RNA–Protein interactions for RNA: ENST00000337526.10

RTN4-202, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,790 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-202ENST00000337526 TNIKQ9UKE5 1360 aa18.42■□□□□ 0.54
RTN4-202ENST00000337526 WDR43Q15061 677 aaKnown RBP eCLIP18.39■□□□□ 0.54
RTN4-202ENST00000337526 ANP32BQ92688 251 aaKnown RBP18.37■□□□□ 0.53
RTN4-202ENST00000337526 WRNQ14191 1432 aaPredicted RBP eCLIP18.37■□□□□ 0.53
RTN4-202ENST00000337526 STAG3Q9UJ98 1225 aa18.32■□□□□ 0.52
RTN4-202ENST00000337526 SUPT16HQ9Y5B9 1047 aaKnown RBP18.31■□□□□ 0.52
RTN4-202ENST00000337526 CEP164Q9UPV0 1460 aa18.28■□□□□ 0.52
RTN4-202ENST00000337526 SIN3AQ96ST3 1273 aa18.28■□□□□ 0.52
RTN4-202ENST00000337526 ESF1Q9H501 851 aaKnown RBP18.28■□□□□ 0.52
RTN4-202ENST00000337526 BAZ1BQ9UIG0 1483 aaKnown RBP18.26■□□□□ 0.51
RTN4-202ENST00000337526 CHMP7Q8WUX9 453 aaPredicted RBP18.25■□□□□ 0.51
RTN4-202ENST00000337526 SENP3-EIF4A1A0A087X0R7 540 aa18.24■□□□□ 0.51
RTN4-202ENST00000337526 NPM1P06748 294 aaKnown RBP eCLIP18.24■□□□□ 0.51
RTN4-202ENST00000337526 ANP32EQ9BTT0 268 aa18.24■□□□□ 0.51
RTN4-202ENST00000337526 ARXQ96QS3 562 aa18.22■□□□□ 0.51
RTN4-202ENST00000337526 KIF27Q86VH2 1401 aa18.22■□□□□ 0.51
RTN4-202ENST00000337526 RGL3Q3MIN7 710 aa18.21■□□□□ 0.5
RTN4-202ENST00000337526 PLEKHD1A6NEE1 506 aa18.17■□□□□ 0.5
RTN4-202ENST00000337526 ERCC6Q03468 1493 aa18.16■□□□□ 0.5
RTN4-202ENST00000337526 BAZ1AQ9NRL2 1556 aaPredicted RBP18.15■□□□□ 0.5
RTN4-202ENST00000337526 PPP4R2Q9NY27 417 aa18.14■□□□□ 0.49
RTN4-202ENST00000337526 CFDP1Q9UEE9 299 aaPredicted RBP18.14■□□□□ 0.49
RTN4-202ENST00000337526 DDRGK1Q96HY6 314 aa18.13■□□□□ 0.49
RTN4-202ENST00000337526 CCNB3Q8WWL7 1395 aa18.13■□□□□ 0.49
RTN4-202ENST00000337526 CARD11Q9BXL7 1154 aa18.13■□□□□ 0.49
RTN4-202ENST00000337526 SOGA1O94964 1423 aa18.11■□□□□ 0.49
RTN4-202ENST00000337526 CECR2Q9BXF3 1484 aa18.11■□□□□ 0.49
RTN4-202ENST00000337526 KCNH8Q96L42 1107 aa18.09■□□□□ 0.49
RTN4-202ENST00000337526 BECN1Q14457 450 aa18.09■□□□□ 0.49
RTN4-202ENST00000337526 TIMELESSQ9UNS1 1208 aa18.08■□□□□ 0.48
RTN4-202ENST00000337526 KNSTRNQ9Y448 316 aa18.08■□□□□ 0.48
RTN4-202ENST00000337526 GLIPR1L2Q4G1C9 344 aa18.07■□□□□ 0.48
