RNA–Protein interactions for RNA: ENST00000330494.11

CHD3-201, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CHD3, Length 7,328 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-201ENST00000330494 BAZ1BQ9UIG0 1483 aaKnown RBP13.74□□□□□ -0.21
CHD3-201ENST00000330494 GLIPR1L2Q4G1C9 344 aa13.73□□□□□ -0.21
CHD3-201ENST00000330494 MIER1Q8N108 512 aa13.72□□□□□ -0.21
CHD3-201ENST00000330494 MRS2Q9HD23 443 aa13.72□□□□□ -0.21
CHD3-201ENST00000330494 WDR43Q15061 677 aaKnown RBP eCLIP13.72□□□□□ -0.216e-7■■□□□ 12.2
CHD3-201ENST00000330494 C14orf37Q86TY3 774 aa13.72□□□□□ -0.21
CHD3-201ENST00000330494 CEP162Q5TB80 1403 aa13.7□□□□□ -0.22
CHD3-201ENST00000330494 HSP90AA1P07900 732 aaKnown RBP13.68□□□□□ -0.22
CHD3-201ENST00000330494 GOLGA3Q08378 1498 aa13.67□□□□□ -0.22
CHD3-201ENST00000330494 ARID4BQ4LE39 1312 aaPredicted RBP13.67□□□□□ -0.22
CHD3-201ENST00000330494 PLEKHD1A6NEE1 506 aa13.67□□□□□ -0.22
CHD3-201ENST00000330494 WRNQ14191 1432 aaPredicted RBP eCLIP13.66□□□□□ -0.22
CHD3-201ENST00000330494 ERCC6Q03468 1493 aa13.66□□□□□ -0.22
CHD3-201ENST00000330494 PPP1R15AO75807 674 aaPredicted RBP13.66□□□□□ -0.22
CHD3-201ENST00000330494 CCDC136Q96JN2 1154 aa13.65□□□□□ -0.22
CHD3-201ENST00000330494 NACADO15069 1562 aa13.65□□□□□ -0.22
CHD3-201ENST00000330494 ARXQ96QS3 562 aa13.63□□□□□ -0.23
CHD3-201ENST00000330494 EIF4G2P78344 907 aaKnown RBP eCLIP13.62□□□□□ -0.23
CHD3-201ENST00000330494 NBR1Q14596 966 aa13.61□□□□□ -0.23
CHD3-201ENST00000330494 CFDP1Q9UEE9 299 aaPredicted RBP13.61□□□□□ -0.23
CHD3-201ENST00000330494 PPM1GO15355 546 aaPredicted RBP13.6□□□□□ -0.23
CHD3-201ENST00000330494 EIF4G1Q04637 1599 aaKnown RBP13.6□□□□□ -0.23
CHD3-201ENST00000330494 CECR2Q9BXF3 1484 aa13.59□□□□□ -0.23
CHD3-201ENST00000330494 SIN3AQ96ST3 1273 aa13.58□□□□□ -0.24
CHD3-201ENST00000330494 UPF2Q9HAU5 1272 aaKnown RBP13.58□□□□□ -0.24
CHD3-201ENST00000330494 KIF27Q86VH2 1401 aa13.58□□□□□ -0.24
CHD3-201ENST00000330494 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.55□□□□□ -0.24
CHD3-201ENST00000330494 TNNT2P45379 298 aaPredicted RBP13.54□□□□□ -0.24
CHD3-201ENST00000330494 NEUROD2Q15784 382 aa13.51□□□□□ -0.25
CHD3-201ENST00000330494 CARD11Q9BXL7 1154 aa13.51□□□□□ -0.25
