RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 SLC24A1O60721 1099 aa8.58□□□□□ -1.04
HMGB1-201ENST00000326004 CHRM1P11229 460 aaPredicted RBP8.57□□□□□ -1.04
HMGB1-201ENST00000326004 TAOK2Q9UL54 1235 aa8.54□□□□□ -1.04
HMGB1-201ENST00000326004 RIOK3O14730 519 aaKnown RBP8.51□□□□□ -1.05
HMGB1-201ENST00000326004 PAK3O75914 559 aaPredicted RBP8.51□□□□□ -1.05
HMGB1-201ENST00000326004 RNF25Q96BH1 459 aaPredicted RBP8.51□□□□□ -1.05
HMGB1-201ENST00000326004 TSPYL2Q9H2G4 693 aaPredicted RBP8.51□□□□□ -1.05
HMGB1-201ENST00000326004 BBXQ8WY36 941 aaPredicted RBP8.5□□□□□ -1.05
HMGB1-201ENST00000326004 PYGBP11216 843 aa8.49□□□□□ -1.05
HMGB1-201ENST00000326004 PLCB2Q00722 1185 aa8.48□□□□□ -1.05
HMGB1-201ENST00000326004 POTEHQ6S545 545 aa8.48□□□□□ -1.05
HMGB1-201ENST00000326004 ZBTB4Q9P1Z0 1013 aaPredicted RBP8.48□□□□□ -1.05
HMGB1-201ENST00000326004 VGFO15240 615 aaPredicted RBP8.46□□□□□ -1.06
HMGB1-201ENST00000326004 CHGAP10645 457 aaKnown RBP8.46□□□□□ -1.06
HMGB1-201ENST00000326004 HS6ST3Q8IZP7 471 aa8.46□□□□□ -1.06
HMGB1-201ENST00000326004 CCDC61Q9Y6R9 512 aa8.46□□□□□ -1.06
HMGB1-201ENST00000326004 ZNF467Q7Z7K2 595 aaPredicted RBP8.44□□□□□ -1.06
HMGB1-201ENST00000326004 SGIP1Q9BQI5 828 aa8.44□□□□□ -1.06
HMGB1-201ENST00000326004 DNAJC5Q9H3Z4 198 aa8.42□□□□□ -1.06
HMGB1-201ENST00000326004 CD44P16070 742 aaKnown RBP8.41□□□□□ -1.06
HMGB1-201ENST00000326004 ZRANB1Q9UGI0 708 aa8.4□□□□□ -1.06
HMGB1-201ENST00000326004 STK25O00506 426 aa8.39□□□□□ -1.07
HMGB1-201ENST00000326004 ZNF579Q8NAF0 562 aaKnown RBP8.39□□□□□ -1.07
HMGB1-201ENST00000326004 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP8.38□□□□□ -1.07
HMGB1-201ENST00000326004 ZFP91Q96JP5 570 aaPredicted RBP8.38□□□□□ -1.07
HMGB1-201ENST00000326004 C19orf67A6NJJ6 358 aa8.37□□□□□ -1.07
HMGB1-201ENST00000326004 PAXIP1Q6ZW49 1069 aaPredicted RBP8.37□□□□□ -1.07
HMGB1-201ENST00000326004 PDAP1Q13442 181 aaKnown RBP8.36□□□□□ -1.07
HMGB1-201ENST00000326004 SPRYD3Q8NCJ5 442 aa8.36□□□□□ -1.07
HMGB1-201ENST00000326004 KIF12Q96FN5 646 aa8.36□□□□□ -1.07
HMGB1-201ENST00000326004 PCDHB13Q9Y5F0 798 aa8.36□□□□□ -1.07
HMGB1-201ENST00000326004 BCL11BQ9C0K0 894 aaPredicted RBP8.35□□□□□ -1.07