RTN4-202ENST00000337526 MYH16Q9H6N6 1097 aa18.06■□□□□ 0.48
RTN4-202ENST00000337526 PLPPR3Q6T4P5 718 aa18.05■□□□□ 0.48
RTN4-202ENST00000337526 CDCA8Q53HL2 280 aa18.04■□□□□ 0.48
RTN4-202ENST00000337526 B4GALNT3Q6L9W6 998 aa18.04■□□□□ 0.48
RTN4-202ENST00000337526 PPM1GO15355 546 aaPredicted RBP18■□□□□ 0.47
RTN4-202ENST00000337526 CCER2I3L3R5 266 aa18■□□□□ 0.47
RTN4-202ENST00000337526 SENP3Q9H4L4 574 aaPredicted RBP18■□□□□ 0.47
RTN4-202ENST00000337526 CFAP53Q96M91 514 aa17.99■□□□□ 0.47
RTN4-202ENST00000337526 VPS8Q8N3P4 1428 aa17.99■□□□□ 0.47
RTN4-202ENST00000337526 FHAD1B1AJZ9 1412 aa17.98■□□□□ 0.47
RTN4-202ENST00000337526 NEUROD2Q15784 382 aa17.97■□□□□ 0.47
RTN4-202ENST00000337526 KANK4Q5T7N3 995 aaPredicted RBP17.97■□□□□ 0.47
RTN4-202ENST00000337526 NOP58Q9Y2X3 529 aaKnown RBP17.96■□□□□ 0.47
RTN4-202ENST00000337526 RGS3P49796 1198 aa17.95■□□□□ 0.46
RTN4-202ENST00000337526 LAS1LQ9Y4W2 734 aaKnown RBP17.95■□□□□ 0.46
RTN4-202ENST00000337526 CARMIL1Q5VZK9 1371 aa17.94■□□□□ 0.46
RTN4-202ENST00000337526 SMARCA2P51531 1590 aa17.94■□□□□ 0.46
RTN4-202ENST00000337526 SETD5Q9C0A6 1442 aa17.93■□□□□ 0.46
RTN4-202ENST00000337526 RBM19Q9Y4C8 960 aaKnown RBP17.93■□□□□ 0.46
RTN4-202ENST00000337526 TRIM44Q96DX7 344 aaPredicted RBP17.92■□□□□ 0.46
RTN4-202ENST00000337526 GOLGA6L22H0YM25 854 aa17.91■□□□□ 0.46
RTN4-202ENST00000337526 CC2D1BQ5T0F9 858 aaKnown RBP17.91■□□□□ 0.46
RTN4-202ENST00000337526 FTSJ3Q8IY81 847 aaKnown RBP17.91■□□□□ 0.46
RTN4-202ENST00000337526 HSPA5P11021 654 aaKnown RBP17.89■□□□□ 0.45
RTN4-202ENST00000337526 DCAF11Q8TEB1 546 aa17.89■□□□□ 0.45
RTN4-202ENST00000337526 FRAT1Q92837 279 aaPredicted RBP17.88■□□□□ 0.45
RTN4-202ENST00000337526 PPP1R15AO75807 674 aaPredicted RBP17.87■□□□□ 0.45
RTN4-202ENST00000337526 CCDC88BA6NC98 1476 aa17.87■□□□□ 0.45
RTN4-202ENST00000337526 CUX2O14529 1486 aa17.87■□□□□ 0.45
RTN4-202ENST00000337526 PDS5BQ9NTI5 1447 aa17.86■□□□□ 0.45
RTN4-202ENST00000337526 MROH2BQ7Z745 1585 aa17.85■□□□□ 0.45
RTN4-202ENST00000337526 NCLP19338 710 aaKnown RBP17.84■□□□□ 0.45
RTN4-202ENST00000337526 ERICH6BQ5W0A0 696 aa17.84■□□□□ 0.45
RTN4-202ENST00000337526 ABCC8Q09428 1581 aa17.84■□□□□ 0.45
RTN4-202ENST00000337526 RAB3GAP2Q9H2M9 1393 aa17.83■□□□□ 0.45
RTN4-202ENST00000337526 TNNT2P45379 298 aaPredicted RBP17.83■□□□□ 0.44
RTN4-202ENST00000337526 NUDCQ9Y266 331 aa17.83■□□□□ 0.44
RTN4-202ENST00000337526 MAPK8IP3Q9UPT6 1336 aa17.82■□□□□ 0.44
RTN4-202ENST00000337526 TMF1P82094 1093 aa17.82■□□□□ 0.44
RTN4-202ENST00000337526 RTN4Q9NQC3 1192 aaKnown RBP17.8■□□□□ 0.44
RTN4-202ENST00000337526 FOXD1Q16676 465 aa17.79■□□□□ 0.44
RTN4-202ENST00000337526 C14orf37Q86TY3 774 aa17.78■□□□□ 0.44
RTN4-202ENST00000337526 ARHGAP35Q9NRY4 1499 aa17.77■□□□□ 0.44
RTN4-202ENST00000337526 PLEKHG5O94827 1062 aa17.76■□□□□ 0.43
RTN4-202ENST00000337526 TSHZ2Q9NRE2 1034 aa17.76■□□□□ 0.43
RTN4-202ENST00000337526 PKD2Q13563 968 aa17.75■□□□□ 0.43
RTN4-202ENST00000337526 ATAD2BQ9ULI0 1458 aa17.75■□□□□ 0.43
RTN4-202ENST00000337526 ZBTB7CA1YPR0 619 aa17.75■□□□□ 0.43
RTN4-202ENST00000337526 U2SURPO15042 1029 aaKnown RBP17.74■□□□□ 0.43
RTN4-202ENST00000337526 CASC1Q6TDU7 716 aa17.74■□□□□ 0.43
RTN4-202ENST00000337526 MS4A1P11836 297 aa17.74■□□□□ 0.43
RTN4-202ENST00000337526 DEKP35659 375 aaKnown RBP17.73■□□□□ 0.43
RTN4-202ENST00000337526 POGKQ9P215 609 aa17.73■□□□□ 0.43
RTN4-202ENST00000337526 MPHOSPH9Q99550 1183 aa17.73■□□□□ 0.43
RTN4-202ENST00000337526 PTMAP06454 111 aaKnown RBP17.71■□□□□ 0.43
RTN4-202ENST00000337526 CADPSQ9ULU8 1353 aa17.7■□□□□ 0.42
RTN4-202ENST00000337526 CHMP4BQ9H444 224 aaKnown RBP17.7■□□□□ 0.42
RTN4-202ENST00000337526 RCAN3Q9UKA8 241 aa17.68■□□□□ 0.42
RTN4-202ENST00000337526 EIF4G1Q04637 1599 aaKnown RBP17.67■□□□□ 0.42
RTN4-202ENST00000337526 KTN1Q86UP2 1357 aaKnown RBP17.66■□□□□ 0.42
RTN4-202ENST00000337526 HSP90AB1P08238 724 aaKnown RBP17.66■□□□□ 0.42
RTN4-202ENST00000337526 L3MBTL2Q969R5 705 aa17.66■□□□□ 0.42
RTN4-202ENST00000337526 TPRNQ4KMQ1 711 aa17.65■□□□□ 0.42
RTN4-202ENST00000337526 NAP1L5Q96NT1 182 aaPredicted RBP17.64■□□□□ 0.42
RTN4-202ENST00000337526 DNTTIP2Q5QJE6 756 aaKnown RBP17.64■□□□□ 0.41
RTN4-202ENST00000337526 MORC1Q86VD1 984 aa17.64■□□□□ 0.41
RTN4-202ENST00000337526 RALBP1Q15311 655 aa17.63■□□□□ 0.41
RTN4-202ENST00000337526 PNNQ9H307 717 aaKnown RBP17.63■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms