RNA–Protein interactions for RNA: ENST00000330588.4

SMG1-201, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 5 BASIC

Gene SMG1, Length 1,588 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-201ENST00000330588 STAG3Q9UJ98 1225 aa12.05□□□□□ -0.48
SMG1-201ENST00000330588 BAZ1BQ9UIG0 1483 aaKnown RBP12.03□□□□□ -0.48
SMG1-201ENST00000330588 MROH2BQ7Z745 1585 aa12.03□□□□□ -0.48
SMG1-201ENST00000330588 GABBR2O75899 941 aa12.02□□□□□ -0.49
SMG1-201ENST00000330588 CREBZFQ9NS37 354 aa12□□□□□ -0.49
SMG1-201ENST00000330588 CD44P16070 742 aaKnown RBP11.96□□□□□ -0.49
SMG1-201ENST00000330588 PROM2Q8N271 834 aa11.92□□□□□ -0.5
SMG1-201ENST00000330588 LAMC3Q9Y6N6 1575 aa11.91□□□□□ -0.5
SMG1-201ENST00000330588 CUX2O14529 1486 aa11.89□□□□□ -0.51
SMG1-201ENST00000330588 WIZO95785 1651 aa11.88□□□□□ -0.51
SMG1-201ENST00000330588 CLCN6P51797 869 aa11.87□□□□□ -0.51
SMG1-201ENST00000330588 RSF1Q96T23 1441 aaPredicted RBP11.86□□□□□ -0.51
SMG1-201ENST00000330588 ERCC6Q03468 1493 aa11.85□□□□□ -0.51
SMG1-201ENST00000330588 ZNF579Q8NAF0 562 aaKnown RBP11.84□□□□□ -0.51
SMG1-201ENST00000330588 MNX1P50219 401 aaPredicted RBP11.83□□□□□ -0.52
SMG1-201ENST00000330588 NESP48681 1621 aa11.82□□□□□ -0.52
SMG1-201ENST00000330588 TOP2AP11388 1531 aaKnown RBP11.82□□□□□ -0.52
SMG1-201ENST00000330588 CADPSQ9ULU8 1353 aa11.8□□□□□ -0.52
SMG1-201ENST00000330588 PDS5BQ9NTI5 1447 aa11.8□□□□□ -0.52
SMG1-201ENST00000330588 POTEIP0CG38 1075 aa11.79□□□□□ -0.52
SMG1-201ENST00000330588 ZRANB1Q9UGI0 708 aa11.79□□□□□ -0.52
SMG1-201ENST00000330588 THOC2Q8NI27 1593 aaKnown RBP11.78□□□□□ -0.52
SMG1-201ENST00000330588 NPM1P06748 294 aaKnown RBP eCLIP11.74□□□□□ -0.53
SMG1-201ENST00000330588 KIF21AQ7Z4S6 1674 aa11.73□□□□□ -0.53
SMG1-201ENST00000330588 CFTRP13569 1480 aa11.73□□□□□ -0.53
SMG1-201ENST00000330588 LHX8Q68G74 356 aa11.7□□□□□ -0.54
SMG1-201ENST00000330588 MRC2Q9UBG0 1479 aa11.69□□□□□ -0.54
SMG1-201ENST00000330588 PRDM2Q13029 1718 aa11.68□□□□□ -0.54
SMG1-201ENST00000330588 PAK3O75914 559 aaPredicted RBP11.67□□□□□ -0.54
SMG1-201ENST00000330588 WDR62O43379 1518 aa11.67□□□□□ -0.54
SMG1-201ENST00000330588 CEP164Q9UPV0 1460 aa11.67□□□□□ -0.54
SMG1-201ENST00000330588 GALR2O43603 387 aaPredicted RBP11.66□□□□□ -0.54
SMG1-201ENST00000330588 DCBLD2Q96PD2 775 aa11.65□□□□□ -0.54
SMG1-201ENST00000330588 FANCD2Q9BXW9 1451 aa11.64□□□□□ -0.55
SMG1-201ENST00000330588 PHF12Q96QT6 1004 aa11.64□□□□□ -0.55
SMG1-201ENST00000330588 CCDC88BA6NC98 1476 aa11.62□□□□□ -0.55
SMG1-201ENST00000330588 DNAJC5Q9H3Z4 198 aa11.58□□□□□ -0.56
SMG1-201ENST00000330588 PLSCR2Q9NRY7 297 aa11.54□□□□□ -0.56
SMG1-201ENST00000330588 ABCC8Q09428 1581 aa11.53□□□□□ -0.56
SMG1-201ENST00000330588 URB2Q14146 1524 aaKnown RBP11.53□□□□□ -0.56
SMG1-201ENST00000330588 MIER1Q8N108 512 aa11.52□□□□□ -0.57
SMG1-201ENST00000330588 CCDC61Q9Y6R9 512 aa11.51□□□□□ -0.57
SMG1-201ENST00000330588 MS4A3Q96HJ5 214 aa11.5□□□□□ -0.57
SMG1-201ENST00000330588 PLEKHG5O94827 1062 aa11.49□□□□□ -0.57
SMG1-201ENST00000330588 FKBP8Q14318 412 aa11.49□□□□□ -0.57
SMG1-201ENST00000330588 TSPYL2Q9H2G4 693 aaPredicted RBP11.49□□□□□ -0.57
SMG1-201ENST00000330588 DNMBPQ6XZF7 1577 aa11.46□□□□□ -0.57
SMG1-201ENST00000330588 ASTLQ6HA08 431 aaPredicted RBP11.45□□□□□ -0.58
SMG1-201ENST00000330588 PELP1Q8IZL8 1130 aaKnown RBP11.45□□□□□ -0.58
SMG1-201ENST00000330588 TOPBP1Q92547 1522 aa11.45□□□□□ -0.58
SMG1-201ENST00000330588 RASEFQ8IZ41 740 aa11.45□□□□□ -0.58
SMG1-201ENST00000330588 IFT140Q96RY7 1462 aa11.44□□□□□ -0.58
SMG1-201ENST00000330588 KIF12Q96FN5 646 aa11.44□□□□□ -0.58
SMG1-201ENST00000330588 ATMINO43313 823 aaPredicted RBP11.41□□□□□ -0.58
SMG1-201ENST00000330588 PLCD3Q8N3E9 789 aa11.41□□□□□ -0.58
SMG1-201ENST00000330588 POTEB2H3BUK9 544 aa11.4□□□□□ -0.58
SMG1-201ENST00000330588 WDR97A6NE52 1622 aa11.38□□□□□ -0.59
SMG1-201ENST00000330588 NUBP1P53384 320 aa11.37□□□□□ -0.59
SMG1-201ENST00000330588 ZBTB47Q9UFB7 747 aaPredicted RBP11.37□□□□□ -0.59
SMG1-201ENST00000330588 TARBP1Q13395 1621 aaKnown RBP11.36□□□□□ -0.59
SMG1-201ENST00000330588 OTUD5Q96G74 571 aa11.35□□□□□ -0.59
SMG1-201ENST00000330588 MAP3K13O43283 966 aa11.34□□□□□ -0.59
SMG1-201ENST00000330588 SLC39A7Q92504 469 aa11.34□□□□□ -0.59
SMG1-201ENST00000330588 POLA1P09884 1462 aaPredicted RBP11.34□□□□□ -0.59
SMG1-201ENST00000330588 C7P10643 843 aa11.33□□□□□ -0.6
SMG1-201ENST00000330588 METRNQ9UJH8 293 aa11.33□□□□□ -0.6
SMG1-201ENST00000330588 EIF4G3O43432 1585 aaKnown RBP11.32□□□□□ -0.6
SMG1-201ENST00000330588 ATN1P54259 1190 aaPredicted RBP11.32□□□□□ -0.6
SMG1-201ENST00000330588 TRPC6Q9Y210 931 aa11.32□□□□□ -0.6
SMG1-201ENST00000330588 CUX1P39880 1505 aa11.31□□□□□ -0.6
SMG1-201ENST00000330588 ZNF608Q9ULD9 1512 aaPredicted RBP11.31□□□□□ -0.6
SMG1-201ENST00000330588 BMP2KQ9NSY1 1161 aaPredicted RBP11.3□□□□□ -0.6
SMG1-201ENST00000330588 SUPT5HO00267 1087 aaKnown RBP11.29□□□□□ -0.6
SMG1-201ENST00000330588 TIE1P35590 1138 aa11.29□□□□□ -0.6
SMG1-201ENST00000330588 SGIP1Q9BQI5 828 aa11.29□□□□□ -0.6
SMG1-201ENST00000330588 FGD5Q6ZNL6 1462 aa11.28□□□□□ -0.6
SMG1-201ENST00000330588 FBXO3Q9UK99 471 aa11.28□□□□□ -0.6
SMG1-201ENST00000330588 SOGA1O94964 1423 aa11.27□□□□□ -0.61
SMG1-201ENST00000330588 POTEJP0CG39 1038 aa11.25□□□□□ -0.61
SMG1-201ENST00000330588 BIVM-ERCC5R4GMW8 1640 aa11.24□□□□□ -0.61
SMG1-201ENST00000330588 FAM212AQ96EL1 285 aa11.23□□□□□ -0.61
SMG1-201ENST00000330588 AQRO60306 1485 aaKnown RBP eCLIP11.22□□□□□ -0.61
SMG1-201ENST00000330588 RAD54L2Q9Y4B4 1467 aa11.22□□□□□ -0.61
SMG1-201ENST00000330588 TOP2BQ02880 1626 aa11.22□□□□□ -0.61
SMG1-201ENST00000330588 ABCA10Q8WWZ4 1543 aa11.22□□□□□ -0.61
SMG1-201ENST00000330588 MAGI1Q96QZ7 1491 aaPredicted RBP11.22□□□□□ -0.61
SMG1-201ENST00000330588 POTEFA5A3E0 1075 aa11.21□□□□□ -0.61
SMG1-201ENST00000330588 TTLL13PA6NNM8 815 aa11.21□□□□□ -0.61
SMG1-201ENST00000330588 PCDHB13Q9Y5F0 798 aa11.21□□□□□ -0.61
SMG1-201ENST00000330588 GRIN2BQ13224 1484 aa11.2□□□□□ -0.62
SMG1-201ENST00000330588 WRNQ14191 1432 aaPredicted RBP eCLIP11.19□□□□□ -0.62
SMG1-201ENST00000330588 CHD1O14646 1710 aa11.19□□□□□ -0.62
SMG1-201ENST00000330588 ABCA5Q8WWZ7 1642 aa11.19□□□□□ -0.62
SMG1-201ENST00000330588 IFNL1Q8IU54 200 aa11.18□□□□□ -0.62
SMG1-201ENST00000330588 TDRD9Q8NDG6 1382 aaKnown RBP11.17□□□□□ -0.62
SMG1-201ENST00000330588 PBRM1Q86U86 1689 aa11.17□□□□□ -0.62
SMG1-201ENST00000330588 GAPVD1Q14C86 1478 aa11.16□□□□□ -0.62
SMG1-201ENST00000330588 MAMSTRQ6ZN01 415 aa11.16□□□□□ -0.62
SMG1-201ENST00000330588 SNAPC4Q5SXM2 1469 aa11.15□□□□□ -0.62
SMG1-201ENST00000330588 SYNJ2O15056 1496 aa11.15□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 8 ms