CHD3-201ENST00000330494 ABCC8Q09428 1581 aa13.5□□□□□ -0.25
CHD3-201ENST00000330494 CEP164Q9UPV0 1460 aa13.5□□□□□ -0.25
CHD3-201ENST00000330494 MLECQ14165 292 aa13.5□□□□□ -0.25
CHD3-201ENST00000330494 HAP1P54257 671 aaPredicted RBP13.5□□□□□ -0.25
CHD3-201ENST00000330494 LAS1LQ9Y4W2 734 aaKnown RBP13.5□□□□□ -0.25
CHD3-201ENST00000330494 SOGA1O94964 1423 aa13.49□□□□□ -0.25
CHD3-201ENST00000330494 LMOD2Q6P5Q4 547 aa13.49□□□□□ -0.25
CHD3-201ENST00000330494 EEA1Q15075 1411 aa13.49□□□□□ -0.25
CHD3-201ENST00000330494 BAZ1AQ9NRL2 1556 aaPredicted RBP13.48□□□□□ -0.25
CHD3-201ENST00000330494 CC2D1BQ5T0F9 858 aaKnown RBP13.47□□□□□ -0.25
CHD3-201ENST00000330494 TNIKQ9UKE5 1360 aa13.46□□□□□ -0.25
CHD3-201ENST00000330494 CUX2O14529 1486 aa13.46□□□□□ -0.25
CHD3-201ENST00000330494 TRHP20396 242 aaPredicted RBP13.45□□□□□ -0.26
CHD3-201ENST00000330494 MYH16Q9H6N6 1097 aa13.45□□□□□ -0.26
CHD3-201ENST00000330494 KNSTRNQ9Y448 316 aa13.45□□□□□ -0.26
CHD3-201ENST00000330494 ANP32BQ92688 251 aaKnown RBP13.45□□□□□ -0.26
CHD3-201ENST00000330494 SUPT16HQ9Y5B9 1047 aaKnown RBP13.43□□□□□ -0.26
CHD3-201ENST00000330494 POGKQ9P215 609 aa13.43□□□□□ -0.26
CHD3-201ENST00000330494 FOXD1Q16676 465 aa13.43□□□□□ -0.26
CHD3-201ENST00000330494 SOX12O15370 315 aa13.42□□□□□ -0.26
CHD3-201ENST00000330494 SAFB2Q14151 953 aaKnown RBP eCLIP13.42□□□□□ -0.26
CHD3-201ENST00000330494 TPRNQ4KMQ1 711 aa13.41□□□□□ -0.26
CHD3-201ENST00000330494 CARMIL1Q5VZK9 1371 aa13.41□□□□□ -0.26
CHD3-201ENST00000330494 MROH2BQ7Z745 1585 aa13.4□□□□□ -0.26
CHD3-201ENST00000330494 CCNB3Q8WWL7 1395 aa13.4□□□□□ -0.26
CHD3-201ENST00000330494 DCAF11Q8TEB1 546 aa13.4□□□□□ -0.26
CHD3-201ENST00000330494 WIZO95785 1651 aa13.38□□□□□ -0.27
CHD3-201ENST00000330494 CFAP53Q96M91 514 aa13.38□□□□□ -0.27
CHD3-201ENST00000330494 CCDC88BA6NC98 1476 aa13.38□□□□□ -0.27
CHD3-201ENST00000330494 U2SURPO15042 1029 aaKnown RBP13.36□□□□□ -0.27
CHD3-201ENST00000330494 TAOK2Q9UL54 1235 aa13.35□□□□□ -0.27
CHD3-201ENST00000330494 FRAT1Q92837 279 aaPredicted RBP13.35□□□□□ -0.27
CHD3-201ENST00000330494 FTSJ3Q8IY81 847 aaKnown RBP13.35□□□□□ -0.27
CHD3-201ENST00000330494 KANK4Q5T7N3 995 aaPredicted RBP13.34□□□□□ -0.27
CHD3-201ENST00000330494 STK26Q9P289 416 aa13.34□□□□□ -0.27
CHD3-201ENST00000330494 GGT6Q6P531 493 aa13.33□□□□□ -0.27
CHD3-201ENST00000330494 CDCA8Q53HL2 280 aa13.32□□□□□ -0.28
CHD3-201ENST00000330494 MAPK8IP3Q9UPT6 1336 aa13.32□□□□□ -0.28
CHD3-201ENST00000330494 TDRD9Q8NDG6 1382 aaKnown RBP13.31□□□□□ -0.28
CHD3-201ENST00000330494 ANP32EQ9BTT0 268 aa13.31□□□□□ -0.28
CHD3-201ENST00000330494 FHAD1B1AJZ9 1412 aa13.3□□□□□ -0.28
CHD3-201ENST00000330494 SRPK2P78362 688 aaKnown RBP13.29□□□□□ -0.28
CHD3-201ENST00000330494 TULP1O00294 542 aaPredicted RBP13.29□□□□□ -0.28
CHD3-201ENST00000330494 RGS3P49796 1198 aa13.29□□□□□ -0.28
CHD3-201ENST00000330494 RTN4Q9NQC3 1192 aaKnown RBP13.28□□□□□ -0.28
CHD3-201ENST00000330494 ARHGAP35Q9NRY4 1499 aa13.26□□□□□ -0.29
CHD3-201ENST00000330494 NCLP19338 710 aaKnown RBP13.25□□□□□ -0.29
CHD3-201ENST00000330494 PKD2Q13563 968 aa13.25□□□□□ -0.29
CHD3-201ENST00000330494 KANK1Q14678 1352 aa13.25□□□□□ -0.29
CHD3-201ENST00000330494 NUDCQ9Y266 331 aa13.25□□□□□ -0.29
CHD3-201ENST00000330494 NUTM2DQ5VT03 806 aaPredicted RBP13.25□□□□□ -0.29
CHD3-201ENST00000330494 TMF1P82094 1093 aa13.24□□□□□ -0.29
CHD3-201ENST00000330494 B4GALNT3Q6L9W6 998 aa13.24□□□□□ -0.29
CHD3-201ENST00000330494 NPHP1O15259 732 aa13.24□□□□□ -0.29
CHD3-201ENST00000330494 HSPA5P11021 654 aaKnown RBP13.23□□□□□ -0.29
CHD3-201ENST00000330494 SETD5Q9C0A6 1442 aa13.21□□□□□ -0.29
CHD3-201ENST00000330494 BECN1Q14457 450 aa13.21□□□□□ -0.29
CHD3-201ENST00000330494 HNRNPMP52272 730 aaKnown RBP eCLIP13.21□□□□□ -0.3
CHD3-201ENST00000330494 SMARCA2P51531 1590 aa13.2□□□□□ -0.3
CHD3-201ENST00000330494 PAK3O75914 559 aaPredicted RBP13.2□□□□□ -0.3
CHD3-201ENST00000330494 OS9Q13438 667 aaPredicted RBP13.19□□□□□ -0.3
CHD3-201ENST00000330494 MORC1Q86VD1 984 aa13.19□□□□□ -0.3
CHD3-201ENST00000330494 DDRGK1Q96HY6 314 aa13.18□□□□□ -0.3
CHD3-201ENST00000330494 VPS8Q8N3P4 1428 aa13.18□□□□□ -0.3
CHD3-201ENST00000330494 CASC1Q6TDU7 716 aa13.17□□□□□ -0.3
CHD3-201ENST00000330494 PDS5BQ9NTI5 1447 aa13.17□□□□□ -0.3
CHD3-201ENST00000330494 FHOD3Q2V2M9 1422 aa13.16□□□□□ -0.3
CHD3-201ENST00000330494 RAB3GAP2Q9H2M9 1393 aa13.16□□□□□ -0.3
CHD3-201ENST00000330494 MPHOSPH9Q99550 1183 aa13.16□□□□□ -0.3
CHD3-201ENST00000330494 CARMIL2Q6F5E8 1435 aa13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 59.7 ms