HMGB1-201ENST00000326004 MAP3K13O43283 966 aa8.34□□□□□ -1.07
HMGB1-201ENST00000326004 HAP1P54257 671 aaPredicted RBP8.34□□□□□ -1.07
HMGB1-201ENST00000326004 CFAP44Q96MT7 982 aa8.34□□□□□ -1.07
HMGB1-201ENST00000326004 PCDHB8Q9UN66 801 aa8.34□□□□□ -1.07
HMGB1-201ENST00000326004 STK24Q9Y6E0 443 aa8.34□□□□□ -1.07
HMGB1-201ENST00000326004 IFNL1Q8IU54 200 aa8.32□□□□□ -1.08
HMGB1-201ENST00000326004 PSEN1P49768 467 aa8.31□□□□□ -1.08
HMGB1-201ENST00000326004 PHF12Q96QT6 1004 aa8.31□□□□□ -1.08
HMGB1-201ENST00000326004 RYDENQ9NUL5 291 aaKnown RBP8.3□□□□□ -1.08
HMGB1-201ENST00000326004 NKX1-1Q15270 411 aaPredicted RBP8.29□□□□□ -1.08
HMGB1-201ENST00000326004 HAX1O00165 279 aa8.27□□□□□ -1.09
HMGB1-201ENST00000326004 CLCN6P51797 869 aa8.26□□□□□ -1.09
HMGB1-201ENST00000326004 VSIG10Q8N0Z9 540 aa8.26□□□□□ -1.09
HMGB1-201ENST00000326004 GTPBP6O43824 516 aaPredicted RBP8.25□□□□□ -1.09
HMGB1-201ENST00000326004 MS4A3Q96HJ5 214 aa8.23□□□□□ -1.09
HMGB1-201ENST00000326004 CABP2Q9NPB3 220 aa8.2□□□□□ -1.1
HMGB1-201ENST00000326004 SOX12O15370 315 aa8.19□□□□□ -1.1
HMGB1-201ENST00000326004 TIE1P35590 1138 aa8.19□□□□□ -1.1
HMGB1-201ENST00000326004 TMEM106CQ9BVX2 250 aa8.19□□□□□ -1.1
HMGB1-201ENST00000326004 TSHZ2Q9NRE2 1034 aa8.19□□□□□ -1.1
HMGB1-201ENST00000326004 EVX2Q03828 476 aa8.17□□□□□ -1.1
HMGB1-201ENST00000326004 EFCAB3Q8N7B9 438 aa8.17□□□□□ -1.1
HMGB1-201ENST00000326004 GOLGA2Q08379 1002 aa8.16□□□□□ -1.1
HMGB1-201ENST00000326004 MFRPQ9BY79 579 aa8.16□□□□□ -1.1
HMGB1-201ENST00000326004 TRPC6Q9Y210 931 aa8.16□□□□□ -1.1
HMGB1-201ENST00000326004 GALR2O43603 387 aaPredicted RBP8.15□□□□□ -1.1
HMGB1-201ENST00000326004 NLRP6P59044 892 aa8.15□□□□□ -1.1
HMGB1-201ENST00000326004 KDM2AQ9Y2K7 1162 aa8.14□□□□□ -1.11
HMGB1-201ENST00000326004 TTLL13PA6NNM8 815 aa8.13□□□□□ -1.11
HMGB1-201ENST00000326004 MKRN3Q13064 507 aaKnown RBP8.12□□□□□ -1.11
HMGB1-201ENST00000326004 FBXO22Q8NEZ5 403 aa8.12□□□□□ -1.11
HMGB1-201ENST00000326004 BMP2KQ9NSY1 1161 aaPredicted RBP8.12□□□□□ -1.11
HMGB1-201ENST00000326004 PHF8Q9UPP1 1060 aa8.11□□□□□ -1.11
HMGB1-201ENST00000326004 GABBR2O75899 941 aa8.07□□□□□ -1.12
HMGB1-201ENST00000326004 TRIM35Q9UPQ4 493 aa8.07□□□□□ -1.12
HMGB1-201ENST00000326004 ASTLQ6HA08 431 aaPredicted RBP8.06□□□□□ -1.12
HMGB1-201ENST00000326004 ATMINO43313 823 aaPredicted RBP8.04□□□□□ -1.12
HMGB1-201ENST00000326004 PPP1R37O75864 691 aa8.04□□□□□ -1.12
HMGB1-201ENST00000326004 ILDR1Q86SU0 546 aaPredicted RBP8.04□□□□□ -1.12
HMGB1-201ENST00000326004 MS4A4AQ96JQ5 239 aa8.04□□□□□ -1.12
HMGB1-201ENST00000326004 ATN1P54259 1190 aaPredicted RBP8.03□□□□□ -1.12
HMGB1-201ENST00000326004 SP7Q8TDD2 431 aaPredicted RBP8.03□□□□□ -1.12
HMGB1-201ENST00000326004 BCANQ96GW7 911 aa8.03□□□□□ -1.12
HMGB1-201ENST00000326004 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP8.03□□□□□ -1.126e-7■■□□□ 13.1
HMGB1-201ENST00000326004 IER5LQ5T953 404 aa8.02□□□□□ -1.13
HMGB1-201ENST00000326004 CADPS2Q86UW7 1296 aa8□□□□□ -1.13
HMGB1-201ENST00000326004 DCBLD2Q96PD2 775 aa8□□□□□ -1.13
HMGB1-201ENST00000326004 WDR70Q9NW82 654 aa7.98□□□□□ -1.13
HMGB1-201ENST00000326004 IRX5P78411 483 aaPredicted RBP7.97□□□□□ -1.13
HMGB1-201ENST00000326004 OCEL1Q9H607 264 aa7.97□□□□□ -1.13
HMGB1-201ENST00000326004 P3H3Q8IVL6 736 aa7.96□□□□□ -1.14
HMGB1-201ENST00000326004 PDCD7Q8N8D1 485 aaKnown RBP7.96□□□□□ -1.14
HMGB1-201ENST00000326004 PLCG2P16885 1265 aa7.94□□□□□ -1.14
HMGB1-201ENST00000326004 SLC39A7Q92504 469 aa7.94□□□□□ -1.14
HMGB1-201ENST00000326004 PDE4AP27815 886 aa7.93□□□□□ -1.14
HMGB1-201ENST00000326004 DPY19L2Q6NUT2 758 aa7.92□□□□□ -1.14
HMGB1-201ENST00000326004 G3V3G9 751 aa7.91□□□□□ -1.14
HMGB1-201ENST00000326004 SEC24BO95487 1268 aa7.91□□□□□ -1.14
HMGB1-201ENST00000326004 C7P10643 843 aa7.91□□□□□ -1.14
HMGB1-201ENST00000326004 NBR1Q14596 966 aa7.91□□□□□ -1.14
HMGB1-201ENST00000326004 PELP1Q8IZL8 1130 aaKnown RBP7.91□□□□□ -1.14
HMGB1-201ENST00000326004 CRISPLD2Q9H0B8 497 aa7.91□□□□□ -1.14
HMGB1-201ENST00000326004 NCKAP5LQ9HCH0 1330 aa7.9□□□□□ -1.14
HMGB1-201ENST00000326004 MICALL2Q8IY33 904 aa7.9□□□□□ -1.14
HMGB1-201ENST00000326004 L3MBTL3Q96JM7 780 aaPredicted RBP7.9□□□□□ -1.14
HMGB1-201ENST00000326004 MFSD10Q14728 455 aa7.89□□□□□ -1.15
HMGB1-201ENST00000326004 BOLA1Q9Y3E2 137 aa7.89□□□□□ -1.15
HMGB1-201ENST00000326004 POTEIP0CG38 1075 aa7.88□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms