.49
UBE3C-201ENST00000348165 NUDCQ9Y266 331 aa24.36■■□□□ 1.49
UBE3C-201ENST00000348165 GGT6Q6P531 493 aa24.34■■□□□ 1.49
UBE3C-201ENST00000348165 FTSJ3Q8IY81 847 aaKnown RBP24.32■■□□□ 1.48
UBE3C-201ENST00000348165 ABCC8Q09428 1581 aa24.31■■□□□ 1.48
UBE3C-201ENST00000348165 U2SURPO15042 1029 aaKnown RBP24.31■■□□□ 1.48
UBE3C-201ENST00000348165 FOXD1Q16676 465 aa24.3■■□□□ 1.48
UBE3C-201ENST00000348165 SAFB2Q14151 953 aaKnown RBP eCLIP24.3■■□□□ 1.487e-7■■□□□ 14.5
UBE3C-201ENST00000348165 TMF1P82094 1093 aa24.28■■□□□ 1.48
UBE3C-201ENST00000348165 KANK1Q14678 1352 aa24.27■■□□□ 1.48
UBE3C-201ENST00000348165 PKD2Q13563 968 aa24.27■■□□□ 1.48
UBE3C-201ENST00000348165 FRAT1Q92837 279 aaPredicted RBP24.27■■□□□ 1.48
UBE3C-201ENST00000348165 VPS8Q8N3P4 1428 aa24.25■■□□□ 1.47
UBE3C-201ENST00000348165 PDS5BQ9NTI5 1447 aa24.25■■□□□ 1.47
UBE3C-201ENST00000348165 SOX12O15370 315 aa24.25■■□□□ 1.47
UBE3C-201ENST00000348165 SRPK2P78362 688 aaKnown RBP24.23■■□□□ 1.47
UBE3C-201ENST00000348165 SETD5Q9C0A6 1442 aa24.21■■□□□ 1.47
UBE3C-201ENST00000348165 BECN1Q14457 450 aa24.2■■□□□ 1.46
UBE3C-201ENST00000348165 CARMIL2Q6F5E8 1435 aa24.19■■□□□ 1.46
UBE3C-201ENST00000348165 ARHGAP35Q9NRY4 1499 aa24.19■■□□□ 1.46
UBE3C-201ENST00000348165 TIMELESSQ9UNS1 1208 aa24.18■■□□□ 1.46
UBE3C-201ENST00000348165 STK26Q9P289 416 aa24.18■■□□□ 1.46
UBE3C-201ENST00000348165 RGS3P49796 1198 aa24.17■■□□□ 1.46
UBE3C-201ENST00000348165 HSPA5P11021 654 aaKnown RBP24.16■■□□□ 1.46
UBE3C-201ENST00000348165 SMARCA2P51531 1590 aa24.16■■□□□ 1.46
UBE3C-201ENST00000348165 HDGFP51858 240 aaKnown RBP24.15■■□□□ 1.46
UBE3C-201ENST00000348165 DDRGK1Q96HY6 314 aa24.13■■□□□ 1.45
UBE3C-201ENST00000348165 EFCAB2Q5VUJ9 269 aa24.13■■□□□ 1.45
UBE3C-201ENST00000348165 MORC1Q86VD1 984 aa24.12■■□□□ 1.45
UBE3C-201ENST00000348165 MPHOSPH9Q99550 1183 aa24.1■■□□□ 1.45
UBE3C-201ENST00000348165 NUP155O75694 1391 aa24.09■■□□□ 1.45
UBE3C-201ENST00000348165 PPP4R2Q9NY27 417 aa24.09■■□□□ 1.45
UBE3C-201ENST00000348165 FMN1Q68DA7 1419 aa24.07■■□□□ 1.44
UBE3C-201ENST00000348165 B4GALNT3Q6L9W6 998 aa24.05■■□□□ 1.44
UBE3C-201ENST00000348165 CADPSQ9ULU8 1353 aa24.05■■□□□ 1.44
UBE3C-201ENST00000348165 NCLP19338 710 aaKnown RBP24.05■■□□□ 1.44
UBE3C-201ENST00000348165 RAB3GAP2Q9H2M9 1393 aa24.05■■□□□ 1.44
UBE3C-201ENST00000348165 CASC1Q6TDU7 716 aa24.05■■□□□ 1.44
UBE3C-201ENST00000348165 PNNQ9H307 717 aaKnown RBP24.04■■□□□ 1.44
UBE3C-201ENST00000348165 HNRNPMP52272 730 aaKnown RBP eCLIP24.03■■□□□ 1.448e-7■■■■□ 19.9
UBE3C-201ENST00000348165 KIF3BO15066 747 aa24.03■■□□□ 1.44
UBE3C-201ENST00000348165 GOLGA6L22H0YM25 854 aa24.01■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms