RNA–Protein interactions for RNA: ENST00000340829.9

CDK13-202, Transcript of cyclin dependent kinase 13, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene CDK13, Length 5,066 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDK13-202ENST00000340829 ABCC8Q09428 1581 aa26.25■■□□□ 1.79
CDK13-202ENST00000340829 ANP32AP39687 249 aaKnown RBP26.23■■□□□ 1.79
CDK13-202ENST00000340829 EIF4G2P78344 907 aaKnown RBP eCLIP26.23■■□□□ 1.79
CDK13-202ENST00000340829 NPM2Q86SE8 214 aaKnown RBP26.23■■□□□ 1.79
CDK13-202ENST00000340829 NPM1P06748 294 aaKnown RBP eCLIP26.22■■□□□ 1.79
CDK13-202ENST00000340829 SLC24A1O60721 1099 aa26.2■■□□□ 1.78
CDK13-202ENST00000340829 SIN3AQ96ST3 1273 aa26.15■■□□□ 1.78
CDK13-202ENST00000340829 IRX6P78412 446 aaPredicted RBP26.14■■□□□ 1.77
CDK13-202ENST00000340829 STAG3Q9UJ98 1225 aa26.13■■□□□ 1.77
CDK13-202ENST00000340829 PLEKHD1A6NEE1 506 aa26.12■■□□□ 1.77
CDK13-202ENST00000340829 CUX2O14529 1486 aa26.09■■□□□ 1.77
CDK13-202ENST00000340829 KCNH8Q96L42 1107 aa26.09■■□□□ 1.77
CDK13-202ENST00000340829 ESF1Q9H501 851 aaKnown RBP26.09■■□□□ 1.77
CDK13-202ENST00000340829 CARMIL1Q5VZK9 1371 aa26.08■■□□□ 1.77
CDK13-202ENST00000340829 CCNB3Q8WWL7 1395 aa26.07■■□□□ 1.76
CDK13-202ENST00000340829 CFDP1Q9UEE9 299 aaPredicted RBP26.07■■□□□ 1.76
CDK13-202ENST00000340829 WIZO95785 1651 aa26.06■■□□□ 1.76
CDK13-202ENST00000340829 CCDC136Q96JN2 1154 aa26.06■■□□□ 1.76
CDK13-202ENST00000340829 VPS8Q8N3P4 1428 aa26.02■■□□□ 1.76
CDK13-202ENST00000340829 RGL3Q3MIN7 710 aa26■■□□□ 1.75
CDK13-202ENST00000340829 WDR43Q15061 677 aaKnown RBP eCLIP25.99■■□□□ 1.75
CDK13-202ENST00000340829 KANK4Q5T7N3 995 aaPredicted RBP25.97■■□□□ 1.75
CDK13-202ENST00000340829 FHAD1B1AJZ9 1412 aa25.97■■□□□ 1.75
CDK13-202ENST00000340829 PLPPR3Q6T4P5 718 aa25.96■■□□□ 1.75
CDK13-202ENST00000340829 SENP3-EIF4A1A0A087X0R7 540 aa25.93■■□□□ 1.74
CDK13-202ENST00000340829 TOP2AP11388 1531 aaKnown RBP25.93■■□□□ 1.74
CDK13-202ENST00000340829 SMARCA2P51531 1590 aa25.89■■□□□ 1.73
CDK13-202ENST00000340829 SENP3Q9H4L4 574 aaPredicted RBP25.87■■□□□ 1.73
CDK13-202ENST00000340829 EIF4G1Q04637 1599 aaKnown RBP25.85■■□□□ 1.73
CDK13-202ENST00000340829 GOLGA6L2Q8N9W4 650 aaPredicted RBP25.83■■□□□ 1.73
CDK13-202ENST00000340829 CARD11Q9BXL7 1154 aa25.83■■□□□ 1.73
CDK13-202ENST00000340829 ERCC6Q03468 1493 aa25.79■■□□□ 1.72
CDK13-202ENST00000340829 SUPT16HQ9Y5B9 1047 aaKnown RBP25.78■■□□□ 1.72
CDK13-202ENST00000340829 SETD5Q9C0A6 1442 aa25.76■■□□□ 1.71
CDK13-202ENST00000340829 UPF2Q9HAU5 1272 aaKnown RBP25.74■■□□□ 1.71
CDK13-202ENST00000340829 ARHGAP35Q9NRY4 1499 aa25.71■■□□□ 1.71
CDK13-202ENST00000340829 NBR1Q14596 966 aa25.7■■□□□ 1.7
CDK13-202ENST00000340829 TDRD9Q8NDG6 1382 aaKnown RBP25.69■■□□□ 1.7
CDK13-202ENST00000340829 RUSC2Q8N2Y8 1516 aa25.66■■□□□ 1.7
CDK13-202ENST00000340829 TIMELESSQ9UNS1 1208 aa25.66■■□□□ 1.7
CDK13-202ENST00000340829 RAPGEF2Q9Y4G8 1499 aa25.66■■□□□ 1.7
CDK13-202ENST00000340829 RAB3GAP2Q9H2M9 1393 aa25.66■■□□□ 1.7
CDK13-202ENST00000340829 HSP90AA1P07900 732 aaKnown RBP25.66■■□□□ 1.7
CDK13-202ENST00000340829 KNSTRNQ9Y448 316 aa25.64■■□□□ 1.69
CDK13-202ENST00000340829 SMARCA4P51532 1647 aa25.64■■□□□ 1.69
CDK13-202ENST00000340829 ATAD2BQ9ULI0 1458 aa25.62■■□□□ 1.69
CDK13-202ENST00000340829 FOXD1Q16676 465 aa25.6■■□□□ 1.69
CDK13-202ENST00000340829 DCAF11Q8TEB1 546 aa25.58■■□□□ 1.69
CDK13-202ENST00000340829 CDCA8Q53HL2 280 aa25.57■■□□□ 1.68
CDK13-202ENST00000340829 PPP1R15AO75807 674 aaPredicted RBP25.55■■□□□ 1.68
CDK13-202ENST00000340829 HSPA5P11021 654 aaKnown RBP25.55■■□□□ 1.68
CDK13-202ENST00000340829 CADPSQ9ULU8 1353 aa25.54■■□□□ 1.68
CDK13-202ENST00000340829 PDS5BQ9NTI5 1447 aa25.53■■□□□ 1.68
CDK13-202ENST00000340829 FMN1Q68DA7 1419 aa25.53■■□□□ 1.68
CDK13-202ENST00000340829 FHOD3Q2V2M9 1422 aa25.51■■□□□ 1.67
CDK13-202ENST00000340829 CC2D1BQ5T0F9 858 aaKnown RBP25.5■■□□□ 1.67
CDK13-202ENST00000340829 PKD2Q13563 968 aa25.47■■□□□ 1.67
CDK13-202ENST00000340829 CCER2I3L3R5 266 aa25.46■■□□□ 1.67
CDK13-202ENST00000340829 CFAP53Q96M91 514 aa25.45■■□□□ 1.66
CDK13-202ENST00000340829 NEUROD2Q15784 382 aa25.44■■□□□ 1.66
CDK13-202ENST00000340829 PPP4R2Q9NY27 417 aa25.44■■□□□ 1.66
CDK13-202ENST00000340829 MPHOSPH9Q99550 1183 aa25.44■■□□□ 1.66
CDK13-202ENST00000340829 PPM1GO15355 546 aaPredicted RBP25.39■■□□□ 1.66
CDK13-202ENST00000340829 TNNT2P45379 298 aaPredicted RBP25.39■■□□□ 1.66
CDK13-202ENST00000340829 B4GALNT3Q6L9W6 998 aa25.38■■□□□ 1.65
CDK13-202ENST00000340829 PLEKHG5O94827 1062 aa25.37■■□□□ 1.65
CDK13-202ENST00000340829 TMF1P82094 1093 aa25.37■■□□□ 1.65
CDK13-202ENST00000340829 ARXQ96QS3 562 aa25.36■■□□□ 1.65
CDK13-202ENST00000340829 CARMIL2Q6F5E8 1435 aa25.36■■□□□ 1.65
CDK13-202ENST00000340829 MYH16Q9H6N6 1097 aa25.36■■□□□ 1.65
CDK13-202ENST00000340829 ANP32BQ92688 251 aaKnown RBP25.35■■□□□ 1.65
CDK13-202ENST00000340829 C14orf37Q86TY3 774 aa25.33■■□□□ 1.64
CDK13-202ENST00000340829 ZBTB7CA1YPR0 619 aa25.32■■□□□ 1.64
CDK13-202ENST00000340829 DHX57Q6P158 1386 aaKnown RBP25.32■■□□□ 1.64
CDK13-202ENST00000340829 ARID4BQ4LE39 1312 aaPredicted RBP25.31■■□□□ 1.64
CDK13-202ENST00000340829 NUP155O75694 1391 aa25.29■■□□□ 1.64
CDK13-202ENST00000340829 POGKQ9P215 609 aa25.29■■□□□ 1.64
CDK13-202ENST00000340829 L3MBTL2Q969R5 705 aa25.27■■□□□ 1.64
CDK13-202ENST00000340829 DDRGK1Q96HY6 314 aa25.27■■□□□ 1.64
CDK13-202ENST00000340829 KANK1Q14678 1352 aa25.26■■□□□ 1.63
CDK13-202ENST00000340829 ANP32EQ9BTT0 268 aa25.25■■□□□ 1.63
CDK13-202ENST00000340829 FRAT1Q92837 279 aaPredicted RBP25.24■■□□□ 1.63
CDK13-202ENST00000340829 FTSJ3Q8IY81 847 aaKnown RBP25.24■■□□□ 1.63
CDK13-202ENST00000340829 MAPK8IP3Q9UPT6 1336 aa25.24■■□□□ 1.63
CDK13-202ENST00000340829 ANKRD30AQ9BXX3 1397 aa25.23■■□□□ 1.63
CDK13-202ENST00000340829 EIF5BO60841 1220 aaKnown RBP25.23■■□□□ 1.63
CDK13-202ENST00000340829 FANCD2Q9BXW9 1451 aa25.22■■□□□ 1.63
CDK13-202ENST00000340829 RGS3P49796 1198 aa25.22■■□□□ 1.63
CDK13-202ENST00000340829 LAS1LQ9Y4W2 734 aaKnown RBP25.22■■□□□ 1.63
CDK13-202ENST00000340829 NUDCQ9Y266 331 aa25.21■■□□□ 1.63
CDK13-202ENST00000340829 BECN1Q14457 450 aa25.2■■□□□ 1.62
CDK13-202ENST00000340829 U2SURPO15042 1029 aaKnown RBP25.18■■□□□ 1.62
CDK13-202ENST00000340829 HNRNPMP52272 730 aaKnown RBP eCLIP25.18■■□□□ 1.626e-9■■■■■ 33.2
CDK13-202ENST00000340829 ROCK2O75116 1388 aaKnown RBP25.17■■□□□ 1.62
CDK13-202ENST00000340829 GGT6Q6P531 493 aa25.17■■□□□ 1.62
CDK13-202ENST00000340829 SAFB2Q14151 953 aaKnown RBP eCLIP25.15■■□□□ 1.62
CDK13-202ENST00000340829 CCDC18Q5T9S5 1454 aa25.14■■□□□ 1.61
CDK13-202ENST00000340829 KTN1Q86UP2 1357 aaKnown RBP25.14■■□□□ 1.61
CDK13-202ENST00000340829 IGF1RP08069 1367 aa25.13■■□□□ 1.61
CDK13-202ENST00000340829 EFCAB2Q5VUJ9 269 aa25.13■■□□□ 1.61
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms